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(-) Description

Title :  PUTATIVE PROTEIN FROM AQUIFEX AEOLICUS
 
Authors :  M. E. Cuff, M. Zhou, F. Collart, A. Joachimiak, Midwest Center For St Genomics (Mcsg)
Date :  07 May 04  (Deposition) - 03 Aug 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  1,2
Keywords :  Structural Genomics, Aquifex Aeolicus, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. E. Cuff, M. Zhou, F. Collart, A. Joachimiak
Putative Protein From Aquifex Aeolicus
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE PROTEIN
    Chains: 1, 2
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: NP_214428
    Organism Scientific: AQUIFEX AEOLICUS
    Organism Taxid: 224324
    Strain: VF5

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : 12

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric/Biological Unit (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 1T6T)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T6T)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1T6T)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T6T)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1T6T)

(-) Exons   (0, 0)

(no "Exon" information available for 1T6T)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain 1 from PDB  Type:PROTEIN  Length:108
 aligned with O67859_AQUAE | O67859 from UniProtKB/TrEMBL  Length:118

    Alignment length:108
                                    14        24        34        44        54        64        74        84        94       104        
         O67859_AQUAE     5 PRNLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDMLEGKWEKVILLFDLDTHGERINQKMKELLSSQGFLVDENFRNFLKKWNIIHIEEI 112
               SCOP domains d1t6t1_ 1: Hypothetical protein aq_2086                                                                      SCOP domains
               CATH domains 1t6t100 1:5-112  [code=3.40.1360.10, no name defined]                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhh...eeee.hhhhhhhhhh.....eee....hhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhh..eeehhhhhhhhhh...hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 1t6t 1   5 PRNLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDmLEGKWEKVILLFDLDTHGERINQKmKELLSSQGFLVDENFRNFLKKWNIIHIEEI 112
                                    14        24        34        44        54  |     64        74       |84        94       104        
                                                                               57-MSE                   82-MSE                          


Chain 2 from PDB  Type:PROTEIN  Length:110
 aligned with O67859_AQUAE | O67859 from UniProtKB/TrEMBL  Length:118

    Alignment length:110
                                    13        23        33        43        53        63        73        83        93       103       113
         O67859_AQUAE     4 EPRNLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDMLEGKWEKVILLFDLDTHGERINQKMKELLSSQGFLVDENFRNFLKKWNIIHIEEIN 113
               SCOP domains d1t6t2_ 2: Hypothetical protein aq_2086                                                                        SCOP domains
               CATH domains 1t6t200 2:4-113  [code=3.40.1360.10, no name defined]                                                          CATH domains
           Pfam domains (1) ------------------Toprim-1t6t201 2:22-99                                                        -------------- Pfam domains (1)
           Pfam domains (2) ------------------Toprim-1t6t202 2:22-99                                                        -------------- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhhhhhh...eeee.hhhhhhhhhh.....eee....hhhhhhhhhh....eeee....hhhhhhhhhhhhhhhhhh..eeehhhhhhhh.....hhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 1t6t 2   4 EPRNLSEWIKELKKASREAVILVEGKNDKKALSKFSIKNVIDLSGKRYADVVDmLEGKWEKVILLFDLDTHGERINQKmKELLSSQGFLVDENFRNFLKKWNIIHIEEIN 113
                                    13        23        33        43        53   |    63        73        83        93       103       113
                                                                                57-MSE                   82-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: Toprim-like (19)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1T6T)

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  1t6t
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 1T6T)

(-) Related Entries Specified in the PDB File

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