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(-) Description

Title :  STRUCTURE OF A LLAMA VHH DOMAIN RAISED AGAINST A CARBAZOLE MOLECULE
 
Authors :  C. Cambillau, S. Spinelli, A. Desmyter, T. Verrips
Date :  14 Jul 04  (Deposition) - 28 Jun 05  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.60
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immunoglobulin Domain, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Cambillau, S. Spinelli, A. Desmyter, T. Verrips
Crystal Structure Of A Llama Vhh Domain Raised Against A Carbazole Hapten
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - IMMUNOGLOBULIN HEAVY CHAIN VARIABLE DOMAIN
    Chains: A, B
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Taxid: 4932
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1PCA2Mod. Amino AcidPYROGLUTAMIC ACID
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1PCA1Mod. Amino AcidPYROGLUTAMIC ACID
Biological Unit 2 (1, 1)
No.NameCountTypeFull Name
1PCA1Mod. Amino AcidPYROGLUTAMIC ACID

(-) Sites  (0, 0)

(no "Site" information available for 1U0Q)

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:22 -A:92
2B:222 -B:292

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1U0Q)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1U0Q)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1U0Q)

(-) Exons   (0, 0)

(no "Exon" information available for 1U0Q)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                              
               SCOP domains d1u0qa_ A: automated matches                                                                                                  SCOP domains
               CATH domains -1u0qA00 A:2-113 Immunoglobulins                                                                                              CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee....eeeeeee..hhhhhheeeeeee......eeeeee......eee.......eeeee.....eeeeee...hhhhheeeeeeee........hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                1u0q A    1 xVQLQESGGGLVQAGGSLRLSCAASGRTFSTYAVGWFRQAPGKEREFVGYFGTRGGRTYYADSVKGRFTIAIDNAKNTVYLQMNSLKLDDTAVYYCAVRMPYSGDYRSSGTYDYWGQGTQVTVSS  113
                            |       10        20        30        40        50  |     59        69        79   |||  86        96    ||100F||     108     
                            |                                                 52A                            82A||               100A|||||||             
                            1-PCA                                                                             82B|                100B||||||             
                                                                                                               82C                 100C|||||             
                                                                                                                                    100D||||             
                                                                                                                                     100E|||             
                                                                                                                                      100F||             
                                                                                                                                       100G|             
                                                                                                                                        100H             


Chain B from PDB  Type:PROTEIN  Length:125
                                                                                                                                                              
               SCOP domains d1u0qb_ B: automated matches                                                                                                  SCOP domains
               CATH domains -1u0qB00 B:202-313 Immunoglobulins                                                                                            CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee....eeeeeee..hhhhhheeeeeee......eeeeee......eee.......eeeee.....eeeeee...hhhhheeeeeeee........hhhhh.ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                1u0q B  201 xVQLQESGGGLVQAGGSLRLSCAASGRTFSTYAVGWFRQAPGKEREFVGYFGTRGGRTYYADSVKGRFTIAIDNAKNTVYLQMNSLKLDDTAVYYCAVRMPYSGDYRSSGTYDYWGQGTQVTVSS  313
                            |      210       220       230       240       250  |    259       269       279   ||| 286       296    ||300F||     308     
                          201-PCA                                            252A                           282A||               300A|||||||             
                                                                                                             282B|                300B||||||             
                                                                                                              282C                 300C|||||             
                                                                                                                                    300D||||             
                                                                                                                                     300E|||             
                                                                                                                                      300F||             
                                                                                                                                       300G|             
                                                                                                                                        300H
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1U0Q)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

1hcv 1i3u 1qd0