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(-) Description

Title :  THREE-DIMENSIONAL STRUCTURE OF A LLAMA VHH DOMAIN OE7 BINDING THE CELL WALL PROTEIN MALF1
 
Authors :  E. Dolk, M. Van Der Vaart, D. L. Hulsik, G. Vriend, H. De Haard, S. Spin C. Cambillau, L. Frenken, T. Verrips
Date :  04 Mar 04  (Deposition) - 15 Mar 05  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A
Keywords :  Camelids Antibody, Heavy Chain, Dandruff, Phage Display, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  E. Dolk, M. Van Der Vaart, D. L. Hulsik, G. Vriend, H. De Haard, S. Spinelli, C. Cambillau, L. Frenken, T. Verrips
Isolation Of Llama Antibody Fragments For Prevention Of Dandruff By Phage Display In Shampoo.
Appl. Environ. Microbiol. V. 71 442 2005
PubMed-ID: 15640220  |  Reference-DOI: 10.1128/AEM.71.1.442-450.2005

(-) Compounds

Molecule 1 - IMMUNOGLOBULIN VH DOMAIN
    Cell: LYMPHOCYTES
    Chains: A
    Engineered: YES
    Expression System: SACCHAROMYCES CEREVISIAE
    Expression System Common: BAKER'S YEAST
    Expression System Taxid: 4932
    Organism Common: LLAMA
    Organism Scientific: LAMA GLAMA
    Organism Taxid: 9844
    Other Details: PROTEIN SELECTED BY PHAGE DISPLAY

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MPD2Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:21W , HOH A:71W , ASN A:832 , MET A:834BINDING SITE FOR RESIDUE MPD A 8001
2AC2SOFTWAREMET A:834 , GLY A:835 , TYR A:837 , LYS A:858 , GLY A:904 , THR A:905 , VAL A:906BINDING SITE FOR RESIDUE MPD A 8002

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:822 -A:895

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SJX)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SJX)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SJX)

(-) Exons   (0, 0)

(no "Exon" information available for 1SJX)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:119
                                                                                                                                                       
               SCOP domains d1sjxa_ A: automated matches                                                                                            SCOP domains
               CATH domains 1sjxA00 A:801-919 Immunoglobulins                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..eeee....eeeeeeeee....eeeeeeeee......eeeeee.....eee.......eeeeeehhh.eeeeee...hhhhheeeeeeeee........ee...eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------- Transcript
                 1sjx A 801 QVQLQESGGGLVQAGGSLRLSCQASGNIFRINDMGWYRQAPGTQRELVAAITSGGSTKYADSVKGRFTISKDNAKNTVYLQMNSLKPEDTAVYYCAAEDRHRIGTVGYWGQGTQVTVSS 919
                                   810       820       830       840       850       860       870       880       890       900       910
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1SJX)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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  1sjx
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 Related Entries

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