Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Asym. Unit - sites
(-)Biological Unit 1
(-)Biol. Unit 1 - sites
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Asym. Unit - sites
Asym. Unit - sites  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biol. Unit 1 - sites
Biol. Unit 1 - sites  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN YJJX FROM ESCHERICHIA COLI
 
Authors :  J. Zheng, V. K. Singh, Z. Jia, Montreal-Kingston Bacterial Structural Genomics Initiative (Bsgi)
Date :  28 Jul 04  (Deposition) - 23 Aug 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  3 Layers Alpha/Beta/Alpha Protein, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. Zheng, V. K. Singh, Z. Jia
Identification Of An Itpase/Xtpase In Escherichia Coli By Structural And Biochemical Analysis
Structure V. 13 1511 2005
PubMed-ID: 16216582  |  Reference-DOI: 10.1016/J.STR.2005.07.007
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL UPF0244 PROTEIN YJJX
    ChainsA, B, C, D, E, F, G, H
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21
    Expression System PlasmidPET21B
    Expression System StrainBL21
    Expression System Taxid511693
    Expression System Vector TypePLASMID
    GeneYJJX
    Organism ScientificESCHERICHIA COLI
    Organism Taxid562

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit ABCDEFGH
Biological Unit 1 (1x)AB      
Biological Unit 2 (1x)  CD    
Biological Unit 3 (1x)    EF  
Biological Unit 4 (1x)      GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 15)

Asymmetric Unit (1, 15)
No.NameCountTypeFull Name
1SO415Ligand/IonSULFATE ION
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 3 (1, 4)
No.NameCountTypeFull Name
1SO44Ligand/IonSULFATE ION
Biological Unit 4 (1, 3)
No.NameCountTypeFull Name
1SO43Ligand/IonSULFATE ION

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS H:16 , ARG H:153 , HOH H:4430BINDING SITE FOR RESIDUE SO4 H 4396
02AC2SOFTWARETHR H:11 , THR H:12 , ASN H:13 , HOH H:4427 , HOH H:4430 , HOH H:4455BINDING SITE FOR RESIDUE SO4 H 4397
03AC3SOFTWARETHR E:11 , THR E:12 , ASN E:13 , LYS E:16 , ARG E:61 , HOH E:4434 , HOH E:4447 , HOH E:4465BINDING SITE FOR RESIDUE SO4 E 4398
04AC4SOFTWARETHR G:11 , THR G:12 , ASN G:13 , HOH G:4407 , HOH G:4418 , HOH G:4436BINDING SITE FOR RESIDUE SO4 G 4399
05AC5SOFTWARETHR F:11 , THR F:12 , ASN F:13 , HOH F:4420 , HOH F:4475BINDING SITE FOR RESIDUE SO4 F 4400
06AC6SOFTWARETHR D:11 , THR D:12 , ASN D:13 , ARG D:61 , ARG D:138 , HOH D:4418 , HOH D:4426 , HOH D:4489 , HOH D:4506BINDING SITE FOR RESIDUE SO4 D 4401
07AC7SOFTWAREARG D:153 , HOH D:4408 , HOH D:4428 , HOH D:4465 , HOH D:4474 , HOH D:4475BINDING SITE FOR RESIDUE SO4 D 4402
08AC8SOFTWARELYS C:16 , ALA C:80 , ARG C:153 , HOH C:4475 , HOH C:4485 , HOH C:4487BINDING SITE FOR RESIDUE SO4 C 4403
09AC9SOFTWARETHR A:11 , THR A:12 , LYS A:16 , ARG A:61 , HOH A:4476BINDING SITE FOR RESIDUE SO4 A 4404
10BC1SOFTWAREASN B:13 , GLY B:137 , ARG B:153 , HOH B:4424 , HOH B:4436 , HOH B:4440 , HOH B:4458 , HOH B:4476 , HOH B:4483BINDING SITE FOR RESIDUE SO4 B 4405
11BC2SOFTWARETHR B:11 , THR B:12 , ARG B:61 , ARG B:138 , HOH B:4481 , HOH B:4489BINDING SITE FOR RESIDUE SO4 B 4406
12BC3SOFTWARETHR C:11 , THR C:12 , LYS C:16 , HOH C:4485BINDING SITE FOR RESIDUE SO4 C 4407
13BC4SOFTWAREARG E:153 , HOH E:4446 , HOH E:4448 , HOH E:4465BINDING SITE FOR RESIDUE SO4 E 4408
14BC5SOFTWAREASN F:13 , GLY F:124 , ARG F:153 , HOH F:4475 , HOH F:4477 , HOH F:4496BINDING SITE FOR RESIDUE SO4 F 4409
15BC6SOFTWAREGLY B:50 , SER B:51 , GLU B:52 , HOH B:4416 , HOH B:4418 , HOH B:4450 , HOH B:4469 , GLY D:50 , SER D:51 , GLU D:52BINDING SITE FOR RESIDUE SO4 B 4410

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1U5W)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1U5W)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1U5W)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1U5W)

(-) Exons   (0, 0)

(no "Exon" information available for 1U5W)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:162
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:171
                                                                                                                                                                                                   170 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170 
           NCPP_ECOLI     1 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY-   -
               SCOP domains d1u5wa1 A:4-173 Hypothetical protein YjjX                                                                                                                                 - SCOP domains
               CATH domains 1u5wA00 A:4-174  [code=3.90.950.10, no name defined]                                                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeeeee...eeeee...ee.hhhhhhhhh...hhhhhhhh.---------hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w A   4 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRY---------EGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYS 174
                                    13        23        33        43        53        63        73        83        93       103       113       123      |  -      |143       153       163       173 
                                                                                                                                                        130       140                                  

Chain B from PDB  Type:PROTEIN  Length:172
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:172
                             1                                                                                                                                                                      170 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169| 
           NCPP_ECOLI     - -MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY-   -
               SCOP domains d1u5wb_ B: Hypothetical protein YjjX                                                                                                                                         SCOP domains
               CATH domains 1u5wB00 B:3-174  [code=3.90.950.10, no name defined]                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhhhh.hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w B   3 IMHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYS 174
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172  

Chain C from PDB  Type:PROTEIN  Length:174
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:174
                              1                                                                                                                                                                      170  
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168 |  
           NCPP_ECOLI     - --MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY--   -
               SCOP domains d1u5wc_ C: Hypothetical protein YjjX                                                                                                                                           SCOP domains
               CATH domains 1u5wC00 C:2-175  [code=3.90.950.10, no name defined]                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeee...hhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeeeee...eeeee...ee.hhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1u5w C   2 LIMHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYSG 175
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171    

Chain D from PDB  Type:PROTEIN  Length:172
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:172
                             1                                                                                                                                                                      170 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169| 
           NCPP_ECOLI     - -MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY-   -
               SCOP domains d1u5wd_ D: Hypothetical protein YjjX                                                                                                                                         SCOP domains
               CATH domains 1u5wD00 D:3-174  [code=3.90.950.10, no name defined]                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhhh...eeeeeee..........hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w D   3 IMHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYS 174
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172  

Chain E from PDB  Type:PROTEIN  Length:172
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:172
                             1                                                                                                                                                                      170 
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169| 
           NCPP_ECOLI     - -MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY-   -
               SCOP domains d1u5we_ E: Hypothetical protein YjjX                                                                                                                                         SCOP domains
               CATH domains 1u5wE00 E:3-174  [code=3.90.950.10, no name defined]                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhhhhh...eeeee...........hhhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w E   3 IMHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYS 174
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172  

Chain F from PDB  Type:PROTEIN  Length:172
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:172
                                                                                                                                                                                                   170  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170  
           NCPP_ECOLI     1 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY--   -
               SCOP domains d1u5wf_ F: Hypothetical protein YjjX                                                                                                                                         SCOP domains
               CATH domains 1u5wF00 F:4-175  [code=3.90.950.10, no name defined]                                                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeeee....eeeee...ee.hhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w F   4 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYSG 175
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173  

Chain G from PDB  Type:PROTEIN  Length:168
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:173
                              1                                                                                                                                                                      170 
                              |      8        18        28        38        48        58        68        78        88        98       108       118       128       138       148       158       168 | 
           NCPP_ECOLI     - --MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY-   -
               SCOP domains d1u5wg_ G: Hypothetical protein YjjX                                                                                                                                          SCOP domains
               CATH domains 1u5wG00 G:2-174  [code=3.90.950.10, no name defined]                                                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeee...hhhhhhhhhhhhhhhhh...eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeee...eeeeeeeee....eeeee...ee.hhhhhhhhh...hhhhhhhh....-----.hhhhhhhh....hhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w G   2 LIMHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGI-----KEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVYS 174
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 |     141       151       161       171   
                                                                                                                                                             133   139                                   

Chain H from PDB  Type:PROTEIN  Length:170
 aligned with NCPP_ECOLI | P39411 from UniProtKB/Swiss-Prot  Length:170

    Alignment length:170
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170
           NCPP_ECOLI     1 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY 170
               SCOP domains d1u5wh_ H: Hypothetical protein YjjX                                                                                                                                       SCOP domains
               CATH domains 1u5wH00 H:4-173  [code=3.90.950.10, no name defined]                                                                                                                       CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhhhh....eeeee............hhhhhhhhhhhhhhhhhhhh....eeeeeeeeee..eeeeeeeee....eeeee...ee.hhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u5w H   4 MHQVVCATTNPAKIQAILQAFHEIFGEGSCHIASVAVESGVPEQPFGSEETRAGARNRVANARRLLPEADFWVAIEAGIDGDSTFSWVVIENASQRGEARSATLPLPAVILEKVREGEALGPVMSRYTGIDEIGRKEGAIGVFTAGKLTRASVYHQAVILALSPFHNAVY 173
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit

(-) CATH Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1U5W)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (NCPP_ECOLI | P39411)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0017111    nucleoside-triphosphatase activity    Catalysis of the reaction: a nucleoside triphosphate + H2O = nucleoside diphosphate + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0046677    response to antibiotic    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an antibiotic stimulus. An antibiotic is a chemical substance produced by a microorganism which has the capacity to inhibit the growth of or to kill other microorganisms.
    GO:0006772    thiamine metabolic process    The chemical reactions and pathways involving thiamine (vitamin B1), a water soluble vitamin present in fresh vegetables and meats, especially liver.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    SO4  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
    BC1  [ RasMol ]  +environment [ RasMol ]
    BC2  [ RasMol ]  +environment [ RasMol ]
    BC3  [ RasMol ]  +environment [ RasMol ]
    BC4  [ RasMol ]  +environment [ RasMol ]
    BC5  [ RasMol ]  +environment [ RasMol ]
    BC6  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1u5w)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1u5w
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  NCPP_ECOLI | P39411
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  NCPP_ECOLI | P39411
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1U5W)

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 1U5W)