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(-) Description

Title :  CRYSTAL STRUCTURE OF GLUCOSE DEHYDROGENASE OF CAENORHABDITIS ELEGANS IN THE APO-FORM
 
Authors :  N. Schormann, J. Zhou, D. Mccombs, T. Bray, J. Symersky, W. -Y. Huang, C. R. Gray, D. Luo, A. Arabashi, B. Bunzel, L. Nagy, S. Lu, S. Li, G. Lin, Y. Z S. Qiu, J. Tsao, M. Luo, M. Carson, Southeast Collaboratory For Str Genomics (Secsg)
Date :  17 Mar 04  (Deposition) - 23 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Parallel Beta-Sheet Of Seven Strands In The Order 3214567; Three Alpha-Helices On Either Side Of Beta-Sheet; Seventh Alpha-Helix On Top Of Beta-Sheet, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. Schormann, J. Zhou, D. Mccombs, T. Bray, J. Symersky, W. -Y. Huang, C. -H. Luan, R. Gray, D. Luo, A. Arabashi, B. Bunzel, L. Nagy, S. Lu, S. Li G. Lin, Y. Zhang, S. Qiu, J. Tsao, M. Luo, M. Carson
Crystal Structure Of Glucose Dehydrogenase Of Caenorhabditi Elegans In The Apo-Form: A Member Of The Sdr-Family
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHORT-CHAIN REDUCTASE FAMILY MEMBER (5L265)
    Chains: A
    EC Number: 1.1.1.47
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: D1054.8
    Organism Scientific: CAENORHABDITIS ELEGANS
    Organism Taxid: 6239
    Synonym: GLUCOSE DEHYDROGENASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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Chain A from PDB  Type:PROTEIN  Length:237
 aligned with Q18946_CAEEL | Q18946 from UniProtKB/TrEMBL  Length:278

    Alignment length:264
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261    
         Q18946_CAEEL     2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAGAAIPDSQSKTGTAQSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATGFGSAMGMPEETSKKFYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLI 265
               SCOP domains d1spxa_ A: Glucose dehydrogenase (5l265)                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1spxA00 A:2-265 NAD(P)-binding Rossmann-like Domain                                                                                                                                                                                                                      CATH domains
               Pfam domains ----------adh_short_C2-1spxA01 A:12-263                                                                                                                                                                                                                               -- Pfam domains
         Sec.struct. author ......eeee....hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhhh..hhh.eeeee....hhhhhhhhhhhhhhhhh...eeee...-------------.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeee............hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee......--------------hhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhh.....eeee..hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1spx A   2 TRFAEKVAIITGSSNGIGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVSEQNVNSVVADVTTDAGQDEILSTTLGKFGKLDILVNNAG-------------QSIESYDATLNLNLRSVIALTKKAVPHLSSTKGEIVNISSIASGLHATPDFPYYSIAKAAIDQYTRNTAIDLIQHGIRVNSISPGLVATG--------------FYSTMATMKECVPAGVMGQPQDIAEVIAFLADRKTSSYIIGHQLVVDGGSSLI 265
                                    11        21        31        41        51        61        71        81        91   |     -       111       121       131       141       151       161       171       181       191      |  -         - |     221       231       241       251       261    
                                                                                                                        95           109                                                                                      198            213
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric Unit
(-)
Clan: NADP_Rossmann (1239)

(-) Gene Ontology  (2, 2)

Asymmetric Unit(hide GO term definitions)
Chain A   (Q18946_CAEEL | Q18946)
molecular function
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.

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