1TE5 - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Title :   THE 2.0 ANGSTROM CRYSTAL STRUCTURE OF PREDICTED GLUTAMINE AMIDOTRANSFERASE FROM PSEUDOMONAS AERUGINOSA PA01

Authors :   Y. Patskovsky, S. C. Almo, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)

Date :   24 May 04 (Deposition) - 08 Jun 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym./Biol. Unit : A,B

Keywords :   Glutamine Amidotransferase, Amidotransferase, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Patskovsky, S. C. Almo
Crystal Structure Of Amidophosphoribosyltransferase From Pseudomonas Aeruginosa
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMIT
	Gene	:	PA1307
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA PAO1
	Organism Taxid	:	208964
	Strain	:	PAO1
	Synonym	:	AMIDOTRANSFERASE, AMIDOPHOSPHORIBOSYLTRANSFERASE, GLUTAMINE AMIDOTRANSFERASE

		1	2
Asymmetric/Biological Unit	:	A	B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1TE5)

(no "Site" information available for 1TE5)

(no "SS Bond" information available for 1TE5)

Asymmetric/Biological Unit

No.	Residues
1	His A:93	-	Pro A:94
2	Ala A:196	-	Pro A:197
3	His B:93	-	Pro B:94
4	Ala B:196	-	Pro B:197

(no "SAP(SNP)/Variant" information available for 1TE5)

(no "PROSITE Motif" information available for 1TE5)

(no "Exon" information available for 1TE5)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:253
 aligned with Q9I437_PSEAE | Q9I437 from UniProtKB/TrEMBL  Length:257

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q9I437_PSEAE     2 CELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQSGEWVLWWGGEVLAK 254
               SCOP domains d1te5a_ A: Hypothetical protein YafJ (PA1307)                                                                                                                                                                                                                 SCOP domains
               CATH domains 1te5A00 A:3-255 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                                    CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeeeeee.eeee...............eeeeeeee..eeeeeee......hhhhhhhhhh..eeeeeeeeeee......hhhhh..eeeee..eeeeeeee..................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh....eeeee....eeee....eeeeeee.....eeee...eeeee........eeeeee..........eee....eeeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1te5 A   3 CELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQSGEWVLWWGGEVLAK 255
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Chain B from PDB  Type:PROTEIN  Length:253
 aligned with Q9I437_PSEAE | Q9I437 from UniProtKB/TrEMBL  Length:257

    Alignment length:253
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251   
         Q9I437_PSEAE     2 CELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQSGEWVLWWGGEVLAK 254
               SCOP domains d1te5b_ B: Hypothetical protein YafJ (PA1307)                                                                                                                                                                                                                 SCOP domains
               CATH domains 1te5B00 B:3-255 Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1                                                                                                                                                                                    CATH domains
           Pfam domains (1) ------------------------------------------------------------GATase_2-1te5B01 B:63-216                                                                                                                                 --------------------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------------------------------------------GATase_2-1te5B02 B:63-216                                                                                                                                 --------------------------------------- Pfam domains (2)
         Sec.struct. author ..eeeeeeeeeeeeeeee.................eeeeee..eeeeee..............eeeeeeeeeeeee....hhhhhhhhhh..eeee....eeeeeee..................hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhh.....eeeee...eeeee....eeeeeee.....eeee....eeee........eeeeee..........eee....eeeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1te5 B   3 CELLGMSANVPTDIVFSFTGLMQRGGGTGPHRDGWGIAFYEGRGVRLFQDPLASVDSEVARLVQRFPIKSETVIGHIRQANVGKVGLSNTHPFIRELGGRYWTFAHNGQLADFQPKPGFYRPVGETDSEAAFCDLLNRVRRAFPEPVPVEVLLPVLISACDEYRKKGVFNALISDGDWLFTFCSSKLAYITRRAPFGPARLKDADLTVDFHAETTPDDVVTVIATEPLTDNENWTLQQSGEWVLWWGGEVLAK 255
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ntn hydrolase-like (356)

Superfamily: N-terminal nucleophile aminohydrolases (Ntn hydrolases) (352)

Family: Class II glutamine amidotransferases (27)

Protein domain: Hypothetical protein YafJ (PA1307) (1)

Pseudomonas aeruginosa [TaxId: 287] (1)

1a	d1te5a_	A:
1b	d1te5b_	B:

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 4-Layer Sandwich (459)

Topology: Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 (128)

Homologous Superfamily: Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 (124)

Pseudomonas aeruginosa pao1. Organism_taxid: 208964. Strain: pao1. (1)

1a	1te5A00	A:3-255
1b	1te5B00	B:3-255

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NTN (93)

Family: GATase_2 (9)

Pseudomonas aeruginosa (1)

1a	GATase_2-1te5B01	B:63-216
1b	GATase_2-1te5B02	B:63-216

Asymmetric/Biological Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1TE5)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Ala A:196 - Pro A:197	[ RasMol ]
		Ala B:196 - Pro B:197	[ RasMol ]
		His A:93 - Pro A:94	[ RasMol ]
		His B:93 - Pro B:94	[ RasMol ]

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Ligands, Modified Residues, Ions (0, 0)

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Cis Peptide Bonds (4, 4)

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