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(-) Description

Title :  NMR STRUCTURE OF WW DOMAINS (WW3-4) FROM SUPPRESSOR OF DELTEX
 
Authors :  O. Y. Fedoroff, J. M. Avis, A. P. Golovanov, M. Baron, S. A. Townson
Date :  08 Jun 04  (Deposition) - 20 Jul 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (7x)
Keywords :  Ww Domain, Notch, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  O. Y. Fedoroff, S. A. Townson, A. P. Golovanov, M. Baron, J. M. Avis
The Structure And Dynamics Of Tandem Ww Domains In A Negative Regulator Of Notch Signaling, Suppressor Of Deltex
J. Biol. Chem. V. 279 34991 2004
PubMed-ID: 15173166  |  Reference-DOI: 10.1074/JBC.M404987200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - CG4244-PB
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPGEX
    Expression System StrainBCL21
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneSU(DX)
    Organism CommonFRUIT FLY
    Organism ScientificDROSOPHILA MELANOGASTER
    Organism Taxid7227

 Structural Features

(-) Chains, Units

  
NMR Structure (7x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1TK7)

(-) Sites  (0, 0)

(no "Site" information available for 1TK7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1TK7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1TK7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1TK7)

(-) PROSITE Motifs  (2, 4)

NMR Structure (2, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1WW_DOMAIN_2PS50020 WW/rsp5/WWP domain profile.SUDX_DROME363-396
395-428
477-510
521-554
  2-
-
A:11-44
A:55-88
2WW_DOMAIN_1PS01159 WW/rsp5/WWP domain signature.SUDX_DROME401-426
483-508
527-552
  2-
A:17-42
A:61-86

(-) Exons   (0, 0)

(no "Exon" information available for 1TK7)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:88
 aligned with SUDX_DROME | Q9Y0H4 from UniProtKB/Swiss-Prot  Length:949

    Alignment length:107
                                   457       467       477       487       497       507       517       527       537       547       
           SUDX_DROME   448 GNQRYLYSQQQQQPTAVTAQVTQDDEDALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP 554
               SCOP domains d1tk7a1                    A:1-45                               d1tk7a2 A:46-88                             SCOP domains
               CATH domains -------------------------------------------------------------------------1tk7A02 A:55-83              ----- CATH domains
           Pfam domains (1) ---------------------------------------------------------------------------WW-1tk7A01 A:57-86            -- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------WW-1tk7A02 A:57-86            -- Pfam domains (2)
         Sec.struct. author .......-------------------...........eeee...eeeeee....eeeee........hhhhhh.......eeeee...eeeeee....eee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -----------------------------WW_DOMAIN_2  PDB: A:11-44         ----------WW_DOMAIN_2  PDB: A:55-88          PROSITE (1)
                PROSITE (2) -----------------------------------WW_DOMAIN_1  PDB: A:17-42 ------------------WW_DOMAIN_1  PDB: A:61-86 -- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1tk7 A   1 GSPEFHM-------------------DALGPLPDGWEKKIQSDNRVYFVNHKNRTTQWEDPRTQGQEVSLINEGPLPPGWEIRYTAAGERFFVDHNTRRTTFEDPRP  88
                                  |  -         -      | 11        21        31        41        51        61        71        81       
                                  7                   8                                                                                

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  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 2)

NMR Structure

(-) Gene Ontology  (20, 20)

NMR Structure(hide GO term definitions)
Chain A   (SUDX_DROME | Q9Y0H4)
molecular function
    GO:0005112    Notch binding    Interacting selectively and non-covalently with the Notch (N) protein, a surface receptor.
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0019904    protein domain specific binding    Interacting selectively and non-covalently with a specific domain of a protein.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
biological process
    GO:0007219    Notch signaling pathway    A series of molecular signals initiated by the binding of an extracellular ligand to the receptor Notch on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0016348    imaginal disc-derived leg joint morphogenesis    The process in which the anatomical structures of an imaginal disc-derived leg joint are generated and organized. The leg joint is a flexible region that separates the rigid sections of a leg to allow movement in a controlled manner. An example of this is found in Drosophila melanogaster.
    GO:0008587    imaginal disc-derived wing margin morphogenesis    The process in which the anatomical structures of the imaginal disc-derived wing margin are generated and organized. The wing margin is a strip of cells in the third instar disc at the boundary between the presumptive dorsal and ventral surfaces of the wing blade.
    GO:0008586    imaginal disc-derived wing vein morphogenesis    The process in which anatomical structures of the veins on an imaginal disc-derived wing are generated and organized.
    GO:0019915    lipid storage    The accumulation and maintenance in cells or tissues of lipids, compounds soluble in organic solvents but insoluble or sparingly soluble in aqueous solvents. Lipid reserves can be accumulated during early developmental stages for mobilization and utilization at later stages of development.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0045746    negative regulation of Notch signaling pathway    Any process that stops, prevents, or reduces the frequency, rate or extent of the Notch signaling pathway.
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
    GO:0042787    protein ubiquitination involved in ubiquitin-dependent protein catabolic process    The process in which a ubiquitin group, or multiple groups, are covalently attached to the target protein, thereby initiating the degradation of that protein.
    GO:0035209    pupal development    The process whose specific outcome is the progression of the pupa over time, from its formation to the mature structure. The pupa is a dormant life stage interposed between the larval and the adult stages in insects that undergo a complete metamorphosis.
    GO:0031623    receptor internalization    A receptor-mediated endocytosis process that results in the movement of receptors from the plasma membrane to the inside of the cell. The process begins when cell surface receptors are monoubiquitinated following ligand-induced activation. Receptors are subsequently taken up into endocytic vesicles from where they are either targeted to the lysosome or vacuole for degradation or recycled back to the plasma membrane.
    GO:0032880    regulation of protein localization    Any process that modulates the frequency, rate or extent of any process in which a protein is transported to, or maintained in, a specific location.
    GO:0048190    wing disc dorsal/ventral pattern formation    The establishment, maintenance and elaboration of the dorsal/ventral axis of the wing disc, a precursor to the adult wing.
cellular component
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        SUDX_DROME | Q9Y0H42jmf

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