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(-) Description

Title :  CONFORMATIONAL ENERGY STUDIES OF BETA-SHEETS OF MODEL SILK FIBROIN PEPTIDES. I. SHEETS OF POLY(ALA-GLY) CHAINS
 
Authors :  S. A. Fossey, G. Nemethy, K. D. Gibson, H. A. Scheraga
Date :  02 Oct 91  (Deposition) - 31 Jan 94  (Release) - 31 Jan 94  (Revision)
Method :  THEORETICAL MODEL
Resolution :  NOT APPLICABLE
Chains :  Theor. Model :  A,B,C,D,E,F,G,H,I,J,K,L,M,N,O
Keywords :  Fibrous Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. A. Fossey, G. Nemethy, K. D. Gibson, H. A. Scheraga
Conformational Energy Studies Of Beta-Sheets Of Model Silk Fibroin Peptides. I. Sheets Of Poly(Ala-Gly) Chains.
Biopolymers V. 31 1529 1991
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - 
    Chains: A, B, C, D, E
    Engineered: YES
 
Molecule 2 - 
    Chains: F, G, H, I, J, K, L, M, N, O
    Engineered: YES

 Structural Features

(-) Chains, Units

  
Theoretical Model : 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 30)

Theoretical Model (2, 30)
No.NameCountTypeFull Name
1ACE15Mod. Amino AcidACETYL GROUP
2NME15Mod. Amino AcidMETHYLAMINE

(-) Sites  (0, 0)

(no "Site" information available for 1SLK)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SLK)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SLK)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SLK)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SLK)

(-) Exons   (0, 0)

(no "Exon" information available for 1SLK)

(-) Sequences/Alignments

Theoretical Model
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk A 1 xAGAGAGx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain B from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk B 1 xAGAGAGx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain C from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk C 1 xAGAGAGx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain D from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk D 1 xAGAGAGx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain E from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk E 1 xAGAGAGx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain F from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk F 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain G from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk G 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain H from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk H 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain I from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk I 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain J from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk J 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain K from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk K 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain L from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk L 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain M from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk M 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain N from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk N 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE   


Chain O from PDB  Type:PROTEIN  Length:8
                                      
               SCOP domains -------- SCOP domains
               CATH domains -------- CATH domains
               Pfam domains -------- Pfam domains
         Sec.struct. author ..eeee.. Sec.struct. author
                 SAPs(SNPs) -------- SAPs(SNPs)
                    PROSITE -------- PROSITE
                 Transcript -------- Transcript
                   1slk O 1 xGAGAGAx 8
                            |      |
                            |      8-NME
                            1-ACE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 1SLK)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1SLK)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1SLK)

(-) Gene Ontology  (0, 0)

Theoretical Model(hide GO term definitions)
    (no "Gene Ontology" information available for 1SLK)

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