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Asym./Biol. Unit (Jmol Viewer)

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Title :   CRYSTAL STRUCTURE OF PUTATIVE ANTIBIOTIC BIOSYTHESIS MONOOXYGENASE FROM BACILLUS CEREUS

Authors :   Y. Kim, L. Lezondra, A. Joachimiak, Midwest Center For Structural (Mcsg)

Date :   09 Jul 04 (Deposition) - 14 Sep 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.84

Chains :   Asym./Biol. Unit : A,B,C

Keywords :   Structural Genomics, Protein Structure Initiative, Mcsg, Hypothetical Protein, Bacillus Cereus, Psi, Midwest Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, L. Lezondra, A. Joachimiak
Crystal Structure Of Hypothetical Protein Apc24875 From Bacillus Cereus
To Be Published
PubMed: search

Molecule 1 - HYPOTHETICAL PROTEIN
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Organism Scientific	:	BACILLUS CEREUS ATCC 14579
	Organism Taxid	:	226900
	Strain	:	ATCC 14579 / DSM 31

		1	2	3
Asymmetric/Biological Unit	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (3, 8)

No.	Name	Count	Type	Full Name
1	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
2	FMT	1	Ligand/Ion	FORMIC ACID
3	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:28 , HOH A:515	BINDING SITE FOR RESIDUE EDO A 502
2	AC2	SOFTWARE	HOH A:616	BINDING SITE FOR RESIDUE FMT A 501

(no "SS Bond" information available for 1TZ0)

Asymmetric/Biological Unit

No.	Residues
1	Arg A:83	-	Gly A:84
2	Gly A:84	-	Lys A:85

(no "SAP(SNP)/Variant" information available for 1TZ0)

(no "PROSITE Motif" information available for 1TZ0)

(no "Exon" information available for 1TZ0)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:108
 aligned with Q81C15_BACCR | Q81C15 from UniProtKB/TrEMBL  Length:111

    Alignment length:108
                                    11        21        31        41        51        61        71        81        91       101        
         Q81C15_BACCR     2 GYMFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVMIRWESEEAWKNWETSEEHLAGHRAGRGKPKPDHIINVDHAVYYVKSSKAAYQ 109
               SCOP domains d1tz0a_ A: Hypothetical protein BC2969                                                                       SCOP domains
               CATH domains 1tz0A00 A:2-109  [code=3.30.70.900, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...eeeeeeeee...hhhhhhhhh....hhhhh..eeeeeeee.......eeeeeeeee.hhhhhhhhhh....hhhhh......hhh.eeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1tz0 A   2 GYmFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVmIRWESEEAWKNWETSEEHLAGHRAGRGKPKPDHIINVDHAVYYVKSSKAAYQ 109
                              |     11        21        31        41        51     |  61        71        81        91       101        
                              |                                                   57-MSE                                                
                              4-MSE

Chain B from PDB  Type:PROTEIN  Length:97
 aligned with Q81C15_BACCR | Q81C15 from UniProtKB/TrEMBL  Length:111

    Alignment length:106
                                    11        21        31        41        51        61        71        81        91       101      
         Q81C15_BACCR     2 GYMFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVMIRWESEEAWKNWETSEEHLAGHRAGRGKPKPDHIINVDHAVYYVKSSKAA 107
               SCOP domains d1tz0b_ B: Hypothetical protein BC2969                                                                     SCOP domains
               CATH domains 1tz0B00 B:2-107  [code=3.30.70.900, no name defined]                                                       CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeee...hhhhhhhhh....hhhhh..eeeeeeee.......eeeeeeeee.hhhhhhhhhhhhhhhhh---------...eeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------- Transcript
                 1tz0 B   2 GYmFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVmIRWESEEAWKNWETSEEHLAG---------PDHIINVDHAVYYVKSSKAA 107
                              |     11        21        31        41        51     |  61        71      |  -      | 91       101      
                              4-MSE                                               57-MSE               78        88

Chain C from PDB  Type:PROTEIN  Length:101
 aligned with Q81C15_BACCR | Q81C15 from UniProtKB/TrEMBL  Length:111

    Alignment length:108
                                    12        22        32        42        52        62        72        82        92       102        
         Q81C15_BACCR     3 YMFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVMIRWESEEAWKNWETSEEHLAGHRAGRGKPKPDHIINVDHAVYYVKSSKAAYQQ 110
               SCOP domains d1tz0c_ C: Hypothetical protein BC2969                                                                       SCOP domains
               CATH domains 1tz0C00 C:3-110  [code=3.30.70.900, no name defined]                                                         CATH domains
           Pfam domains (1) -ABM-1tz0C01 C:4-76                                                       ---------------------------------- Pfam domains (1)
           Pfam domains (2) -ABM-1tz0C02 C:4-76                                                       ---------------------------------- Pfam domains (2)
           Pfam domains (3) -ABM-1tz0C03 C:4-76                                                       ---------------------------------- Pfam domains (3)
         Sec.struct. author .eeeeeeeeee...hhhhhhhhh....hhhhh..eeeeeeee.......eeeeeeeee.hhhhhhhhhh.....-------...hhh.eeeeeeeeeee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1tz0 C   3 YmFIETKTFTVKEGTSNIVVERFTGEGIIEKFEGFIDLSVLVKKVRRGDEEVVVmIRWESEEAWKNWETSEEHL-------GKPKPDHIINVDHAVYYVKSSKAAYQQ 110
                             |      12        22        32        42        52    |   62        72   |     - |      92       102        
                             4-MSE                                               57-MSE             76      84

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: Dimeric alpha+beta barrel (122)

Family: PG130-like (12)

Protein domain: Hypothetical protein BC2969 (1)

Bacillus cereus [TaxId: 1396] (1)

1a	d1tz0a_	A:
1b	d1tz0b_	B:
1c	d1tz0c_	C:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.900, no name defined] (47)

Bacillus cereus atcc 14579. Organism_taxid: 226900. Strain: atcc 14579/ dsm 31. (1)

1a	1tz0A00	A:2-109
1b	1tz0C00	C:3-110
1c	1tz0B00	B:2-107

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Dim_A_B_barrel (36)

Family: ABM (9)

Bacillus cereus (strain ATCC 14579 / DSM 31) (1)

1a	ABM-1tz0C01	C:4-76
1b	ABM-1tz0C02	C:4-76
1c	ABM-1tz0C03	C:4-76

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1TZ0)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
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		Gly A:84 - Lys A:85	[ RasMol ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (2, 2)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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