1TN1 - JenaLib

Title :   CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE TRNA

Authors :   J. C. Dewan, R. S. Brown, B. E. Hingerty, A. Klug

Date :   04 Dec 86 (Deposition) - 15 Jan 87 (Release) - 25 May 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A

Keywords :   Translation, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. S. Brown, J. C. Dewan, A. Klug
Crystallographic And Biochemical Investigation Of The Lead(Ii)-Catalyzed Hydrolysis Of Yeast Phenylalanine Trna.
Biochemistry V. 24 4785 1985
PubMed-ID: 3907691 | Reference-DOI: 10.1021/BI00339A012
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (14, 23)

Asymmetric/Biological Unit (14, 23)

No.	Name	Count	Type	Full Name
1	1MA	1	Mod. Nucleotide	6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2	2MG	1	Mod. Nucleotide	2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3	5MC	2	Mod. Nucleotide	5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4	5MU	1	Mod. Nucleotide	5-METHYLURIDINE 5'-MONOPHOSPHATE
5	7MG	1	Mod. Nucleotide	7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6	H2U	2	Mod. Nucleotide	5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7	M2G	1	Mod. Nucleotide	N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8	MG	5	Ligand/Ion	MAGNESIUM ION
9	OMC	1	Mod. Nucleotide	O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
10	OMG	1	Mod. Nucleotide	O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
11	PB	3	Ligand/Ion	LEAD (II) ION
12	PSU	2	Mod. Nucleotide	PSEUDOURIDINE-5'-MONOPHOSPHATE
13	SPM	1	Ligand/Ion	SPERMINE
14	YG	1	Mod. Residue	WYBUTOSINE

Sites (7, 7)

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	A A:9 , G A:22 , A A:23 , G A:24 , C A:25 , G A:45 , 7MG A:46 , PB A:84 , HOH A:162 , HOH A:181 , HOH A:182 , HOH A:190	BINDING SITE FOR RESIDUE SPM A 77
2	AC2	SOFTWARE	U A:12 , HOH A:93 , HOH A:150 , HOH A:175	BINDING SITE FOR RESIDUE MG A 78
3	AC3	SOFTWARE	G A:20 , A A:21 , HOH A:106	BINDING SITE FOR RESIDUE MG A 79
4	AC4	SOFTWARE	G A:19 , G A:20 , U A:59 , PB A:83	BINDING SITE FOR RESIDUE MG A 80
5	AC5	SOFTWARE	G A:19 , U A:59 , C A:60 , MG A:80	BINDING SITE FOR RESIDUE PB A 83
6	AC6	SOFTWARE	G A:45 , SPM A:77 , HOH A:181 , HOH A:182 , HOH A:190	BINDING SITE FOR RESIDUE PB A 84
7	AC7	SOFTWARE	OMC A:32 , U A:33 , A A:36 , YG A:37	BINDING SITE FOR RESIDUE PB A 85

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

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Chain A from PDB  Type:RNA  Length:76
                                                                                                           
                  1tn1 A  1 GCGGAUUUAgCUCAGuuGGGAGAGCgCCAGAcUgAAgAucUGGAGgUCcUGUGuuCGaUCCACAGAAUUCGCACCA 76
                                    10     || 20     |  30 | |  | 40     |  50   ||  |60        70      
                                    10-2MG ||       26-M2G | |  | ||     |  |    55-PSU                 
                                          16-H2U          32-OMC| ||     |  |    |  58-1MA              
                                           17-H2U           34-OMG||     |  |    |                      
                                                               37-YG     |  |    |                      
                                                                 39-PSU  |  |    |                      
                                                                  40-5MC |  |    |                      
                                                                        46-7MG   |                      
                                                                           49-5MC|                      
                                                                                54-5MU

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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