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(-) Description

Title :  CRYSTALLOGRAPHIC STRUCTURE OF APC35852
 
Authors :  D. Borek, Y. Chen, D. Shao, F. Collart, A. Joachimiak, Z. Otwinowski, Mi Center For Structural Genomics (Mcsg)
Date :  09 Aug 04  (Deposition) - 05 Oct 04  (Release) - 19 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.35
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Protein Structure Initiative, Mcsg, Parkinson'S Disease, Chaperone, Cysteine Protease, Psi, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Borek, Y. Chen, D. Shao, F. Collart, A. Joachimiak, Z. Otwinowski
Structural Analysis Of Dji Superfamily
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - APC35852
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG7
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: GEOBACILLUS STEAROTHERMOPHILUS
    Organism Taxid: 1422

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE

(-) Sites  (0, 0)

(no "Site" information available for 1U9C)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1U9C)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1U9C)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1U9C)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1U9C)

(-) Exons   (0, 0)

(no "Exon" information available for 1U9C)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:221
 aligned with Q5KWF3_GEOKA | Q5KWF3 from UniProtKB/TrEMBL  Length:221

    Alignment length:221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 
         Q5KWF3_GEOKA     1 MTKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFKEKGYDVKVASIQGGDVPLDPRSINEKDPSWAEAEAALKNTTRLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVCHGPSGLVNATYKDGTPIVKGKTITSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGEKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEELA 221
               SCOP domains d1u9ca_ A: GK2698 ortholog                                                                                                                                                                                                    SCOP domains
               CATH domains 1u9cA00 A:1-221  [code=3.40.50.880, no name defined]                                                                                                                                                                          CATH domains
               Pfam domains --DJ-1_PfpI_N-1u9cA02 A:3-39           --DJ-1_PfpI-1u9cA01 A:42-218                                                                                                                                                       --- Pfam domains
         Sec.struct. author ...eeeeee....eee..ee...hhhhhhhhhhhhhhh..eeeeee........hhhhh...hhhhhhhhhhh...ee.hhhhhh...eeee....hhhhhh..hhhhhhhhhhhhhh..eeeee.hhhhhhh..............ee...hhhhhhhhhhhhhh..hhhhhhhhh..ee.........eeee..eeee.hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u9c A   1 MSKRVLMVVTNHTTITDDHKTGLWLEEFAVPYLVFQEKGYDVKVASIQGGEVPLDPRSINEKDPSWAEAEAALKHTARLSKDDAHGFDAIFLPGGHGTMFDFPDNETLQYVLQQFAEDGRIIAAVcHGPSGLVNATYKDGTPIVKGKTVTSFTDEEEREVGLDVHMPFLLESTLRLRGANFVRGGKWTDFSVRDGNLITGQNPQSSRSTAEKVVAALEERE 221
                                    10        20        30        40        50        60        70        80        90       100       110       120     | 130       140       150       160       170       180       190       200       210       220 
                                                                                                                                                       126-CSD
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Clan: Glutaminase_I (73)
(-)
Clan: no clan defined [family: DJ-1_PfpI_N] (3)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1U9C)

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 Related Entries

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