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(-) Description

Title :  NMR STUDY OF THE PROLINE REPEAT FROM TUS
 
Authors :  D. J. Butcher, M. L. Nedved, T. G. Neiss, G. R. Moe
Date :  29 Nov 95  (Deposition) - 03 Apr 96  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (10x)
Keywords :  Dna-Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Butcher, M. L. Nedved, T. G. Neiss, G. R. Moe
Proline Pipe Helix: Structure Of The Tus Proline Repeat Determined By 1H Nmr.
Biochemistry V. 35 698 1996
PubMed-ID: 8547250  |  Reference-DOI: 10.1021/BI952419L
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - TUS PROLINE REPEAT
    Chains: A
    Engineered: YES
    Fragment: TUS PROLINE REPEAT DOMAIN, RESIDUES 223 - 244

 Structural Features

(-) Chains, Units

  
NMR Structure (10x): 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1SUT)

(-) Sites  (0, 0)

(no "Site" information available for 1SUT)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SUT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SUT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SUT)

(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

(no "Exon" information available for 1SUT)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:22
 aligned with TUS_ECOLI | P16525 from UniProtKB/Swiss-Prot  Length:309

    Alignment length:22
                                   232       242  
            TUS_ECOLI   223 PQNAKLKIKRPVKVQPIARVWY 244
               SCOP domains d1suta_ A:             SCOP domains
               CATH domains ---------------------- CATH domains
               Pfam domains Ter-1sutA01 A:1-19 --- Pfam domains
         Sec.struct. author ...................... Sec.struct. author
                 SAPs(SNPs) ---------------------- SAPs(SNPs)
                    PROSITE ---------------------- PROSITE
                 Transcript ---------------------- Transcript
                 1sut A   1 PQNAKLKIKRPVKVQPIARRVY  22
                                    10        20
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: Peptides (792)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SUT)

(-) Pfam Domains  (1, 1)

NMR Structure
(-)
Clan: no clan defined [family: Ter] (1)

(-) Gene Ontology  (6, 6)

NMR Structure(hide GO term definitions)
Chain A   (TUS_ECOLI | P16525)
molecular function
    GO:0003677    DNA binding    Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
    GO:0043565    sequence-specific DNA binding    Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
biological process
    GO:0006260    DNA replication    The cellular metabolic process in which a cell duplicates one or more molecules of DNA. DNA replication begins when specific sequences, known as origins of replication, are recognized and bound by initiation proteins, and ends when the original DNA molecule has been completely duplicated and the copies topologically separated. The unit of replication usually corresponds to the genome of the cell, an organelle, or a virus. The template for replication can either be an existing DNA molecule or RNA.
    GO:0006274    DNA replication termination    The process in which DNA replication at a replication fork ceases; occurs when the replication fork reaches a specific termination site or when two replication forks meet.
    GO:0071807    replication fork arrest involved in DNA replication termination    A replication fork arrest process that contributes to the termination of DNA replication.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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  1sut
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  TUS_ECOLI | P16525
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        TUS_ECOLI | P16525: 1ecr 2ewj 2i05 2i06 4xr0 4xr1 4xr2 4xr3

(-) Related Entries Specified in the PDB File

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