1TUY - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   ACETATE KINASE COMPLEXED WITH ADP, ALF3 AND ACETATE

Authors :   A. Gorrell, S. H. Lawrence, J. G. Ferry

Date :   25 Jun 04 (Deposition) - 11 Jan 05 (Release) - 10 Sep 14 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Alpha/Beta, Askha (Acetate And Sugar Kinases, Hsc70, Actin) Superfamily, Alf3 And Acetate, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Gorrell, S. H. Lawrence, J. G. Ferry
Structural And Kinetic Analyses Of Arginine Residues In The Active Site Of The Acetate Kinase From Methanosarcina Thermophila.
J. Biol. Chem. V. 280 10731 2005
PubMed-ID: 15647264 | Reference-DOI: 10.1074/JBC.M412118200

Molecule 1 - ACETATE KINASE
	Chains	:	A, B
	EC Number	:	2.7.2.1
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET-AK
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PET-15B
	Gene	:	ACKA, ACK
	Organism Scientific	:	METHANOSARCINA THERMOPHILA
	Organism Taxid	:	2210
	Synonym	:	ACETOKINASE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 5)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	ADP	2	Ligand/Ion	ADENOSINE-5'-DIPHOSPHATE
3	AF3	1	Ligand/Ion	ALUMINUM FLUORIDE
4	SO4	1	Ligand/Ion	SULFATE ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:91 , HIS A:123 , HIS A:180 , GLY A:212 , ARG A:241	BINDING SITE FOR RESIDUE SO4 A 400
2	AC2	SOFTWARE	LYS A:14 , GLY A:210 , ASN A:211 , ASP A:283 , PHE A:284 , ARG A:285 , GLY A:331 , ILE A:332 , ASN A:335 , SER A:336	BINDING SITE FOR RESIDUE ADP A 401
3	AC3	SOFTWARE	GLY B:210 , ASN B:211 , ASP B:283 , PHE B:284 , ARG B:285 , ALA B:330 , GLY B:331 , ILE B:332 , ASN B:335 , ARG B:362 , AF3 B:448 , HOH B:457	BINDING SITE FOR RESIDUE ADP B 400
4	AC4	SOFTWARE	HIS B:180 , ADP B:400 , ACY B:425	BINDING SITE FOR RESIDUE AF3 B 448
5	AC5	SOFTWARE	VAL B:93 , HIS B:94 , ARG B:241 , AF3 B:448 , HOH B:450	BINDING SITE FOR RESIDUE ACY B 425

(no "SS Bond" information available for 1TUY)

(no "Cis Peptide Bond" information available for 1TUY)

(no "SAP(SNP)/Variant" information available for 1TUY)

Asymmetric/Biological Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ACETATE_KINASE_1	PS01075	Acetate and butyrate kinases family signature 1.	ACKA_METTE	3-14	2	A:3-14 B:3-14
2	ACETATE_KINASE_2	PS01076	Acetate and butyrate kinases family signature 2.	ACKA_METTE	204-221	2	A:204-221 B:204-221

(no "Exon" information available for 1TUY)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:399
 aligned with ACKA_METTE | P38502 from UniProtKB/Swiss-Prot  Length:408

    Alignment length:399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390         
           ACKA_METTE     1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITAVEGGKSVETSMGFTPLEGLAMGTRCGSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDEKNKIRGQEIDISTPDAKVRVFVIPTNEELAIARETKEIVETE 399
               SCOP domains d1tuya1 A:1-197 Acetate kinase                                                                                                                                                                       d1tuya2 A:198-398 Acetate kinase                                                                                                                                                                         - SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1tuyA02 A:197-399  [code=3.30.420.40, no name defined]                                                                                                                                                      CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee....eeeeeeeee.......eeeeee....eeee.....hhhhhhhhhhhhhh........hhhhh.eeeeee..........ee.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....eeeee.hhhhh..hhhhhh....hhhhhhh.......hhhhhhhhhhhhhhhhh.hhhh.eeeeee.....eeeeee..eeeee.....................hhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhhhhhhhhh.hhhhh.....hhhhh....ee........eeee...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --ACETATE_KINA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACETATE_KINASE_2  ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tuy A   1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITAVEGGKSVETSMGFTPLEGLAMGTRCGSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDEKNKIRGQEIDISTPDAKVRVFVIPTNEELAIARETKEIVETE 399
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Chain B from PDB  Type:PROTEIN  Length:398
 aligned with ACKA_METTE | P38502 from UniProtKB/Swiss-Prot  Length:408

    Alignment length:398
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390        
           ACKA_METTE     1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITAVEGGKSVETSMGFTPLEGLAMGTRCGSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDEKNKIRGQEIDISTPDAKVRVFVIPTNEELAIARETKEIVET 398
               SCOP domains d1tuyb1 B:1-197 Acetate kinase                                                                                                                                                                       d1tuyb2 B:198-398 Acetate kinase                                                                                                                                                                          SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1tuyB02 B:197-398  [code=3.30.420.40, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee....eeeeeee....eeeeeeeee.......eeeeee...eeeee.....hhhhhhhhhhhhhhh.......hhhhh..eeeee.............hhhhhhhhhhh..........hhhhhhhhhhhh....eeeee.hhhhhhhhhhhhh...hhhhhhhh.......hhhhhhhhhhhhhhhh..hhhh.eeeeee.....eeeeee..eeeee.....................hhhhhhhhhh..hhhhhhhhhhh.hhhhhhhh...hhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhh.hhhhh...hhhhhhh....ee........eeee...hhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --ACETATE_KINA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACETATE_KINASE_2  --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tuy B   1 MKVLVINAGSSSLKYQLIDMTNESALAVGLCERIGIDNSIITQKKFDGKKLEKLTDLPTHKDALEEVVKALTDDEFGVIKDMGEINAVGHRVVHGGEKFTTSALYDEGVEKAIKDCFELAPLHNPPNMMGISACAEIMPGTPMVIVFDTAFHQTMPPYAYMYALPYDLYEKHGVRKYGFHGTSHKYVAERAALMLGKPAEETKIITCHLGNGSSITAVEGGKSVETSMGFTPLEGLAMGTRCGSIDPAIVPFLMEKEGLTTREIDTLMNKKSGVLGVSGLSNDFRDLDEAASKGNRKAELALEIFAYKVKKFIGEYSAVLNGADAVVFTAGIGENSASIRKRILTGLDGIGIKIDDEKNKIRGQEIDISTPDAKVRVFVIPTNEELAIARETKEIVET 398
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Ribonuclease H-like motif (1424)

Superfamily: Actin-like ATPase domain (426)

Family: Acetokinase-like (17)

Protein domain: Acetate kinase (3)

Methanosarcina thermophila [TaxId: 2210] (3)

1a	d1tuya1	A:1-197
1b	d1tuyb1	B:1-197
1c	d1tuyb2	B:198-398
1d	d1tuya2	A:198-398

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Nucleotidyltransferase; domain 5 (788)

Homologous Superfamily: [code=3.30.420.40, no name defined] (217)

Methanosarcina thermophila. Organism_taxid: 2210. (3)

1a	1tuyB02	B:197-398
1b	1tuyA02	A:197-399

(no "Pfam Domain" information available for 1TUY)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B (ACKA_METTE | P38502)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0008776	acetate kinase activity	Catalysis of the reaction: ATP + acetate = ADP + acetyl phosphate.
	GO:0016301	kinase activity	Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
	GO:0000287	magnesium ion binding	Interacting selectively and non-covalently with magnesium (Mg) ions.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0016774	phosphotransferase activity, carboxyl group as acceptor	Catalysis of the transfer of a phosphorus-containing group from one compound (donor) to a carboxyl group (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006085	acetyl-CoA biosynthetic process	The chemical reactions and pathways resulting in the formation of acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0006082	organic acid metabolic process	The chemical reactions and pathways involving organic acids, any acidic compound containing carbon in covalent linkage.
	GO:0016310	phosphorylation	The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1tuy)

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	1tuy
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	ACKA_METTE \| P38502	:	1g99 1tuu

1tuu	ACETATE KINASE COMPLEXED WITH ATPGS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 2)

Pfam Domains (0, 0)

Gene Ontology (14, 14)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File