1U8U - JenaLib

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Title :   E. COLI THIOESTERASE I/PROTEASE I/LYSOPHOSPHOLIASE L1 IN COMPLEXED WITH OCTANOIC ACID

Authors :   Y. -C. Lo, S. -C. Lin, Y. -C. Liaw

Date :   07 Aug 04 (Deposition) - 05 Apr 05 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.08

Chains :   Asym. Unit : A
Biol. Unit 1: A  (1x)
Biol. Unit 2: A  (2x)

Keywords :   Hydrolase, Protease (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. -C. Lo, S. -C. Lin, J. -F. Shaw, Y. -C. Liaw
Substrate Specificities Of Escherichia Coli Thioesterase I/Protease I/Lysophospholipase L1 Are Governed By Its Switc Loop Movement
Biochemistry V. 44 1971 2005
PubMed-ID: 15697222 | Reference-DOI: 10.1021/BI048109X

Molecule 1 - ACYL-COA THIOESTERASE I
	Chains	:	A
	EC Number	:	3.1.1.5, 3.1.2.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-20B(+)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	TESA, APEA, PLDC
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	562
	Synonym	:	THIOESTERASE I, PROTEASE I, LYSOPHOSPHOLIPASE L1

		1
Asymmetric Unit	:	A
Biological Unit 1 (1x)	:	A
Biological Unit 2 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 5)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	OCA	1	Ligand/Ion	OCTANOIC ACID (CAPRYLIC ACID)
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 1 (3, 5)

No.	Name	Count	Type	Full Name
1	GOL	3	Ligand/Ion	GLYCEROL
2	OCA	1	Ligand/Ion	OCTANOIC ACID (CAPRYLIC ACID)
3	SO4	1	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 10)

No.	Name	Count	Type	Full Name
1	GOL	6	Ligand/Ion	GLYCEROL
2	OCA	2	Ligand/Ion	OCTANOIC ACID (CAPRYLIC ACID)
3	SO4	2	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	MET A:17 , SER A:18 , ALA A:21 , ILE A:42 , ARG A:53 , LEU A:57 , ARG A:160 , GOL A:301 , HOH A:513	BINDING SITE FOR RESIDUE SO4 A 501
2	AC2	SOFTWARE	ASP A:9 , SER A:10 , GLY A:44 , GLY A:72 , ASN A:73 , ARG A:108 , PRO A:110 , HIS A:157 , HOH A:586	BINDING SITE FOR RESIDUE OCA A 201
3	AC3	SOFTWARE	ALA A:56 , GLN A:60 , ARG A:160 , SO4 A:501 , HOH A:563 , HOH A:569	BINDING SITE FOR RESIDUE GOL A 301
4	AC4	SOFTWARE	SER A:20 , ALA A:25 , ASP A:29 , SER A:36 , VAL A:38	BINDING SITE FOR RESIDUE GOL A 302
5	AC5	SOFTWARE	GLU A:143 , TRP A:150 , PHE A:165 , TRP A:169 , HOH A:553 , HOH A:590	BINDING SITE FOR RESIDUE GOL A 303

(no "SS Bond" information available for 1U8U)

(no "Cis Peptide Bond" information available for 1U8U)

(no "SAP(SNP)/Variant" information available for 1U8U)

Asymmetric Unit (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_GDSL_SER	PS01098	Lipolytic enzymes 'G-D-S-L' family, serine active site.	TESA_ECOL6	30-40	1	A:4-14
1	LIPASE_GDSL_SER	PS01098	Lipolytic enzymes 'G-D-S-L' family, serine active site.	TESA_ECOLI	30-40	1	A:4-14

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_GDSL_SER	PS01098	Lipolytic enzymes 'G-D-S-L' family, serine active site.	TESA_ECOL6	30-40	1	A:4-14
1	LIPASE_GDSL_SER	PS01098	Lipolytic enzymes 'G-D-S-L' family, serine active site.	TESA_ECOLI	30-40	1	A:4-14

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	LIPASE_GDSL_SER	PS01098	Lipolytic enzymes 'G-D-S-L' family, serine active site.	TESA_ECOL6	30-40	2	A:4-14
1	LIPASE_GDSL_SER	PS01098	Lipolytic enzymes 'G-D-S-L' family, serine active site.	TESA_ECOLI	30-40	2	A:4-14

(no "Exon" information available for 1U8U)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:179
 aligned with TESA_ECOL6 | P0ADA2 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:180
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206
           TESA_ECOL6    27 ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNH 206
               SCOP domains d1u8ua_ A: Thioesterase I, TAP                                                                                                                                                       SCOP domains
               CATH domains 1u8uA00 A:1-180  [code=3.40.50.1110, no name defined]                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeehhhhhh...hhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhh..eeeee.hhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhhh..ee..hhhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhhh-. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (2) ---LIPASE_GDSL---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1u8u A   1 ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLV-H 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
                                                                                                                                                                                                           178 |
                                                                                                                                                                                                             180

Chain A from PDB  Type:PROTEIN  Length:179
 aligned with TESA_ECOLI | P0ADA1 from UniProtKB/Swiss-Prot  Length:208

    Alignment length:180
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206
           TESA_ECOLI    27 ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLVNH 206
               SCOP domains d1u8ua_ A: Thioesterase I, TAP                                                                                                                                                       SCOP domains
               CATH domains 1u8uA00 A:1-180  [code=3.40.50.1110, no name defined]                                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeehhhhhh...hhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhhhhhhh..eeeee.hhhhhhh..hhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhhhhhhhhh..ee..hhhhhh.hhhhh.......hhhhhhhhhhhhhhhhhhhh-. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ---LIPASE_GDSL---------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1u8u A   1 ADTLLILGDSLSAGYRMSASAAWPALLNDKWQSKTSVVNASISGDTSQQGLARLPALLKQHQPRWVLVELGGNDGLRGFQPQQTEQTLRQILQDVKAANAEPLLMQIRLPANYGRRYNEAFSAIYPKLAKEFDVPLLPFFMEEVYLKPQWMQDDGIHPNRDAQPFIADWMAKQLQPLV-H 180
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180
                                                                                                                                                                                                           178 |
                                                                                                                                                                                                             180

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Flavodoxin-like (1057)

Superfamily: SGNH hydrolase (48)

Family: TAP-like (6)

Protein domain: Thioesterase I, TAP (5)

Escherichia coli [TaxId: 562] (5)

d1u8ua_

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1110, no name defined] (34)

Escherichia coli. Organism_taxid: 562. (5)

1u8uA00

A:1-180

(no "Pfam Domain" information available for 1U8U)

Asymmetric Unit(hide GO term definitions)

Chain A (TESA_ECOLI | P0ADA1)

molecular function
	GO:0047617	acyl-CoA hydrolase activity	Catalysis of the reaction: acyl-CoA + H2O = CoA + a carboxylate.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016298	lipase activity	Catalysis of the hydrolysis of a lipid or phospholipid.
	GO:0004622	lysophospholipase activity	Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate.
	GO:0016290	palmitoyl-CoA hydrolase activity	Catalysis of the reaction: palmitoyl-CoA + H2O = CoA + palmitate.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
	GO:0004620	phospholipase activity	Catalysis of the hydrolysis of a glycerophospholipid.
biological process
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Chain A (TESA_ECOL6 | P0ADA2)

molecular function
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0016298	lipase activity	Catalysis of the hydrolysis of a lipid or phospholipid.
	GO:0004622	lysophospholipase activity	Catalysis of the reaction: 2-lysophosphatidylcholine + H2O = glycerophosphocholine + a carboxylate.
	GO:0008233	peptidase activity	Catalysis of the hydrolysis of a peptide bond. A peptide bond is a covalent bond formed when the carbon atom from the carboxyl group of one amino acid shares electrons with the nitrogen atom from the amino group of a second amino acid.
biological process
	GO:0006629	lipid metabolic process	The chemical reactions and pathways involving lipids, compounds soluble in an organic solvent but not, or sparingly, in an aqueous solvent. Includes fatty acids; neutral fats, other fatty-acid esters, and soaps; long-chain (fatty) alcohols and waxes; sphingoids and other long-chain bases; glycolipids, phospholipids and sphingolipids; and carotenes, polyprenols, sterols, terpenes and other isoprenoids.
	GO:0006508	proteolysis	The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
cellular component
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
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	Cis Peptide Bonds
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Biological Units
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	TESA_ECOLI \| P0ADA1
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	3.1.1.5
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	3.1.2.-
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	TESA_ECOL6 \| P0ADA2
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UniProtKB/Swiss-Prot
	TESA_ECOL6 \| P0ADA2	:	1ivn 1j00 1jrl 1v2g
	TESA_ECOLI \| P0ADA1	:	1ivn 1j00 1jrl 1v2g 5tic 5tid 5tie 5tif

1ivn	1IVN IS THE NATIVE TAP STRUCTURE.
1j00	1J00 IS THE TAP-DEP COMPLEX STRUCTURE, WHICH IS TAP IN COMPLEX WITH DIETHYL PHOSPHONO MOIETY.
1jrl	1JRL IS TAP'S L109P MUTANT STRUCTURE.

Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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SCOP Domains (1, 1)

CATH Domains (1, 1)

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Gene Ontology (12, 19)

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