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(-) Description

Title :  CRYSTAL STRUCTURE OF MOUSE PHOSPHOGLUCOSE ISOMERASE IN COMPLEX WITH ERYTHROSE 4-PHOSPHATE
 
Authors :  J. T. G. Solomons, E. M. Zimmerly, S. Burns, N. Krishnamurthy, M. K. Swan S. Krings, H. Muirhead, J. Chirgwin, C. Davies
Date :  13 Jul 04  (Deposition) - 02 Nov 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Aldose-Ketose Isomerase, Dimer, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  J. T. Graham Solomons, E. M. Zimmerly, S. Burns, N. Krishnamurthy, M. K. Swan, S. Krings, H. Muirhead, J. Chirgwin, C. Davies
The Crystal Structure Of Mouse Phosphoglucose Isomerase At 1. 6A Resolution And Its Complex With Glucose 6-Phosphate Reveals The Catalytic Mechanism Of Sugar Ring Opening.
J. Mol. Biol. V. 342 847 2004
PubMed-ID: 15342241  |  Reference-DOI: 10.1016/J.JMB.2004.07.085

(-) Compounds

Molecule 1 - GLUCOSE-6-PHOSPHATE ISOMERASE
    ChainsA, B
    EC Number5.3.1.9
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET5A
    Expression System StrainBL21DE3PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneGPI
    Organism CommonHOUSE MOUSE
    Organism ScientificMUS MUSCULUS
    Organism Taxid10090
    SynonymGPI, PHOSPHOGLUCOSE ISOMERASE, PGI, PHOSPHOHEXOSE ISOMERASE, PHI, NEUROLEUKIN, NLK

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 20)

Asymmetric/Biological Unit (4, 20)
No.NameCountTypeFull Name
1BME5Ligand/IonBETA-MERCAPTOETHANOL
2E4P2Ligand/IonERYTHOSE-4-PHOSPHATE
3GOL6Ligand/IonGLYCEROL
4SO47Ligand/IonSULFATE ION

(-) Sites  (20, 20)

Asymmetric Unit (20, 20)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREALA A:1 , ALA A:2 , ARG A:5 , SER A:366 , ALA A:368 , HOH A:1102 , HOH A:1305BINDING SITE FOR RESIDUE SO4 A 951
02AC2SOFTWAREARG B:136 , HOH B:1199 , HOH B:1287BINDING SITE FOR RESIDUE SO4 B 952
03AC3SOFTWAREALA B:368 , ARG B:369 , HOH B:1226BINDING SITE FOR RESIDUE SO4 B 953
04AC4SOFTWAREARG A:105 , SER A:297 , HOH A:1367BINDING SITE FOR RESIDUE SO4 A 954
05AC5SOFTWARELYS B:146 , SER B:147 , HOH B:1029BINDING SITE FOR RESIDUE SO4 B 955
06AC6SOFTWARETHR A:149 , ARG A:179 , HOH A:1287 , HOH A:1361BINDING SITE FOR RESIDUE SO4 A 956
07AC7SOFTWAREARG B:179 , HOH B:1317BINDING SITE FOR RESIDUE SO4 B 957
08AC8SOFTWAREILE A:156 , GLY A:157 , GLY A:158 , SER A:159 , SER A:209 , LYS A:210 , THR A:211 , THR A:214 , GLN A:353 , GLU A:357 , LYS A:518 , HOH A:1004 , HOH A:1007 , HOH A:1225 , HOH A:1242 , HOH A:1247 , HIS B:388BINDING SITE FOR RESIDUE E4P A 901
09AC9SOFTWAREHIS A:388 , ILE B:156 , GLY B:157 , GLY B:158 , SER B:159 , SER B:209 , LYS B:210 , THR B:211 , THR B:214 , GLN B:353 , GLU B:357 , HOH B:1059 , HOH B:1152 , HOH B:1161 , HOH B:1214 , HOH B:1215 , HOH B:1216 , HOH B:1217BINDING SITE FOR RESIDUE E4P B 902
10BC1SOFTWAREGLY A:418 , LYS A:422 , HOH A:1093 , HOH A:1153 , ARG B:552BINDING SITE FOR RESIDUE BME B 961
11BC2SOFTWAREARG A:346 , GLN B:342 , HIS B:345BINDING SITE FOR RESIDUE BME A 962
12BC3SOFTWARELEU A:41 , ASN A:42 , HOH A:1117BINDING SITE FOR RESIDUE BME A 963
13BC4SOFTWAREPRO A:463 , VAL A:466 , GLU A:468 , HOH A:1333 , TYR B:362 , ILE B:363 , ARG B:369 , HOH B:1309BINDING SITE FOR RESIDUE BME A 964
14BC5SOFTWAREASN B:82 , SER B:87 , ILE B:89 , HOH B:1394BINDING SITE FOR RESIDUE BME B 966
15BC6SOFTWAREARG A:134 , ASP A:139 , TRP A:140 , LYS A:141 , LYS A:240BINDING SITE FOR RESIDUE GOL A 971
16BC7SOFTWAREPRO B:7 , GLN B:8 , SER B:73 , HOH B:1197 , HOH B:1208BINDING SITE FOR RESIDUE GOL B 972
17BC8SOFTWAREARG A:105 , ASN A:122 , LEU A:125 , ASP A:126 , GLU A:293 , HOH A:1198BINDING SITE FOR RESIDUE GOL A 973
18BC9SOFTWARETHR A:223 , TRP A:227 , HOH A:1105 , HOH A:1228 , HOH A:1231BINDING SITE FOR RESIDUE GOL A 974
19CC1SOFTWAREASN A:104 , SER A:106 , THR A:108 , GLN A:304 , LEU A:307 , HOH A:1170 , HOH A:1221 , HOH A:1350 , HOH A:1375BINDING SITE FOR RESIDUE GOL A 975
20CC2SOFTWARELYS A:127 , PHE A:131 , VAL A:243 , GLN A:260 , ASN A:261 , LEU A:263 , HOH A:1156 , HOH A:1226BINDING SITE FOR RESIDUE GOL A 976

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1U0G)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gly A:383 -Thr A:384
2Gly B:383 -Thr B:384

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1U0G)

(-) PROSITE Motifs  (3, 6)

Asymmetric/Biological Unit (3, 6)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1P_GLUCOSE_ISOMERASE_3PS51463 Glucose-6-phosphate isomerase family profile.G6PI_MOUSE7-553
 
  2A:6-552
B:6-552
2P_GLUCOSE_ISOMERASE_1PS00765 Phosphoglucose isomerase signature 1.G6PI_MOUSE268-281
 
  2A:267-280
B:267-280
3P_GLUCOSE_ISOMERASE_2PS00174 Phosphoglucose isomerase signature 2.G6PI_MOUSE502-519
 
  2A:501-518
B:501-518

(-) Exons   (0, 0)

(no "Exon" information available for 1U0G)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:556
 aligned with G6PI_MOUSE | P06745 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:556
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
           G6PI_MOUSE     2 AALTRNPQFQKLLEWHRANSANLKLRELFEADPERFNNFSLNLNTNHGHILVDYSKNLVNKEVMQMLVELAKSRGVEAARDNMFSGSKINYTENRAVLHVALRNRSNTPIKVDGKDVMPEVNRVLDKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEPELEGSSAVTSHDSSTNGLISFIKQQRDTKL 557
               SCOP domains d1u0ga_ A: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1u0gA01 A:1-98,A:294-514 Glucose-6-phosphate isomerase like protein; domain 1                     1u0gA02 A:99-293 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              1u0gA01 A:1-98,A:294-514 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                1u0gA03 A:515-555                        - CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhheeeee....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhh............eeeee.hhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhh......eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhh.hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee.hhhhhhhhhhhhhhhhhhhh................eee....hhhhh.hhhhhhhh.....eeeeeeee....hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhh..hhhhhh........hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----P_GLUCOSE_ISOMERASE_3  PDB: A:6-552 UniProt: 7-553                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS-------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u0g A   1 AALTRNPQFQKLLEWHRANSANLKLRELFEADPERFNNFSLNLNTNHGHILVDYSKNLVNKEVMQMLVELAKSRGVEAARDNMFSGSKINYTEDRAVLHVALRNRSNTPIKVDGKDVMPEVNRVLDKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEFGIDPQNMLEFWDWVGGRYSLWSAIGLSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEPELEGSSAVTSHDSSTNGLISFIKQQRDTKL 556
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550      

Chain B from PDB  Type:PROTEIN  Length:556
 aligned with G6PI_MOUSE | P06745 from UniProtKB/Swiss-Prot  Length:558

    Alignment length:556
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551      
           G6PI_MOUSE     2 AALTRNPQFQKLLEWHRANSANLKLRELFEADPERFNNFSLNLNTNHGHILVDYSKNLVNKEVMQMLVELAKSRGVEAARDNMFSGSKINYTENRAVLHVALRNRSNTPIKVDGKDVMPEVNRVLDKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEFGIDPQNMFEFWDWVGGRYSLWSAIGLSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEPELEGSSAVTSHDSSTNGLISFIKQQRDTKL 557
               SCOP domains d1u0gb_ B: Phosphoglucose isomerase, PGI                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 1u0gB01 B:1-98,B:294-514 Glucose-6-phosphate isomerase like protein; domain 1                     1u0gB02 B:99-293 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                              1u0gB01 B:1-98,B:294-514 Glucose-6-phosphate isomerase like protein; domain 1                                                                                                                                                1u0gB03 B:515-555                        - CATH domains
           Pfam domains (1) ----------------------------------------------------PGI-1u0gB01 B:53-545                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ----------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------PGI-1u0gB02 B:53-545                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         ----------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhheeeee....eeeee......hhhhhhhhhhhhhhhhhhhhhhhhhh............hhhhhh.......ee..eehhhhhhhhhhhhhhhhhhhhhh...........eeeee.hhhhhhhhhhhhhhhhhhh....eeeee...hhhhhhhhhh......eeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee.hhhhhhhhh.hhh.eee.....hhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeee......hhhhhhhhhhhhhhh................eee....hhhhhhhhhhhhhh.....eeeeeeee...hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhhhhhhhh......eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----P_GLUCOSE_ISOMERASE_3  PDB: B:6-552 UniProt: 7-553                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ---- PROSITE (1)
                PROSITE (2) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOM----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------P_GLUCOSE_ISOMERAS-------------------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1u0g B   1 AALTRNPQFQKLLEWHRANSANLKLRELFEADPERFNNFSLNLNTNHGHILVDYSKNLVNKEVMQMLVELAKSRGVEAARDNMFSGSKINYTEDRAVLHVALRNRSNTPIKVDGKDVMPEVNRVLDKMKSFCQRVRSGDWKGYTGKSITDIINIGIGGSDLGPLMVTEALKPYSKGGPRVWFVSNIDGTHIAKTLASLSPETSLFIIASKTFTTQETITNAETAKEWFLEAAKDPSAVAKHFVALSTNTAKVKEFGIDPQNMLEFWDWVGGRYSLWSAIGLSIALHVGFDHFEQLLSGAHWMDQHFLKTPLEKNAPVLLALLGIWYINCYGCETHALLPYDQYMHRFAAYFQQGDMESNGKYITKSGARVDHQTGPIVWGEPGTNGQHAFYQLIHQGTKMIPCDFLIPVQTQHPIRKGLHHKILLANFLAQTEALMKGKLPEEARKELQAAGKSPEDLEKLLPHKVFEGNRPTNSIVFTKLTPFILGALIAMYEHKIFVQGIMWDINSFDQWGVELGKQLAKKIEPELEGSSAVTSHDSSTNGLISFIKQQRDTKL 556
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550      

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: SIS (53)
(-)
Family: PGI (23)
1aPGI-1u0gB01B:53-545
1bPGI-1u0gB02B:53-545

(-) Gene Ontology  (34, 34)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (G6PI_MOUSE | P06745)
molecular function
    GO:0005125    cytokine activity    Functions to control the survival, growth, differentiation and effector function of tissues and cells.
    GO:0004347    glucose-6-phosphate isomerase activity    Catalysis of the reaction: D-glucose 6-phosphate = D-fructose 6-phosphate.
    GO:0008083    growth factor activity    The function that stimulates a cell to grow or proliferate. Most growth factors have other actions besides the induction of cell growth or proliferation.
    GO:0016866    intramolecular transferase activity    Catalysis of the transfer of a functional group from one position to another within a single molecule.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0048029    monosaccharide binding    Interacting selectively and non-covalently with any monosaccharide. Monosaccharides are the simplest carbohydrates; they are polyhydroxy aldehydes H[CH(OH)]nC(=O)H or polyhydroxy ketones H[CHOH]nC(=O)[CHOH]mH with three or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0031625    ubiquitin protein ligase binding    Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
    GO:0046185    aldehyde catabolic process    The chemical reactions and pathways resulting in the breakdown of aldehydes, any organic compound with the formula R-CH=O.
    GO:0001525    angiogenesis    Blood vessel formation when new vessels emerge from the proliferation of pre-existing blood vessels.
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0034101    erythrocyte homeostasis    Any process of regulating the production and elimination of erythrocytes within an organism.
    GO:0006094    gluconeogenesis    The formation of glucose from noncarbohydrate precursors, such as pyruvate, amino acids and glycerol.
    GO:0051156    glucose 6-phosphate metabolic process    The chemical reactions and pathways involving glucose 6-phosphate, a monophosphorylated derivative of glucose with the phosphate group attached to C-6.
    GO:0042593    glucose homeostasis    Any process involved in the maintenance of an internal steady state of glucose within an organism or cell.
    GO:0006096    glycolytic process    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, with the concomitant production of a small amount of ATP and the reduction of NAD(P) to NAD(P)H. Glycolysis begins with the metabolism of a carbohydrate to generate products that can enter the pathway and ends with the production of pyruvate. Pyruvate may be converted to acetyl-coenzyme A, ethanol, lactate, or other small molecules.
    GO:0061620    glycolytic process through glucose-6-phosphate    The chemical reactions and pathways resulting in the breakdown of a carbohydrate into pyruvate, occurring through a glucose-6-phosphate intermediate, with the concomitant production of a small amount of ATP.
    GO:0001701    in utero embryonic development    The process whose specific outcome is the progression of the embryo in the uterus over time, from formation of the zygote in the oviduct, to birth. An example of this process is found in Mus musculus.
    GO:0007611    learning or memory    The acquisition and processing of information and/or the storage and retrieval of this information over time.
    GO:0001707    mesoderm formation    The process that gives rise to the mesoderm. This process pertains to the initial formation of the structure from unspecified parts.
    GO:0019242    methylglyoxal biosynthetic process    The chemical reactions and pathways resulting in the formation of methylglyoxal, CH3-CO-CHO, the aldehyde of pyruvic acid.
    GO:0043154    negative regulation of cysteine-type endopeptidase activity involved in apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of a cysteine-type endopeptidase activity involved in the apoptotic process.
    GO:0043524    negative regulation of neuron apoptotic process    Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process in neurons.
cellular component
    GO:0060170    ciliary membrane    The portion of the plasma membrane surrounding a cilium.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0043209    myelin sheath    An electrically insulating fatty layer that surrounds the axons of many neurons. It is an outgrowth of glial cells: Schwann cells supply the myelin for peripheral neurons while oligodendrocytes supply it to those of the central nervous system.
    GO:0043005    neuron projection    A prolongation or process extending from a nerve cell, e.g. an axon or dendrite.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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        G6PI_MOUSE | P067451u0e 1u0f 2cvp 2cxn 2cxo 2cxp 2cxq 2cxr 2cxs 2cxt 2cxu

(-) Related Entries Specified in the PDB File

1u0e 1u0f