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(-) Description

Title :  SATELLITE PANICUM MOSAIC VIRUS
 
Authors :  N. Ban, A. Mcpherson
Date :  12 Jul 95  (Deposition) - 27 Jan 97  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,D,E
Biol. Unit 1:  A,B,C,D,E  (12x)
Keywords :  Virus, Icosahedral Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Ban, A. Mcpherson
The Structure Of Satellite Panicum Mosaic Virus At 1. 9 A Resolution.
Nat. Struct. Biol. V. 2 882 1995
PubMed-ID: 7552713  |  Reference-DOI: 10.1038/NSB1095-882
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SATELLITE PANICUM MOSAIC VIRUS
    Chains: A, B, C, D, E
    Organism Scientific: PANICUM MOSAIC SATELLITE VIRUS
    Organism Taxid: 154834
    Synonym: SPMV

 Structural Features

(-) Chains, Units

  12345
Asymmetric Unit : ABCDE
Biological Unit 1 (12x): ABCDE

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1STM)

(-) Sites  (0, 0)

(no "Site" information available for 1STM)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1STM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1STM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1STM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1STM)

(-) Exons   (0, 0)

(no "Exon" information available for 1STM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:141
 aligned with COAT_SPMV | Q86993 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:141
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 
            COAT_SPMV    17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
               SCOP domains d1stma_ A: SPMV coat protein                                                                                                                  SCOP domains
               CATH domains 1stmA00 A:17-157  [code=2.60.120.220, no name defined]                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee......eeeeehhh.hhhhh.....eeeeeeeeeeee...eeeeeee..............eee....eeeee..................eeeeeeee..........eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1stm A  17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 


Chain B from PDB  Type:PROTEIN  Length:141
 aligned with COAT_SPMV | Q86993 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:141
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 
            COAT_SPMV    17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
               SCOP domains d1stmb_ B: SPMV coat protein                                                                                                                  SCOP domains
               CATH domains 1stmB00 B:17-157  [code=2.60.120.220, no name defined]                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee......eeeeehhh.hhhhh.....eeeeeeeeeeee...eeeeeee..............eee....eeeee..................eeeeeeee..........eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1stm B  17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 


Chain C from PDB  Type:PROTEIN  Length:141
 aligned with COAT_SPMV | Q86993 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:141
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 
            COAT_SPMV    17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
               SCOP domains d1stmc_ C: SPMV coat protein                                                                                                                  SCOP domains
               CATH domains 1stmC00 C:17-157  [code=2.60.120.220, no name defined]                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee......eeeeehhh.hhhhh.....eeeeeeeeeeee...eeeeeee..............eee....eeeee..................eeeeeeee..........eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1stm C  17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 


Chain D from PDB  Type:PROTEIN  Length:141
 aligned with COAT_SPMV | Q86993 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:141
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 
            COAT_SPMV    17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
               SCOP domains d1stmd_ D: SPMV coat protein                                                                                                                  SCOP domains
               CATH domains 1stmD00 D:17-157  [code=2.60.120.220, no name defined]                                                                                        CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee......eeeeehhh.hhhhh.....eeeeeeeeeeee...eeeeeee..............eee....eeeee..................eeeeeeee..........eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1stm D  17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 


Chain E from PDB  Type:PROTEIN  Length:141
 aligned with COAT_SPMV | Q86993 from UniProtKB/Swiss-Prot  Length:157

    Alignment length:141
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156 
            COAT_SPMV    17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
               SCOP domains d1stme_ E: SPMV coat protein                                                                                                                  SCOP domains
               CATH domains 1stmE00 E:17-157  [code=2.60.120.220, no name defined]                                                                                        CATH domains
           Pfam domains (1) Potex_coat-1stmE01 E:17-157                                                                                                                   Pfam domains (1)
           Pfam domains (2) Potex_coat-1stmE02 E:17-157                                                                                                                   Pfam domains (2)
           Pfam domains (3) Potex_coat-1stmE03 E:17-157                                                                                                                   Pfam domains (3)
           Pfam domains (4) Potex_coat-1stmE04 E:17-157                                                                                                                   Pfam domains (4)
           Pfam domains (5) Potex_coat-1stmE05 E:17-157                                                                                                                   Pfam domains (5)
         Sec.struct. author ....eeeeeeeee......eeeeehhh.hhhhh.....eeeeeeeeeeee...eeeeeee..............eee....eeeee..................eeeeeeee..........eeeeeeeeeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1stm E  17 AAATSLVYDTCYVTLTERATTSFQRQSFPTLKGMGDRAFQVVAFTIQGVSAAPLMYNARLYNPGDTDSVHATGVQLMGTVPRTVRLTPRVGQNNWFFGNTEEAETILAIDGLVSTKGANAPSNTVIVTGCFRLAPSELQSS 157
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 5)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 5)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 5)

Asymmetric Unit
(-)
Clan: no clan defined [family: Potex_coat] (1)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E   (COAT_SPMV | Q86993)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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