1T57 - JenaLib

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Title :   CRYSTAL STRUCTURE OF THE CONSERVED PROTEIN MTH1675 FROM METHANOBACTERIUM THERMOAUTOTROPHICUM

Authors :   Y. Kim, A. Joachimiak, V. Saridakis, X. Xu, C. H. Arrowsmith, D. Christe A. Edwards, Midwest Center For Structural Genomics (Mcsg)

Date :   03 May 04 (Deposition) - 03 Aug 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.30

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A,B,C  (2x)

Keywords :   Structural Genomics, Fmn, Methanobacterium Thermoautotrophicum, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, A. Joachimiak, V. Saridakis, X. Xu, C. H. Arrowsmith, D. Christendat, A. Edwards
Crystal Structure Of The Conserved Protein Mth1675 From Methanobacterium Thermoautotrophicum
To Be Published
PubMed: search

Molecule 1 - CONSERVED PROTEIN MTH1675
	Chains	:	A, B, C
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21DE3
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	O27711
	Organism Scientific	:	METHANOTHERMOBACTER THERMAUTOTROPHICUS
	Organism Taxid	:	145262

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (2x)	:	A	B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 28)

No.	Name	Count	Type	Full Name
1	FMN	3	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	MG	4	Ligand/Ion	MAGNESIUM ION
3	MSE	21	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 48)

No.	Name	Count	Type	Full Name
1	FMN	6	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	MG	-1	Ligand/Ion	MAGNESIUM ION
3	MSE	42	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (7, 7)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU B:43 , GLY B:157 , FMN B:201	BINDING SITE FOR RESIDUE MG B 301
2	AC2	SOFTWARE	VAL A:122 , PRO A:184 , ARG A:185 , PRO A:186 , ILE B:177	BINDING SITE FOR RESIDUE MG A 302
3	AC3	SOFTWARE	ILE A:177 , HOH A:362 , VAL B:122 , PRO B:184 , ARG B:185 , PRO B:186	BINDING SITE FOR RESIDUE MG B 303
4	AC4	SOFTWARE	VAL C:122 , ILE C:177 , MSE C:183 , PRO C:184 , ARG C:185 , PRO C:186	BINDING SITE FOR RESIDUE MG C 304
5	AC5	SOFTWARE	ALA A:38 , SER A:39 , VAL A:40 , SER A:41 , GLY A:42 , GLU A:43 , THR A:44 , VAL A:59 , THR A:60 , HIS A:61 , HIS A:93 , ARG A:120 , GLN A:124 , LYS A:127 , VAL A:128 , GLU A:131 , MSE A:135 , GLY A:153 , THR A:154 , ALA A:155 , TRP A:156 , GLY A:157 , HOH A:312 , GLU B:53	BINDING SITE FOR RESIDUE FMN A 200
6	AC6	SOFTWARE	ALA B:38 , SER B:39 , VAL B:40 , SER B:41 , GLY B:42 , GLU B:43 , THR B:44 , VAL B:59 , THR B:60 , HIS B:61 , HIS B:93 , ARG B:120 , GLN B:124 , LYS B:127 , MSE B:135 , GLY B:153 , THR B:154 , ALA B:155 , TRP B:156 , GLY B:157 , MG B:301	BINDING SITE FOR RESIDUE FMN B 201
7	AC7	SOFTWARE	ALA C:38 , SER C:39 , VAL C:40 , SER C:41 , GLY C:42 , GLU C:43 , THR C:44 , VAL C:59 , THR C:60 , HIS C:61 , HIS C:93 , ARG C:120 , GLN C:124 , LYS C:127 , VAL C:128 , ILE C:132 , MSE C:135 , GLY C:153 , ALA C:155 , TRP C:156 , GLY C:157	BINDING SITE FOR RESIDUE FMN C 202

(no "SS Bond" information available for 1T57)

(no "Cis Peptide Bond" information available for 1T57)

(no "SAP(SNP)/Variant" information available for 1T57)

(no "PROSITE Motif" information available for 1T57)

(no "Exon" information available for 1T57)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:186
 aligned with O27711_METTH | O27711 from UniProtKB/TrEMBL  Length:186

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
         O27711_METTH     1 MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHMNSVFDLRIHEVIAMPRP 186
               SCOP domains d1t57a_ A: Hypothetical protein MTH1675                                                                                                                                                    SCOP domains
               CATH domains -1t57A00 A:2-186 PK C-terminal domain-like                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh....eeeee..............hhhhhhhhhhh..eee.......hhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhh........eeeee.......eeeeee..hhhhhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t57 A   1 mEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEmVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEImAETLRmVSQGFKVCVEIAImAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHmNSVFDLRIHEVIAmPRP 186
                            |       10        20        30        40        50|       60        70        80        90       100       110    |  120|      130    |  140       150       160       170       180  |   
                            |                                                51-MSE                                                         115-MSE |           135-MSE                           169-MSE       183-MSE
                            1-MSE                                                                                                                 121-MSE

Chain B from PDB  Type:PROTEIN  Length:186
 aligned with O27711_METTH | O27711 from UniProtKB/TrEMBL  Length:186

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
         O27711_METTH     1 MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHMNSVFDLRIHEVIAMPRP 186
               SCOP domains d1t57b_ B: Hypothetical protein MTH1675                                                                                                                                                    SCOP domains
               CATH domains -1t57B00 B:2-186 PK C-terminal domain-like                                                                                                                                                 CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhhhhhhhhhh..eeeee...hhhhhhhhh....eeeeee...............hhhhhh.....eeee.......hhhhhhhhh...hhhhhhhhhhh..hhhhhhhhhhhhhhhhh........eeeee.......eeeeee..hhhhhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t57 B   1 mEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEmVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEImAETLRmVSQGFKVCVEIAImAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHmNSVFDLRIHEVIAmPRP 186
                            |       10        20        30        40        50|       60        70        80        90       100       110    |  120|      130    |  140       150       160       170       180  |   
                            |                                                51-MSE                                                         115-MSE |           135-MSE                           169-MSE       183-MSE
                            1-MSE                                                                                                                 121-MSE

Chain C from PDB  Type:PROTEIN  Length:186
 aligned with O27711_METTH | O27711 from UniProtKB/TrEMBL  Length:186

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
         O27711_METTH     1 MEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEMVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEIMAETLRMVSQGFKVCVEIAIMAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHMNSVFDLRIHEVIAMPRP 186
               SCOP domains d1t57c_ C: Hypothetical protein MTH1675                                                                                                                                                    SCOP domains
               CATH domains -1t57C00 C:2-186 PK C-terminal domain-like                                                                                                                                                 CATH domains
           Pfam domains (1) ---------------PK_C-1t57C01 C:16-165                                                                                                                                 --------------------- Pfam domains (1)
           Pfam domains (2) ---------------PK_C-1t57C02 C:16-165                                                                                                                                 --------------------- Pfam domains (2)
           Pfam domains (3) ---------------PK_C-1t57C03 C:16-165                                                                                                                                 --------------------- Pfam domains (3)
         Sec.struct. author .....eee...hhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhh.......ee..............hhhhhhhhhhh...........hhhhhhhhhhhh..hhhhhhhhhhh..hhhhhhhhhhhhhhhhh........eeeee.......eeeeee.....hhhhheeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1t57 C   1 mEKKICYFEEPGKENTERVLELVGERADQLGIRNFVVASVSGETALRLSEmVEGNIVSVTHHAGFREKGQLELEDEARDALLERGVNVYAGSHALSGVGRGISNRFGGVTPVEImAETLRmVSQGFKVCVEIAImAADAGLIPVDEEVIAIGGTAWGADTALVLTPAHmNSVFDLRIHEVIAmPRP 186
                            |       10        20        30        40        50|       60        70        80        90       100       110    |  120|      130    |  140       150       160       170       180  |   
                            |                                                51-MSE                                                         115-MSE |           135-MSE                           169-MSE       183-MSE
                            1-MSE                                                                                                                 121-MSE

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

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Folds(

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Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Pyruvate kinase C-terminal domain-like (59)

Superfamily: PK C-terminal domain-like (30)

Family: MTH1675-like (2)

Protein domain: Hypothetical protein MTH1675 (1)

Methanobacterium thermoautotrophicum [TaxId: 145262] (1)

1a	d1t57a_	A:
1b	d1t57b_	B:
1c	d1t57c_	C:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Pyruvate Kinase; Chain: A, domain 1 (36)

Homologous Superfamily: PK C-terminal domain-like (2)

Methanothermobacter thermautotrophicus. Organism_taxid: 145262. (1)

1a	1t57A00	A:2-186
1b	1t57B00	B:2-186
1c	1t57C00	C:2-186

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: PK_C] (19)

Family: PK_C (19)

Methanobacterium thermoautotrophicum (strain Delta H) (1)

1a	PK_C-1t57C01	C:16-165
1b	PK_C-1t57C02	C:16-165
1c	PK_C-1t57C03	C:16-165

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (O27711_METTH | O27711)

molecular function
	GO:0046872		metal ion binding		Interacting selectively and non-covalently with any metal ion.
	GO:0000166		nucleotide binding		Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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Description

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Chains, Units

Ligands, Modified Residues, Ions (3, 28)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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