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(-) Description

Title :  THE STRUCTURE OF A SUBSTRATE-LIGANDED COMPLEX OF THE L-ALA-D/L-GLU EPIMERASE FROM BACILLUS SUBTILIS
 
Authors :  V. A. Klenchin, D. M. Schmidt, J. A. Gerlt, I. Rayment
Date :  08 Jun 04  (Deposition) - 31 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Epimerase, Enolase Super Family, , Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. A. Klenchin, D. M. Schmidt, J. A. Gerlt, I. Rayment
Evolution Of Enzymatic Activities In The Enolase Superfamily: Structure Of A Substrate-Liganded Complex Of The L-Ala-D/L-Glu Epimerase From Bacillus Subtilis(, ).
Biochemistry V. 43 10370 2004
PubMed-ID: 15301535  |  Reference-DOI: 10.1021/BI049197O
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SIMILAR TO CHLOROMUCONATE CYCLOISOMERASE
    Chains: A, B, C, D, E, F, G, H
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET17B
    Expression System Strain: BL21 (DE3)
    Expression System Taxid: 469008
    Fragment: YKFB
    Gene: YKFB
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 24)

Asymmetric/Biological Unit (3, 24)
No.NameCountTypeFull Name
1ALA8Mod. Amino AcidALANINE
2GLU8Mod. Amino AcidGLUTAMIC ACID
3MG8Ligand/IonMAGNESIUM ION

(-) Sites  (24, 24)

Asymmetric Unit (24, 24)
No.NameEvidenceResiduesDescription
01AC1SOFTWARELYS A:160 , ASP A:191 , GLU A:219 , ASP A:244 , GLU A:2471 , HOH A:2472BINDING SITE FOR RESIDUE MG A 1601
02AC2SOFTWARELYS B:160 , ASP B:191 , GLU B:219 , ASP B:244 , GLU B:2473 , HOH B:2474BINDING SITE FOR RESIDUE MG B 1602
03AC3SOFTWARELYS C:160 , ASP C:191 , GLU C:219 , ASP C:244 , GLU C:2475 , HOH C:2476BINDING SITE FOR RESIDUE MG C 1603
04AC4SOFTWAREASP D:191 , ASN D:193 , GLU D:219 , ASP D:244 , GLU D:2477 , HOH D:2478BINDING SITE FOR RESIDUE MG D 1604
05AC5SOFTWAREASP E:191 , GLU E:219 , ASP E:244 , GLU E:2479 , HOH E:2480BINDING SITE FOR RESIDUE MG E 1605
06AC6SOFTWAREASP F:191 , GLU F:219 , ASP F:244 , GLU F:2481 , HOH F:2482BINDING SITE FOR RESIDUE MG F 1606
07AC7SOFTWARELYS G:160 , ASP G:191 , GLU G:219 , ASP G:244 , GLU G:2483 , HOH G:2484BINDING SITE FOR RESIDUE MG G 1607
08AC8SOFTWARELYS H:160 , ASP H:191 , GLU H:219 , ASP H:244 , GLU H:2485 , HOH H:2486BINDING SITE FOR RESIDUE MG H 1608
09AC9SOFTWAREPHE A:19 , THR A:135 , LYS A:160 , LYS A:162 , ASP A:321 , ASP A:323 , GLU A:2471BINDING SITE FOR RESIDUE ALA A 2470
10BC1SOFTWAREPHE A:19 , ARG A:24 , ILE A:54 , LYS A:160 , LYS A:162 , ASP A:191 , ASP A:244 , LYS A:268 , SER A:296 , MET A:297 , ILE A:298 , MG A:1601 , ALA A:2470 , HOH A:2541 , HOH A:2577BINDING SITE FOR RESIDUE GLU A 2471
11BC2SOFTWAREPHE B:19 , THR B:135 , LYS B:160 , LYS B:162 , ASP B:321 , ASP B:323 , GLU B:2473BINDING SITE FOR RESIDUE ALA B 2472
12BC3SOFTWAREPHE B:19 , ARG B:24 , ILE B:54 , LYS B:160 , LYS B:162 , ASP B:191 , GLU B:219 , ASP B:244 , LYS B:268 , SER B:296 , ILE B:298 , MG B:1602 , ALA B:2472 , HOH B:2484 , HOH B:2510BINDING SITE FOR RESIDUE GLU B 2473
13BC4SOFTWARETHR C:135 , LYS C:160 , LYS C:162 , ASP C:321 , ASP C:323 , GLU C:2475BINDING SITE FOR RESIDUE ALA C 2474
14BC5SOFTWAREPHE C:19 , ARG C:24 , ILE C:54 , LYS C:160 , LYS C:162 , ASP C:191 , ASP C:244 , LYS C:268 , SER C:296 , MET C:297 , ILE C:298 , MG C:1603 , ALA C:2474 , HOH C:2479BINDING SITE FOR RESIDUE GLU C 2475
15BC6SOFTWAREPHE D:19 , THR D:135 , LYS D:160 , LYS D:162 , ASP D:321 , ASP D:323 , GLU D:2477BINDING SITE FOR RESIDUE ALA D 2476
16BC7SOFTWAREPHE D:19 , ARG D:24 , ILE D:54 , LYS D:160 , LYS D:162 , ASP D:191 , ASP D:244 , LYS D:268 , SER D:296 , MET D:297 , ILE D:298 , MG D:1604 , ALA D:2476 , HOH D:2521 , HOH D:2530BINDING SITE FOR RESIDUE GLU D 2477
17BC8SOFTWARETHR E:135 , LYS E:160 , LYS E:162 , ASP E:321 , ASP E:323 , GLU E:2479BINDING SITE FOR RESIDUE ALA E 2478
18BC9SOFTWAREPHE E:19 , ARG E:24 , LYS E:160 , LYS E:162 , ASP E:244 , LYS E:268 , SER E:296 , ILE E:298 , MG E:1605 , ALA E:2478 , HOH E:2526 , HOH E:2528BINDING SITE FOR RESIDUE GLU E 2479
19CC1SOFTWAREPHE F:19 , THR F:135 , LYS F:160 , LYS F:162 , ASP F:321 , ASP F:323 , GLU F:2481BINDING SITE FOR RESIDUE ALA F 2480
20CC2SOFTWAREPHE F:19 , ARG F:24 , ILE F:54 , LYS F:160 , LYS F:162 , ASP F:191 , ASP F:244 , LYS F:268 , SER F:296 , MET F:297 , ILE F:298 , MG F:1606 , ALA F:2480 , HOH F:2531 , HOH F:2539BINDING SITE FOR RESIDUE GLU F 2481
21CC3SOFTWAREPHE G:19 , THR G:135 , LYS G:160 , LYS G:162 , SER G:296 , ASP G:321 , ASP G:323 , GLU G:2483BINDING SITE FOR RESIDUE ALA G 2482
22CC4SOFTWAREPHE G:19 , ARG G:24 , ILE G:54 , LYS G:160 , LYS G:162 , ASP G:191 , ASP G:244 , LYS G:268 , SER G:296 , MET G:297 , ILE G:298 , MG G:1607 , ALA G:2482 , HOH G:2519 , HOH G:2520BINDING SITE FOR RESIDUE GLU G 2483
23CC5SOFTWAREPHE H:19 , THR H:135 , LYS H:160 , LYS H:162 , ASP H:321 , ASP H:323 , GLU H:2485BINDING SITE FOR RESIDUE ALA H 2484
24CC6SOFTWAREARG H:24 , ILE H:54 , LYS H:160 , LYS H:162 , ASP H:191 , ASP H:244 , LYS H:268 , SER H:296 , MET H:297 , ILE H:298 , MG H:1608 , ALA H:2484 , HOH H:2493 , HOH H:2550BINDING SITE FOR RESIDUE GLU H 2485

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TKK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TKK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TKK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1TKK)

(-) Exons   (0, 0)

(no "Exon" information available for 1TKK)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:359
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
               SCOP domains -d1tkka2 A:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkka1 A:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                - SCOP domains
               CATH domains 1tkkA01 A:1-115 Enolase-like, N-terminal domain                                                                    1tkkA02 A:116-359 Enolase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhhh....eee..eee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh..eeee..hhhhhh....eee..eee..eee........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk A   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         


Chain B from PDB  Type:PROTEIN  Length:358
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAA 358
               SCOP domains -d1tkkb2 B:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkkb1 B:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                 SCOP domains
               CATH domains -1tkkB01 B:2-115 Enolase-like, N-terminal domain                                                                   1tkkB02 B:116-358 Enolase superfamily                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhh.....eee..eee...hhhhhhhhhhhhhh....eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh..eeee..hhhhhh.....ee..eee..eee........eee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk B   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAA 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain C from PDB  Type:PROTEIN  Length:359
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
               SCOP domains -d1tkkc2 C:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkkc1 C:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                - SCOP domains
               CATH domains -1tkkC01 C:2-115 Enolase-like, N-terminal domain                                                                   1tkkC02 C:116-359 Enolase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh..eeee..hhhhhh....eee..eee..eee........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk C   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         


Chain D from PDB  Type:PROTEIN  Length:359
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
               SCOP domains -d1tkkd2 D:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkkd1 D:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                - SCOP domains
               CATH domains -1tkkD01 D:2-115 Enolase-like, N-terminal domain                                                                   1tkkD02 D:116-359 Enolase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh.....eee......hhhhhhhhhhhh...eee.....hhhhhhhhhhh....eeeeehhhhhhhhhhhhhhhhhhhh...eeee....hhhhhhhhhhhhhhh..eeee..hhhhh.....eee..eee..eee........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk D   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         


Chain E from PDB  Type:PROTEIN  Length:359
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
               SCOP domains -d1tkke2 E:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkke1 E:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                - SCOP domains
               CATH domains -1tkkE01 E:2-115 Enolase-like, N-terminal domain                                                                   1tkkE02 E:116-359 Enolase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhh.....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh..eeee..hhhhhh....eee..eee..eee........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk E   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         


Chain F from PDB  Type:PROTEIN  Length:358
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAA 358
               SCOP domains -d1tkkf2 F:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkkf1 F:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                 SCOP domains
               CATH domains -1tkkF01 F:2-115 Enolase-like, N-terminal domain                                                                   1tkkF02 F:116-358 Enolase superfamily                                                                                                                                                                                                               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh..eeee..hhhhhh....eee..eee..eee........eeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk F   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAA 358
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350        


Chain G from PDB  Type:PROTEIN  Length:359
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
               SCOP domains -d1tkkg2 G:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkkg1 G:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                - SCOP domains
               CATH domains 1tkkG01 G:1-115 Enolase-like, N-terminal domain                                                                    1tkkG02 G:116-359 Enolase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh..hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhh....eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh...eee.....hhhhhhhhhhhhhhh..eeee..hhhhh.....eee..eee..eee........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk G   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         


Chain H from PDB  Type:PROTEIN  Length:359
 aligned with AEEP_BACSU | O34508 from UniProtKB/Swiss-Prot  Length:366

    Alignment length:359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350         
           AEEP_BACSU     1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
               SCOP domains -d1tkkh2 H:2-125 L-Ala-D/L-Glu epimerase                                                                                     d1tkkh1 H:126-358 L-Ala-D/L-Glu epimerase                                                                                                                                                                                                - SCOP domains
               CATH domains -1tkkH01 H:2-115 Enolase-like, N-terminal domain                                                                   1tkkH02 H:116-359 Enolase superfamily                                                                                                                                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeeeeeeeeee....eeeeeeeeeeeeee....eeeeee.........hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh.hhhhhh.....eee..eee...hhhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeee......hhhhhhhhhhhh...eee.....hhhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhhhhh..eeee..hhhhhh....eee..eee..eee........eeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1tkk H   1 MKIIRIETSRIAVPLTKPFKTALRTVYTAESVIVRITYDSGAVGWGEAPPTLVITGDSMDSIESAIHHVLKPALLGKSLAGYEAILHDIQHLLTGNMSAKAAVEMALYDGWAQMCGLPLYQMLGGYRDTLETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMEDAGLGIELVEQPVHKDDLAGLKKVTDATDTPIMADESVFTPRQAFEVLQTRSADLINIKLMKAGGISGAEKINAMAEACGVECMVGSMIETKLGITAAAHFAASKRNITRFDFDAPLMLKTDVFNGGITYSGSTISMPGKPGLGIIGAAL 359
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 16)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1TKK)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (AEEP_BACSU | O34508)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016853    isomerase activity    Catalysis of the geometric or structural changes within one molecule. Isomerase is the systematic name for any enzyme of EC class 5.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0016998    cell wall macromolecule catabolic process    The chemical reactions and pathways resulting in the breakdown of macromolecules that form part of a cell wall.
    GO:0071555    cell wall organization    A process that results in the assembly, arrangement of constituent parts, or disassembly of the cell wall, the rigid or semi-rigid envelope lying outside the cell membrane of plant, fungal and most prokaryotic cells, maintaining their shape and protecting them from osmotic lysis.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.

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  1tkk
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        AEEP_BACSU | O34508: 1jpm

(-) Related Entries Specified in the PDB File

1jpm APO YKFB