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(-) Description

Title :  SOLUTION STRUCTURE OF THE HONEY BEE GENERAL ODORANT BINDING PROTEIN ASP2 IN COMPLEX WITH TRIMETHYLSILYL-D4 PROPIONATE
 
Authors :  E. Lescop, L. Briand, J. -C. Pernollet, E. Guittet
Date :  25 Jun 04  (Deposition) - 20 Sep 05  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (17x)
Keywords :  Alpha Helix, Complex, Tsp, Odorant-Binding Protein, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Lescop, L. Briand, J. -C. Pernollet, E. Guittet
Solution Structure Of The Honey Bee General Odorant Binding Protein Asp2 In Complex With Trimethylsilyl-D4 Propionate
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ODORANT BINDING PROTEIN ASP2
    Chains: A
    Engineered: YES
    Expression System: PICHIA PASTORIS
    Expression System Plasmid: PNATASP2
    Expression System Strain: GS115
    Expression System Taxid: 4922
    Expression System Vector Type: PHIL-D2
    Fragment: RESIDUES 1-123
    Gene: ASP2
    Organism Common: HONEY BEE
    Organism Scientific: APIS MELLIFERA
    Organism Taxid: 7460

 Structural Features

(-) Chains, Units

  
NMR Structure (17x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

NMR Structure (1, 1)
No.NameCountTypeFull Name
1TSD1Ligand/Ion3-TRIMETHYLSILYL-PROPIONATE-2,2,3,3,-D4

(-) Sites  (1, 1)

NMR Structure (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:10 , LYS A:51BINDING SITE FOR RESIDUE TSD A 124

(-) SS Bonds  (3, 3)

NMR Structure
No.Residues
1A:21 -A:53
2A:49 -A:107
3A:96 -A:116

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TUJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1TUJ)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:123
 aligned with Q9U9J5_APIME | Q9U9J5 from UniProtKB/TrEMBL  Length:142

    Alignment length:123
                                    29        39        49        59        69        79        89        99       109       119       129       139   
         Q9U9J5_APIME    20 IDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAAKNGADMSQLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAGNADDIQLVKGIANECIENAKGETDECNIGNKYTDCYIEKLFS 142
               SCOP domains --------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains PBP_GOBP-1tujA01 A:1-121                                                                                                 -- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhh..ee..ee.hhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tuj A   1 IDQDTVVAKYMEYLMPDIMPCADELHISEDIATNIQAAKNGADMSQLGCLKACVMKRIEMLKGTELYVEPVYKMIEVVHAGNADDIQLVKGIANECIENAKGETDECNIGNKYTDCYIEKLFS 123
                                    10        20        30        40        50        60        70        80        90       100       110       120
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1TUJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1TUJ)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: PBP_GOBP] (36)

(-) Gene Ontology  (1, 1)

NMR Structure(hide GO term definitions)
Chain A   (Q9U9J5_APIME | Q9U9J5)
molecular function
    GO:0005549    odorant binding    Interacting selectively and non-covalently with an odorant, any substance capable of stimulating the sense of smell.

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