1TWY - JenaLib

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Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Biological Unit 7 (Jmol Viewer)

Biological Unit 8 (Jmol Viewer)

Biological Unit 9 (Jmol Viewer)

Biological Unit 10 (Jmol Viewer)

Biological Unit 11 (Jmol Viewer)

Biological Unit 12 (Jmol Viewer)

Biological Unit 13 (Jmol Viewer)

Biological Unit 14 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF AN ABC-TYPE PHOSPHATE TRANSPORT RECEPTOR FROM VIBRIO CHOLERAE

Authors :   U. A. Ramagopal, Y. Patskovsky, S. C. Almo, S. K. Burley, New York Sgx Center For Structural Genomics (Nysgxrc)

Date :   01 Jul 04 (Deposition) - 21 Dec 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.65

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: E  (1x)
Biol. Unit 6: F  (1x)
Biol. Unit 7: G  (1x)
Biol. Unit 8: H  (1x)
Biol. Unit 9: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 10: A (1x),B (1x),C (1x),D (1x)
Biol. Unit 11: E (1x),F (1x),G (1x),H (1x)
Biol. Unit 12: A (1x),D (1x)
Biol. Unit 13: F (1x),G (1x)
Biol. Unit 14: B (1x),C (1x)

Keywords :   Abc Transporter, Nysgxrc Target, Structural Genomics, Protein Structure Initiative, Psi, New York Sgx Research Center For Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   U. A. Ramagopal, Y. Patskovsky, S. C. Almo
Crystal Structure Of Hypothetical Abc-Type Phosphate Transporter
To Be Published
PubMed: search

Molecule 1 - ABC TRANSPORTER, PERIPLASMIC SUBSTRATE-BINDING PROTEIN
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Organism Scientific	:	VIBRIO CHOLERAE O1 BIOVAR ELTOR
	Organism Taxid	:	243277
	Strain	:	N16961

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:					E
Biological Unit 6 (1x)	:						F
Biological Unit 7 (1x)	:							G
Biological Unit 8 (1x)	:								H
Biological Unit 9 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)	G (1x)	H (1x)
Biological Unit 10 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)
Biological Unit 11 (1x)	:					E (1x)	F (1x)	G (1x)	H (1x)
Biological Unit 12 (1x)	:	A (1x)			D (1x)
Biological Unit 13 (1x)	:						F (1x)	G (1x)
Biological Unit 14 (1x)	:		B (1x)	C (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 57)

No.	Name	Count	Type	Full Name
1	MG	1	Ligand/Ion	MAGNESIUM ION
2	MSE	48	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	8	Ligand/Ion	PHOSPHATE ION

Biological Unit 1 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 2 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 3 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 4 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 5 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 6 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 7 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 8 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 9 (2, 14)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 10 (2, 14)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 11 (2, 14)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	2	Ligand/Ion	PHOSPHATE ION

Biological Unit 12 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 13 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Biological Unit 14 (2, 7)

No.	Name	Count	Type	Full Name
1	MG	-1	Ligand/Ion	MAGNESIUM ION
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE
3	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	SER A:35 , THR A:36 , SER A:37 , GLY A:64 , SER A:65 , SER A:83 , HOH A:1538 , HOH A:1546 , HOH A:1557	BINDING SITE FOR RESIDUE PO4 A 1500
2	AC2	SOFTWARE	THR B:36 , SER B:37 , ARG B:40 , ARG B:149 , SER B:153 , GLY B:154 , THR B:155 , HOH B:1506 , HOH B:1576 , HOH B:1690	BINDING SITE FOR RESIDUE PO4 B 1501
3	AC3	SOFTWARE	SER D:35 , THR D:36 , SER D:37 , GLY D:64 , SER D:65 , SER D:83 , GLY D:154 , HOH D:1534 , HOH D:1541 , HOH D:1561	BINDING SITE FOR RESIDUE PO4 D 1502
4	AC4	SOFTWARE	SER E:35 , THR E:36 , SER E:37 , GLY E:64 , SER E:65 , SER E:83 , GLY E:154 , HOH E:1548 , HOH E:1558 , HOH E:1583 , HOH E:1660	BINDING SITE FOR RESIDUE PO4 E 1503
5	AC5	SOFTWARE	THR F:36 , SER F:37 , ARG F:40 , ARG F:149 , SER F:153 , GLY F:154 , THR F:155 , HOH F:1575 , HOH F:1635 , HOH F:1651	BINDING SITE FOR RESIDUE PO4 F 1504
6	AC6	SOFTWARE	THR G:36 , SER G:37 , ARG G:40 , ARG G:149 , SER G:153 , GLY G:154 , THR G:155 , HOH G:1528 , HOH G:1576	BINDING SITE FOR RESIDUE PO4 G 1505
7	AC7	SOFTWARE	SER H:35 , THR H:36 , SER H:37 , GLY H:64 , SER H:65 , SER H:83 , GLY H:154 , HOH H:1542 , HOH H:1552 , HOH H:1588	BINDING SITE FOR RESIDUE PO4 H 1506
8	AC8	SOFTWARE	THR C:36 , SER C:37 , ARG C:40 , ARG C:149 , SER C:153 , THR C:155 , HOH C:1538 , HOH C:1666	BINDING SITE FOR RESIDUE PO4 C 1507
9	AC9	SOFTWARE	GLY A:164 , THR A:166 , HOH A:1509 , HOH A:1510 , HOH A:1511	BINDING SITE FOR RESIDUE MG A 1508

(no "SS Bond" information available for 1TWY)

(no "Cis Peptide Bond" information available for 1TWY)

(no "SAP(SNP)/Variant" information available for 1TWY)

(no "PROSITE Motif" information available for 1TWY)

(no "Exon" information available for 1TWY)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:249
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:249
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265         
         Q9KLD9_VIBCH    26 SEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twya_ A: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                 SCOP domains
               CATH domains 1twyA01 A:28-103,A:238-276 Periplasmic binding protein-like II              1twyA02 A:104-237 Periplasmic binding protein-like II                                                                                 1twyA01 A:28-103,A:238-276              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.............eeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.eeee..eeee......eee.hhhhhhhhhhhh..eeeeee.hhh....ee.ee.....hhhhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy A  28 SEITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKTVKDREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    37    |   47        57        67        77   |    87        97       107       117       127       137       147       157     | 167       177       187 ||    197       207       217       227       237       247       257       267       | 
                                         42-MSE                                 81-MSE                                                                           163-MSE                   189-MSE                                                                               275-MSE
                                                                                                                                                                                            190-MSE

Chain B from PDB  Type:PROTEIN  Length:244
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:248
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266        
         Q9KLD9_VIBCH    27 EITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twyb_ B: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                SCOP domains
               CATH domains 1twyB01 B:29-103,B:238-276 Periplasmic binding protein-like II             1twyB02 B:104-237 Periplasmic binding protein-like II                                                                                 1twyB01 B:29-103,B:238-276              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeehhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh....eeee............eeeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.ee----..ee......eee.hhhhhhhhhhhh..eeeeee.hhh....eeeee.....hhhhhhh.....eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy B  29 EITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTK----REVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    38   |    48        58        68        78  |     88        98       108       118       128       138       148       158    |   |-   |   178       188||     198       208       218       228       238       248       258       268      | 
                                        42-MSE                                 81-MSE                                                                           163-MSE  172              189-MSE                                                                               275-MSE
                                                                                                                                                                                           190-MSE

Chain C from PDB  Type:PROTEIN  Length:249
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:249
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265         
         Q9KLD9_VIBCH    26 SEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twyc_ C: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                 SCOP domains
               CATH domains 1twyC01 C:28-103,C:238-276 Periplasmic binding protein-like II              1twyC02 C:104-237 Periplasmic binding protein-like II                                                                                 1twyC01 C:28-103,C:238-276              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee............eeeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.eeee..eeee......eee.hhhhhhhhhhhh..eeeeee.hhh....ee.ee.....hhhhhhh.....eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy C  28 SEITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKTVKDREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    37    |   47        57        67        77   |    87        97       107       117       127       137       147       157     | 167       177       187 ||    197       207       217       227       237       247       257       267       | 
                                         42-MSE                                 81-MSE                                                                           163-MSE                   189-MSE                                                                               275-MSE
                                                                                                                                                                                            190-MSE

Chain D from PDB  Type:PROTEIN  Length:249
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:249
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265         
         Q9KLD9_VIBCH    26 SEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twyd_ D: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                 SCOP domains
               CATH domains 1twyD01 D:28-102,D:238-276 Periplasmic binding protein-like II             1twyD02 D:103-237 Periplasmic binding protein-like II                                                                                  1twyD01 D:28-102,D:238-276              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.............eeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.eee....eee......eee.hhhhhhhhhhhh..eeeeee.hhh....ee.ee.....hhhhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy D  28 SEITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKTVKDREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    37    |   47        57        67        77   |    87        97       107       117       127       137       147       157     | 167       177       187 ||    197       207       217       227       237       247       257       267       | 
                                         42-MSE                                 81-MSE                                                                           163-MSE                   189-MSE                                                                               275-MSE
                                                                                                                                                                                            190-MSE

Chain E from PDB  Type:PROTEIN  Length:248
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:248
                                    36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266        
         Q9KLD9_VIBCH    27 EITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twye_ E: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                SCOP domains
               CATH domains 1twyE01 E:29-103,E:238-276 Periplasmic binding protein-like II             1twyE02 E:104-237 Periplasmic binding protein-like II                                                                                 1twyE01 E:29-103,E:238-276              CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeehhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh....eeee.............eeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.eeee..eeee......eee.hhhhhhhhhhhh..eeeeee.hhh....eeeee.....hhhhhhh.....eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy E  29 EITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKTVKDREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    38   |    48        58        68        78  |     88        98       108       118       128       138       148       158    |  168       178       188||     198       208       218       228       238       248       258       268      | 
                                        42-MSE                                 81-MSE                                                                           163-MSE                   189-MSE                                                                               275-MSE
                                                                                                                                                                                           190-MSE

Chain F from PDB  Type:PROTEIN  Length:247
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:249
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265         
         Q9KLD9_VIBCH    26 SEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twyf_ F: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                 SCOP domains
               CATH domains 1twyF01 F:28-103,F:238-276 Periplasmic binding protein-like II              1twyF02 F:104-237 Periplasmic binding protein-like II                                                                                 1twyF01 F:28-103,F:238-276              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeehhhhhhhhhhhhhhhhhhh....eeeee.hhhhhhhhhhh....eeee............eeeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.ee.--...ee......eee.hhhhhhhhhhhh..eeeeee.hhh....ee.ee.....hhhhhhh.....eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy F  28 SEITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKT--DREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    37    |   47        57        67        77   |    87        97       107       117       127       137       147       157     | 167|  |   177       187 ||    197       207       217       227       237       247       257       267       | 
                                         42-MSE                                 81-MSE                                                                           163-MSE8  |               189-MSE                                                                               275-MSE
                                                                                                                                                                         171                190-MSE

Chain G from PDB  Type:PROTEIN  Length:249
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:249
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265         
         Q9KLD9_VIBCH    26 SEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twyg_ G: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                 SCOP domains
               CATH domains 1twyG01 G:28-103,G:238-276 Periplasmic binding protein-like II              1twyG02 G:104-237 Periplasmic binding protein-like II                                                                                 1twyG01 G:28-103,G:238-276              CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee............eeeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.eee....eee......eee.hhhhhhhhhhhh..eeeeee.hhh....eeeee.....hhhhhhh.....eeeeeeeee....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy G  28 SEITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKTVKDREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    37    |   47        57        67        77   |    87        97       107       117       127       137       147       157     | 167       177       187 ||    197       207       217       227       237       247       257       267       | 
                                         42-MSE                                 81-MSE                                                                           163-MSE                   189-MSE                                                                               275-MSE
                                                                                                                                                                                            190-MSE

Chain H from PDB  Type:PROTEIN  Length:249
 aligned with Q9KLD9_VIBCH | Q9KLD9 from UniProtKB/TrEMBL  Length:278

    Alignment length:249
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265         
         Q9KLD9_VIBCH    26 SEITISGSTSVARIMDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAMTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLMGLTKTVKDREVSDVAPTALVVNSNSMMKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYIMP 274
               SCOP domains d1twyh_ H: ABC transporter, periplasmic substrate-binding protein VCA0807                                                                                                                                                                                 SCOP domains
               CATH domains 1twyH01 H:28-103,H:238-276 Periplasmic binding protein-like II              1twyH02 H:104-237 Periplasmic binding protein-like II                                                                                 1twyH01 H:28-103,H:238-276              CATH domains
           Pfam domains (1) PBP_like_2-1twyH01 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (1)
           Pfam domains (2) PBP_like_2-1twyH02 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (2)
           Pfam domains (3) PBP_like_2-1twyH03 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (3)
           Pfam domains (4) PBP_like_2-1twyH04 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (4)
           Pfam domains (5) PBP_like_2-1twyH05 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (5)
           Pfam domains (6) PBP_like_2-1twyH06 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (6)
           Pfam domains (7) PBP_like_2-1twyH07 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (7)
           Pfam domains (8) PBP_like_2-1twyH08 H:28-263                                                                                                                                                                                                                 ------------- Pfam domains (8)
         Sec.struct. author .eeeeeehhhhhhhhhhhhhhhhhhh...eeeeee.hhhhhhhhhhh....eeee.............eeeeeeeeeeeeee.......eehhhhhhhhhh....hhhhhh......eeeee...hhhhhhhhhhhh.eee....eee......eee.hhhhhhhhhhh...eeeeee.hhh....ee.ee.....hhhhhhh.....eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhh..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1twy H  28 SEITISGSTSVARImDVLAEKYNQQHPETYVAVQGVGSTAGISLLKKGVADIAmTSRYLTESEAQNTLHTFTLAFDGLAIVVNQANPVTNLTREQLYGIYKGQITNWKQVGGNDQKIAVVTREASSGTRYSFESLmGLTKTVKDREVSDVAPTALVVNSNSmmKTLVNHNTQAVGFISIGSVDKSVKAIQFEKADPTSDNIAKHTYQLSRPFLILHYSDNADEQTKEFIAFLKSESAKKLIVEYGYImP 276
                                    37    |   47        57        67        77   |    87        97       107       117       127       137       147       157     | 167       177       187 ||    197       207       217       227       237       247       257       267       | 
                                         42-MSE                                 81-MSE                                                                           163-MSE                   189-MSE                                                                               275-MSE
                                                                                                                                                                                            190-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Periplasmic binding protein-like II (813)

Superfamily: Periplasmic binding protein-like II (813)

Family: Phosphate binding protein-like (463)

Protein domain: ABC transporter, periplasmic substrate-binding protein VCA0807 (1)

Vibrio cholerae [TaxId: 666] (1)

1a	d1twya_	A:
1b	d1twyb_	B:
1c	d1twyc_	C:
1d	d1twyd_	D:
1e	d1twye_	E:
1f	d1twyf_	F:
1g	d1twyg_	G:
1h	d1twyh_	H:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: D-Maltodextrin-Binding Protein; domain 2 (600)

Homologous Superfamily: Periplasmic binding protein-like II (486)

N16961 (Vibrio cholerae o1 biovar eltor str) (1)

1a	1twyD02	D:103-237
1b	1twyA02	A:104-237
1c	1twyF01	F:28-103,F:238-276
1d	1twyG01	G:28-103,G:238-276
1e	1twyH01	H:28-103,H:238-276
1f	1twyB01	B:29-103,B:238-276
1g	1twyD01	D:28-102,D:238-276
1h	1twyE01	E:29-103,E:238-276
1i	1twyC02	C:104-237
1j	1twyE02	E:104-237
1k	1twyG02	G:104-237
1l	1twyH02	H:104-237
1m	1twyF02	F:104-237
1n	1twyB02	B:104-237
1o	1twyA01	A:28-103,A:238-276
1p	1twyC01	C:28-103,C:238-276

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: PBP (391)

Family: PBP_like_2 (13)

Vibrio cholerae (1)

1a	PBP_like_2-1twyH01	H:28-263
1b	PBP_like_2-1twyH02	H:28-263
1c	PBP_like_2-1twyH03	H:28-263
1d	PBP_like_2-1twyH04	H:28-263
1e	PBP_like_2-1twyH05	H:28-263
1f	PBP_like_2-1twyH06	H:28-263
1g	PBP_like_2-1twyH07	H:28-263
1h	PBP_like_2-1twyH08	H:28-263

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (Q9KLD9_VIBCH | Q9KLD9)

molecular function
	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
	GO:0015415	ATPase-coupled phosphate ion transmembrane transporter activity	Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + phosphate(out) = ADP + phosphate + phosphate(in).
	GO:0042301	phosphate ion binding	Interacting selectively and non-covalently with phosphate.
biological process
	GO:0016036	cellular response to phosphate starvation	Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of deprivation of phosphate.
	GO:0035435	phosphate ion transmembrane transport	The directed movement of phosphate across a membrane by means of some agent such as a transporter or pore.
	GO:0006817	phosphate ion transport	The directed movement of phosphate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0055085	transmembrane transport	The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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Description

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Ligands, Modified Residues, Ions (3, 57)

Sites (9, 9)

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