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(-) Description

Title :  CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN YVDD- A PUTATIVE LYSINE DECARBOXYLASE
 
Authors :  K. R. Rajashankar, R. Kniewel, V. Solorzano, C. D. Lima, S. K. Burley, New York Sgx Research Center For Structural Genomics (Nysgxrc)
Date :  23 Apr 04  (Deposition) - 04 May 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.72
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H
Keywords :  Hypothetical Protein Yvdd, Putative Lysine Decarboxylase, Structural Genomics Target, T833, Nysgxrc, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. R. Rajashankar, R. Kniewel, V. Solorzano, C. D. Lima
Crystal Structure Of A Hypothetical Protein Yvdd - Putative Lysine Decarboxylase
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YVDD, PUTATIVE LYSINE DECARBOXYLASE
    Chains: A, B, C, D, E, F, G, H
    EC Number: 4.1.1.18
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET T7
    Expression System Strain: B834 DE3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Organism Scientific: BACILLUS SUBTILIS
    Organism Taxid: 1423

 Structural Features

(-) Chains, Units

  12345678
Asymmetric/Biological Unit : ABCDEFGH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 110)

Asymmetric/Biological Unit (2, 110)
No.NameCountTypeFull Name
1MSE96Mod. Amino AcidSELENOMETHIONINE
2SO414Ligand/IonSULFATE ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:9 , SER A:10 , GLY A:106 , GLY A:107 , PHE A:108 , GLY A:109 , THR A:110 , GLY E:71 , HIS E:75BINDING SITE FOR RESIDUE SO4 A 192
02AC2SOFTWAREGLY B:9 , SER B:10 , GLY B:107 , GLY B:109 , THR B:110 , HOH C:193BINDING SITE FOR RESIDUE SO4 B 192
03AC3SOFTWAREALA C:8 , GLY C:9 , SER C:10 , GLY C:107 , PHE C:108 , GLY C:109 , THR C:110 , HOH D:195BINDING SITE FOR RESIDUE SO4 C 192
04AC4SOFTWAREGLY D:9 , SER D:10 , GLY D:106 , GLY D:107 , PHE D:108 , GLY D:109 , THR D:110 , GLY G:71 , HIS G:75BINDING SITE FOR RESIDUE SO4 D 192
05AC5SOFTWAREGLY F:9 , SER F:10 , GLY F:107 , GLY F:109 , THR F:110 , HOH F:195BINDING SITE FOR RESIDUE SO4 F 192
06AC6SOFTWAREGLY A:71 , VAL A:74 , HIS A:75 , GLY E:9 , SER E:10 , GLY E:107 , PHE E:108 , GLY E:109 , THR E:110BINDING SITE FOR RESIDUE SO4 E 192
07AC7SOFTWAREGLY D:71 , VAL D:74 , HIS D:75 , GLY G:9 , SER G:10 , GLY G:106 , GLY G:107 , GLY G:109 , THR G:110BINDING SITE FOR RESIDUE SO4 G 192
08AC8SOFTWAREGLY H:9 , SER H:10 , GLY H:107 , PHE H:108 , GLY H:109 , THR H:110BINDING SITE FOR RESIDUE SO4 H 192
09AC9SOFTWAREGLY E:86 , MSE E:87 , HIS E:88 , HIS F:88BINDING SITE FOR RESIDUE SO4 E 193
10BC1SOFTWAREPRO A:65 , SER A:66 , GLY A:67 , VAL A:84 , GLY A:86 , PRO E:65 , SER E:66 , GLY E:67 , VAL E:84 , ASN E:85 , GLY E:86BINDING SITE FOR RESIDUE SO4 E 194
11BC2SOFTWAREGLY A:86 , MSE A:87 , HIS A:88 , HIS B:88BINDING SITE FOR RESIDUE SO4 A 193
12BC3SOFTWAREHIS C:88 , GLY D:86 , MSE D:87 , HIS D:88BINDING SITE FOR RESIDUE SO4 D 193
13BC4SOFTWAREPRO D:65 , SER D:66 , GLY D:67 , VAL D:84 , GLY D:86 , PRO G:65 , SER G:66 , GLY G:67 , VAL G:84 , GLY G:86BINDING SITE FOR RESIDUE SO4 D 194
14BC5SOFTWAREGLY G:86 , MSE G:87 , HIS G:88 , HIS H:88BINDING SITE FOR RESIDUE SO4 G 193

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1T35)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1T35)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1T35)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1T35)

(-) Exons   (0, 0)

(no "Exon" information available for 1T35)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:179
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
               SCOP domains d1t35a_ A: Hypothetical protein YvdD                                                                                                                                                SCOP domains
               CATH domains -1t35A00 A:2-179  [code=3.40.50.450, no name defined]                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee........hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh....eeeeee...hhhhhh.....eeeeehhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhh.........eeee.hhhhhhhhhhhhhhhhhh.....hhhhheeee.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 A   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNY 179
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     |   
                            |                          29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE
                            1-MSE                                                                                                                                       143-MSE                                
                                                                                                                                                                          145-MSE                              


Chain B from PDB  Type:PROTEIN  Length:179
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
               SCOP domains d1t35b_ B: Hypothetical protein YvdD                                                                                                                                                SCOP domains
               CATH domains -1t35B00 B:2-179  [code=3.40.50.450, no name defined]                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhhh...eeeeee....hhhhhh....eeeeehhhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh........eeee.hhhhhhhhhhhhhhhhhh...hhhhhh.eeee.hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 B   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNY 179
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     |   
                            |                          29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE
                            1-MSE                                                                                                                                       143-MSE                                
                                                                                                                                                                          145-MSE                              


Chain C from PDB  Type:PROTEIN  Length:179
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
               SCOP domains d1t35c_ C: Hypothetical protein YvdD                                                                                                                                                SCOP domains
               CATH domains -1t35C00 C:2-179  [code=3.40.50.450, no name defined]                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh....eeeeee...hhhhh......eeeee.hhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhh.........eee.hhhhhhhhhhhhhhhhhh.......hhhhh....hhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 C   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNY 179
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     |   
                            |                          29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE
                            1-MSE                                                                                                                                       143-MSE                                
                                                                                                                                                                          145-MSE                              


Chain D from PDB  Type:PROTEIN  Length:179
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
               SCOP domains d1t35d_ D: Hypothetical protein YvdD                                                                                                                                                SCOP domains
               CATH domains -1t35D00 D:2-179  [code=3.40.50.450, no name defined]                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee........hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh....eeeeee...hhhhh......eeeeehhhhhhhhhhhh....eee...hhhhhhhhhhhhhhh........eee......hhhhhhhhhhhhhhh...hhhhhh.....hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 D   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNY 179
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     |   
                            |                          29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE
                            1-MSE                                                                                                                                       143-MSE                                
                                                                                                                                                                          145-MSE                              


Chain E from PDB  Type:PROTEIN  Length:184
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNYSYPIL 184
               SCOP domains d1t35e_ E: Hypothetical protein YvdD                                                                                                                                                     SCOP domains
               CATH domains -1t35E00 E:2-184  [code=3.40.50.450, no name defined]                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee........hhhhhhhhhhhhhhhhh..eeee....hhhhhhhhhhhhh....eeeeee..............eeeeehhhhhhhhhhhhhh.eeee...hhhhhhhhhhhhhhh........eeee.....hhhhhhhhhhhhhh...hhhhhh.eeee.hhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 E   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNYSYPIL 184
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     | 180    
                            |                          29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE    
                            1-MSE                                                                                                                                       143-MSE                                     
                                                                                                                                                                          145-MSE                                   


Chain F from PDB  Type:PROTEIN  Length:184
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:184
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180    
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNYSYPIL 184
               SCOP domains d1t35f_ F: Hypothetical protein YvdD                                                                                                                                                     SCOP domains
               CATH domains -1t35F00 F:2-184  [code=3.40.50.450, no name defined]                                                                                                                                    CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee........hhhhhhhhhhhhhhhh...eeee.....hhhhhhhhhhhh....eeeeee...hhhhh......eeeee.hhhhhhhhhhhh..eeee...hhhhhhhhhhhhhhh........eee.hhhhhhhhhhhhhhhhhhh...hhhhhh.eee..hhhhhhhhhh....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 F   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNYSYPIL 184
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     | 180    
                            1-MSE                      29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE    
                                                                                                                                                                        143-MSE                                     
                                                                                                                                                                          145-MSE                                   


Chain G from PDB  Type:PROTEIN  Length:179
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
               SCOP domains d1t35g_ G: Hypothetical protein YvdD                                                                                                                                                SCOP domains
               CATH domains -1t35G00 G:2-179  [code=3.40.50.450, no name defined]                                                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhh..eeee.....hhhhhhhhhhhh....eeeeee...hhhhh......eeeee..hhhhhhhhhhhh.eeee...hhhhhhhhhhhhhh.........eeee.....hhhhhhhhhhhhhh...hhhhhh.eeee.hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 G   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNY 179
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     |   
                            1-MSE                      29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE
                                                                                                                                                                        143-MSE                                
                                                                                                                                                                          145-MSE                              


Chain H from PDB  Type:PROTEIN  Length:179
 aligned with YVDD_BACSU | O06986 from UniProtKB/Swiss-Prot  Length:191

    Alignment length:179
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170         
           YVDD_BACSU     1 MKTICVFAGSNPGGNEAYKRKAAELGVYMAEQGIGLVYGGSRVGLMGTIADAIMENGGTAIGVMPSGLFSGEVVHQNLTELIEVNGMHERKAKMSELADGFISMPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPMMKMVKYSIQEGFSNESHLKLIHSSSRPDELIEQMQNY 179
               SCOP domains d1t35h_ H: Hypothetical protein YvdD                                                                                                                                                SCOP domains
               CATH domains -1t35H00 H:2-179  [code=3.40.50.450, no name defined]                                                                                                                               CATH domains
           Pfam domains (1) ---------------------------------------------Lysine_decarbox-1t35H01 H:46-176                                                                                                   --- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------Lysine_decarbox-1t35H02 H:46-176                                                                                                   --- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------Lysine_decarbox-1t35H03 H:46-176                                                                                                   --- Pfam domains (3)
           Pfam domains (4) ---------------------------------------------Lysine_decarbox-1t35H04 H:46-176                                                                                                   --- Pfam domains (4)
           Pfam domains (5) ---------------------------------------------Lysine_decarbox-1t35H05 H:46-176                                                                                                   --- Pfam domains (5)
           Pfam domains (6) ---------------------------------------------Lysine_decarbox-1t35H06 H:46-176                                                                                                   --- Pfam domains (6)
           Pfam domains (7) ---------------------------------------------Lysine_decarbox-1t35H07 H:46-176                                                                                                   --- Pfam domains (7)
           Pfam domains (8) ---------------------------------------------Lysine_decarbox-1t35H08 H:46-176                                                                                                   --- Pfam domains (8)
         Sec.struct. author ..eeeee.......hhhhhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhh....eeeeee...hhhhhhhhh..eeeee.hhhhhhhhhhhhh.eeee...hhhhhhhhhhhhh..........eeee.hhhhhhhhhhhhhhhhh....hhhhh..eeee.hhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1t35 H   1 mKTICVFAGSNPGGNEAYKRKAAELGVYmAEQGIGLVYGGSRVGLmGTIADAImENGGTAIGVmPSGLFSGEVVHQNLTELIEVNGmHERKAKmSELADGFISmPGGFGTYEELFEVLCWAQIGIHQKPIGLYNVNGYFEPmmKmVKYSIQEGFSNESHLKLIHSSSRPDELIEQmQNY 179
                            |       10        20        30        40     |  50   |    60   |    70        80      | 90   |   100   |   110       120       130       140 || |  150       160       170     |   
                            |                          29-MSE           46-MSE  54-MSE    64-MSE                 87-MSE 94-MSE   104-MSE                               142-MSE                           176-MSE
                            1-MSE                                                                                                                                       143-MSE                                
                                                                                                                                                                          145-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 8)

Asymmetric/Biological Unit
(-)
Clan: DprA (10)

(-) Gene Ontology  (3, 3)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (YVDD_BACSU | O06986)
molecular function
    GO:0016799    hydrolase activity, hydrolyzing N-glycosyl compounds    Catalysis of the hydrolysis of any N-glycosyl bond.
biological process
    GO:0009691    cytokinin biosynthetic process    The chemical reactions and pathways resulting in the formation of cytokinins, a class of adenine-derived compounds that can function in plants as growth regulators.
cellular component
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

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