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(-) Description

Title :  NMR SOLUTION STRUCTURE OF THE U BOX DOMAIN FROM ATPUB14, AN ARMADILLO REPEAT CONTAINING PROTEIN FROM ARABIDOPSIS THALIANA
 
Authors :  P. Andersen, B. B. Kragelund, A. N. Olsen, F. H. Larsen, N. -H. Chua, F. M. Poulsen, K. Skriver
Date :  16 Apr 04  (Deposition) - 03 Aug 04  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Ubiquitin Ligase, E3 Ligase, Arabidopsis, U-Box, Nmr (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Andersen, B. B. Kragelund, A. N. Olsen, F. H. Larsen, N. -H. Chua, F. M. Poulsen, K. Skriver
Structure And Biochemical Function Of A Prototypical Arabidopsis U-Box Domain
J. Biol. Chem. V. 279 40053 2004
PubMed-ID: 15231834  |  Reference-DOI: 10.1074/JBC.M405057200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ARMADILLO REPEAT CONTAINING PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PGEX-4T-1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: U-BOX DOMAIN (249-321)
    Organism Common: THALE CRESS
    Organism Scientific: ARABIDOPSIS THALIANA
    Organism Taxid: 3702
    Synonym: GSPEF-ATPUB14

 Structural Features

(-) Chains, Units

  
NMR Structure (20x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1T1H)

(-) Sites  (0, 0)

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(-) SS Bonds  (0, 0)

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(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1U_BOXPS51698 U-box domain profile.PUB14_ARATH247-321  1A:249-321

(-) Exons   (0, 0)

(no "Exon" information available for 1T1H)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:78
 aligned with PUB14_ARATH | Q8VZ40 from UniProtKB/Swiss-Prot  Length:632

    Alignment length:86
                                   245       255       265       275       285       295       305       315      
          PUB14_ARATH   236 GSRIVSRHRSPVIPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 321
               SCOP domains d1        t1ha_ A: E3 ubiquitin ligase PUB14                                           SCOP domains
               CATH domains 1t        1hA00 A:244-321 Zinc/RING finger domain, C3HC4 (zinc finger)                 CATH domains
               Pfam domains -------------U-box-1t1hA01 A:249-320                                                 - Pfam domains
         Sec.struct. author ..--------..................eeee...eeeehhhhhhhhh..................ee...hhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------U_BOX  PDB: A:249-321 UniProt: 247-321                                      PROSITE
                 Transcript -------------------------------------------------------------------------------------- Transcript
                 1t1h A 244 GS--------PEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNGIE 321
                             |       -|      255       265       275       285       295       305       315      
                             |      246                                                                           
                           245
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: RING (39)

(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (PUB14_ARATH | Q8VZ40)
molecular function
    GO:0016874    ligase activity    Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0070696    transmembrane receptor protein serine/threonine kinase binding    Interacting selectively and non-covalently with a receptor that spans a cell membrane and possesses protein serine/threonine kinase activity.
    GO:0004842    ubiquitin-protein transferase activity    Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
biological process
    GO:0016567    protein ubiquitination    The process in which one or more ubiquitin groups are added to a protein.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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(-) Related Entries Specified in the PDB File

1n87 SOLUTION STRUCTURE OF A U BOX DOMAIN FROM THE YEAST PROTEIN PRP19P