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(-) Description

Title :  CRYSTAL STRUCTURE OF METHYLMALONATE SEMIALDEHYDE DEHYDROGENASE FROM BACILLUS SUBTILIS
 
Authors :  H. Dubourg, C. Didierjean, C. Stines-Chaumeil, F. Talfournier, G. Branlant, A. Aubry, C. Corbier
Date :  14 May 04  (Deposition) - 03 Jan 06  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Oxidoreductase, Nad (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  H. Dubourg, C. Didierjean, C. Stines-Chaumeil, F. Talfournier, G. Branlant, A. Aubry, C. Corbier
Crystal Structure Analysis Of Methylmalonate-Semialdehyde Dehydrogenase From Bacillus Subtilis.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROBABLE METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE
    Chains: A, B, C, D
    EC Number: 1.2.1.27
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PSKMSDBSUB
    Expression System Strain: DH5A
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: MMSA, IOLA, E83A, BSU39760
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423
    Synonym: MMSDH

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:149 , ALA A:150 , PRO A:151 , PHE A:152 , ASN A:153 , TRP A:161 , LYS A:176 , GLU A:179 , ARG A:180 , HIS A:209 , VAL A:212 , PHE A:226 , VAL A:227 , GLY A:228 , SER A:229 , VAL A:232 , LEU A:250 , THR A:251 , GLY A:252 , CYS A:284 , GLU A:382 , PHE A:384 , ASN A:410 , PHE A:449 , HOH A:1504 , HOH A:1617 , HOH A:1661 , HOH A:1692BINDING SITE FOR RESIDUE NAD A 1490
2AC2SOFTWAREILE B:149 , ALA B:150 , PRO B:151 , PHE B:152 , ASN B:153 , TRP B:161 , LYS B:176 , GLU B:179 , ARG B:180 , HIS B:209 , VAL B:212 , PHE B:226 , VAL B:227 , GLY B:228 , SER B:229 , VAL B:232 , LEU B:250 , THR B:251 , GLY B:252 , CYS B:284 , GLU B:382 , PHE B:384 , ASN B:410 , PHE B:449 , HOH B:2514 , HOH B:2703 , HOH B:2719BINDING SITE FOR RESIDUE NAD B 2490
3AC3SOFTWAREILE C:149 , ALA C:150 , PRO C:151 , PHE C:152 , ASN C:153 , TRP C:161 , LYS C:176 , GLU C:179 , HIS C:209 , VAL C:212 , PHE C:226 , VAL C:227 , GLY C:228 , SER C:229 , VAL C:232 , LEU C:250 , THR C:251 , GLY C:252 , CYS C:284 , GLU C:382 , PHE C:384 , ASN C:410 , PHE C:449 , HOH C:3498 , HOH C:3572 , HOH C:3701BINDING SITE FOR RESIDUE NAD C 3490
4AC4SOFTWAREILE D:149 , ALA D:150 , PRO D:151 , PHE D:152 , ASN D:153 , TRP D:161 , LYS D:176 , GLU D:179 , ARG D:180 , HIS D:209 , VAL D:212 , PHE D:226 , VAL D:227 , GLY D:228 , SER D:229 , VAL D:232 , LEU D:250 , THR D:251 , GLY D:252 , CYS D:284 , GLU D:382 , PHE D:384 , ASN D:410 , PHE D:449 , HOH D:4497 , HOH D:4514 , HOH D:4594BINDING SITE FOR RESIDUE NAD D 4490

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T90)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1T90)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T90)

(-) PROSITE Motifs  (1, 4)

Asymmetric/Biological Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ALDEHYDE_DEHYDR_CYSPS00070 Aldehyde dehydrogenases cysteine active site.IOLA_BACSU277-288
 
 
 		  4A:277-288
B:277-288
C:277-288
D:277-288

(-) Exons   (0, 0)

(no "Exon" information available for 1T90)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:484
 aligned with IOLA_BACSU | P42412 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:484
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    
           IOLA_BACSU     3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
               SCOP domains d1t90a_ A: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1t90A01 A:3-251,A:451-481 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                      1t90A02 A:252-450 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                            1t90A01 A:3-251,A:451-481      ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee..eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhh..eeee...............eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhhh.ee.eeeee..hhhhhhhhhhhh...eeee...............ee..ee.....hhhhhhhhheeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t90 A   3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    


Chain B from PDB  Type:PROTEIN  Length:484
 aligned with IOLA_BACSU | P42412 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:484
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    
           IOLA_BACSU     3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
               SCOP domains d1t90b_ B: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1t90B01 B:3-251,B:451-481 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                      1t90B02 B:252-450 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                            1t90B01 B:3-251,B:451-481      ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee..eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeee..hhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhh.eeee...............eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhhh.ee.eeeee..hhhhhhhhhhhh...eeee...............ee..ee.....hhhhhhhhheeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t90 B   3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    


Chain C from PDB  Type:PROTEIN  Length:484
 aligned with IOLA_BACSU | P42412 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:484
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    
           IOLA_BACSU     3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
               SCOP domains d1t90c_ C: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1t90C01 C:3-251,C:451-481 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                      1t90C02 C:252-450 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                            1t90C01 C:3-251,C:451-481      ----- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeee..eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee...............eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhhh.ee.eeeee..hhhhhhhhhhhh...eeee...............ee..ee.....hhhhhhhhheeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t90 C   3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    


Chain D from PDB  Type:PROTEIN  Length:484
 aligned with IOLA_BACSU | P42412 from UniProtKB/Swiss-Prot  Length:487

    Alignment length:484
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482    
           IOLA_BACSU     3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
               SCOP domains d1t90d_ D: automated matches                                                                                                                                                                                                                                                                                                                                                                                                                                                                         SCOP domains
               CATH domains 1t90D01 D:3-251,D:451-481 Aldehyde Dehydrogenase; Chain A, domain 1                                                                                                                                                                                      1t90D02 D:252-450 Aldehyde Dehydrogenase; Chain A, domain 2                                                                                                                                            1t90D01 D:3-251,D:451-481      ----- CATH domains
           Pfam domains (1) ------------Aldedh-1t90D01 D:15-477                                                                                                                                                                                                                                                                                                                                                                                                                                                        --------- Pfam domains (1)
           Pfam domains (2) ------------Aldedh-1t90D02 D:15-477                                                                                                                                                                                                                                                                                                                                                                                                                                                        --------- Pfam domains (2)
           Pfam domains (3) ------------Aldedh-1t90D03 D:15-477                                                                                                                                                                                                                                                                                                                                                                                                                                                        --------- Pfam domains (3)
           Pfam domains (4) ------------Aldedh-1t90D04 D:15-477                                                                                                                                                                                                                                                                                                                                                                                                                                                        --------- Pfam domains (4)
         Sec.struct. author ......ee....ee......eeeee......eeeeee..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhheeeeeeee..eeeeeeeee..eeeee......hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhh......eee...hhhhhhhhhhh..eeeeeee.hhhhhhhhhhhhhhh..eeeee....eeeee....hhhhhhhhhhhhhhhhhhh....eeeeeeehhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhh..eeee...............eeee.....hhhhhh.....eeeeeee.hhhhhhhhhhhh.ee.eeeee..hhhhhhhhhhhh...eeee...............ee..ee.....hhhhhhhhheeeeeeeee...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALDEHYDE_DEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t90 D   3 EIRKLKNYINGEWVESKTDQYEDVVNPATKEVLCQVPISTKEDIDYAAQTAAEAFKTWSKVAVPRRARILFNFQQLLSQHKEELAHLITIENGKNTKEALGEVGRGIENVEFAAGAPSLMMGDSLASIATDVEAANYRYPIGVVGGIAPFNFPMMVPCWMFPMAIALGNTFILKPSERTPLLTEKLVELFEKAGLPKGVFNVVYGAHDVVNGILEHPEIKAISFVGSKPVGEYVYKKGSENLKRVQSLTGAKNHTIVLNDANLEDTVTNIVGAAFGSAGERCMACAVVTVEEGIADEFMAKLQEKVADIKIGNGLDDGVFLGPVIREDNKKRTLSYIEKGLEEGARLVCDGRENVSDDGYFVGPTIFDNVTTEMTIWKDEIFAPVLSVIRVKNLKEAIEIANKSEFANGACLFTSNSNAIRYFRENIDAGMLGINLGVPAPMAFFPFSGWKSSFFGTLHANGKDSVDFYTRKKVVTARYPAPDF 486
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       472       482
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (2, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 4)

Asymmetric/Biological Unit
(-)
Clan: ALDH-like (49)
(-)
Family: Aldedh (45)
(-)
Bacillus subtilis (1)
1aAldedh-1t90D01D:15-477
1bAldedh-1t90D02D:15-477
1cAldedh-1t90D03D:15-477
1dAldedh-1t90D04D:15-477

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D   (IOLA_BACSU | P42412)
molecular function
    GO:0004029    aldehyde dehydrogenase (NAD) activity    Catalysis of the reaction: an aldehyde + NAD+ + H2O = an acid + NADH + H+.
    GO:0018478    malonate-semialdehyde dehydrogenase (acetylating) activity    Catalysis of the reaction: 3-oxopropanoate + CoA + NADP+ = acetyl-CoA + CO2 + NADPH + H+.
    GO:0004491    methylmalonate-semialdehyde dehydrogenase (acylating) activity    Catalysis of the reaction: 2-methyl-3-oxopropanoate + CoA + NAD+ = propanoyl-CoA + CO2 + NADH + H+.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016620    oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which an aldehyde or ketone (oxo) group acts as a hydrogen or electron donor and reduces NAD or NADP.
biological process
    GO:0019310    inositol catabolic process    The chemical reactions and pathways resulting in the breakdown of inositol, 1,2,3,4,5,6-cyclohexanehexol, a growth factor for animals and microorganisms.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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  1t90
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  IOLA_BACSU | P42412
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  1.2.1.27
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  IOLA_BACSU | P42412
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 Related Entries

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