Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym./Biol. Unit
(-)Asym./Biol. Unit - sites
collapse expand < >
Image Asym./Biol. Unit
Asym./Biol. Unit  (Jmol Viewer)
Image Asym./Biol. Unit - sites
Asym./Biol. Unit - sites  (Jmol Viewer)

(-) Description

Title :  MYCOBACTERIUM TUBERCULOSIS DUTPASE COMPLEXED WITH MAGNESIUM AND ALPHA, BETA-IMIDO-DUTP
 
Authors :  M. R. Sawaya, S. Chan, B. Segelke, T. Lekin, H. Krupka, U. S. Cho, M. -Y. Ki C. -Y. Kim, C. M. Naranjo, Y. C. Rogers, M. S. Park, G. S. Waldo, I. Pashko D. Cascio, T. O. Yeates, J. L. Perry, T. C. Terwilliger, D. Eisenberg, T Structural Genomics Consortium (Tbsgc)
Date :  04 Mar 04  (Deposition) - 09 Mar 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Jelly-Roll, Structural Genomics, Psi, Protein Structure Initiative, Tb Structural Genomics Consortium, Tbsgc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. Chan, B. Segelke, T. Lekin, H. Krupka, U. S. Cho, M. -Y. Kim, M. So, C. -Y. Kim, C. M. Naranjo, Y. C. Rogers, M. S. Park, G. S. Waldo, I. Pashkov, D. Cascio, J. L. Perry, M. R. Sawaya
Crystal Structure Of The Mycobacterium Tuberculosis Dutpase Insights Into The Catalytic Mechanism.
J. Mol. Biol. V. 341 503 2004
PubMed-ID: 15276840  |  Reference-DOI: 10.1016/J.JMB.2004.06.028

(-) Compounds

Molecule 1 - DEOXYURIDINE 5'-TRIPHOSPHATE NUCLEOTIDOHYDROLASE
    ChainsA, B, C
    EC Number3.6.1.23
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET22B
    Expression System StrainBL21-GOLD (DE3)
    Expression System Taxid562
    Expression System Vector TypePLASMID
    GeneDUT, RV2697C, MT2771, MTCY05A6.18C, MB2716C
    Organism ScientificMYCOBACTERIUM TUBERCULOSIS
    Organism Taxid1773
    SynonymDUTPASE, DUTP PYROPHOSPHATASE

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 9)

Asymmetric/Biological Unit (4, 9)
No.NameCountTypeFull Name
1DUP3Ligand/Ion2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
2MG3Ligand/IonMAGNESIUM ION
3NO32Ligand/IonNITRATE ION
4TRS1Ligand/Ion2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:1218 , HOH A:1221 , DUP B:3170 , HOH B:3212BINDING SITE FOR RESIDUE MG A 171
2AC2SOFTWAREDUP A:1170 , HOH A:1220 , HOH C:192 , HOH C:217BINDING SITE FOR RESIDUE MG C 171
3AC3SOFTWAREDUP B:2170 , HOH B:3174 , HOH B:3207 , HOH B:3239BINDING SITE FOR RESIDUE MG B 171
4AC4SOFTWAREPHE A:130 , ASP A:131 , THR B:4 , ALA B:6 , ARG C:87 , VAL C:127BINDING SITE FOR RESIDUE NO3 C 172
5AC5SOFTWAREGLY B:66 , LEU B:67 , ARG B:70 , VAL B:127 , ALA B:133 , HOH B:3210 , HOH B:3220BINDING SITE FOR RESIDUE NO3 B 172
6AC6SOFTWAREASN A:77 , GLY A:80 , THR A:81 , ILE A:82 , ASP A:83 , TYR A:86 , ILE A:90 , LYS A:91 , HOH A:1172 , HOH A:1177 , HOH A:1178 , HOH A:1186 , HOH A:1202 , HOH A:1210 , HOH A:1220 , HOH A:1226 , HOH A:1231 , ARG B:140 , ARG C:64 , SER C:65 , GLY C:66 , GLN C:113 , MG C:171 , HOH C:192 , HOH C:202 , HOH C:217BINDING SITE FOR RESIDUE DUP A 1170
7AC7SOFTWAREPRO B:63 , ARG B:64 , SER B:65 , GLY B:66 , GLN B:113 , MG B:171 , HOH B:3174 , HOH B:3178 , HOH B:3207 , HOH B:3210 , HOH B:3220 , HOH B:3222 , HOH B:3226 , HOH B:3229 , HOH B:3231 , HOH B:3236 , HOH B:3238 , HOH B:3239 , ASN C:77 , GLY C:80 , THR C:81 , ILE C:82 , ASP C:83 , TYR C:86 , ILE C:90 , LYS C:91 , HOH C:175BINDING SITE FOR RESIDUE DUP B 2170
8AC8SOFTWAREARG A:64 , SER A:65 , GLY A:66 , MG A:171 , HOH A:1218 , HOH A:1221 , ASN B:77 , GLY B:80 , THR B:81 , ILE B:82 , ASP B:83 , TYR B:86 , ILE B:90 , LYS B:91 , HOH B:3172 , HOH B:3186 , HOH B:3188 , HOH B:3212 , HOH B:3214 , HOH B:3233 , HOH B:3242 , ARG C:140 , GLY C:144 , HIS C:145BINDING SITE FOR RESIDUE DUP B 3170
9AC9SOFTWARESER A:74 , ILE A:75 , VAL A:76 , HOH A:1174 , SER B:74 , ILE B:75 , VAL B:76 , HOH B:3179 , SER C:74 , ILE C:75 , VAL C:76 , HOH C:215BINDING SITE FOR RESIDUE TRS A 1171

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SJN)

(-) Cis Peptide Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1Ser A:78 -Pro A:79
2Ser B:78 -Pro B:79
3Ser C:78 -Pro C:79

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SJN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SJN)

(-) Exons   (0, 0)

(no "Exon" information available for 1SJN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:131
 aligned with DUT_MYCTO | P9WNS4 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
            DUT_MYCTO     2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE 132
               SCOP domains d1sjna_ A: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)                                                               SCOP domains
               CATH domains 1sjnA00 A:2-132  [code=2.70.40.10, no name defined]                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.................eeee....eee....eeeee..eeee....eeeeee.hhhhhhhhheee....eeee.......eeeeee......eee....eeeeeeeee....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sjn A   2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 

Chain A from PDB  Type:PROTEIN  Length:131
 aligned with DUT_MYCTU | P9WNS5 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:131
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 
            DUT_MYCTU     2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE 132
               SCOP domains d1sjna_ A: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)                                                               SCOP domains
               CATH domains 1sjnA00 A:2-132  [code=2.70.40.10, no name defined]                                                                                 CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeee.................eeee....eee....eeeee..eeee....eeeeee.hhhhhhhhheee....eeee.......eeeeee......eee....eeeeeeeee....eeee...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sjn A   2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDE 132
                                    11        21        31        41        51        61        71        81        91       101       111       121       131 

Chain B from PDB  Type:PROTEIN  Length:140
 aligned with DUT_MYCTO | P9WNS4 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
            DUT_MYCTO     1 MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSR 140
               SCOP domains d1sjnb_ B: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)                                                                        SCOP domains
               CATH domains 1sjnB00 B:1-140  [code=2.70.40.10, no name defined]                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.................eeee....eee....eeeee..eeee....eeeeee.hhhhhhhhheee....eeee.......eeeeee......eee....eeeeeeeee....eeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sjn B   1 MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSR 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain B from PDB  Type:PROTEIN  Length:140
 aligned with DUT_MYCTU | P9WNS5 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
            DUT_MYCTU     1 MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSR 140
               SCOP domains d1sjnb_ B: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)                                                                        SCOP domains
               CATH domains 1sjnB00 B:1-140  [code=2.70.40.10, no name defined]                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee.................eeee....eee....eeeee..eeee....eeeeee.hhhhhhhhheee....eeee.......eeeeee......eee....eeeeeeeee....eeee.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sjn B   1 MSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSR 140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140

Chain C from PDB  Type:PROTEIN  Length:144
 aligned with DUT_MYCTO | P9WNS4 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:144
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141    
            DUT_MYCTO     2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGH 145
               SCOP domains d1sjnc_ C: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)                                                                            SCOP domains
               CATH domains 1sjnC00 C:2-145  [code=2.70.40.10, no name defined]                                                                                              CATH domains
           Pfam domains (1) ------------dUTPase-1sjnC01 C:14-145                                                                                                             Pfam domains (1)
           Pfam domains (2) ------------dUTPase-1sjnC02 C:14-145                                                                                                             Pfam domains (2)
           Pfam domains (3) ------------dUTPase-1sjnC03 C:14-145                                                                                                             Pfam domains (3)
         Sec.struct. author ..eeeeee.................eeee....eee....eeeeeeeeee.....eeeeee.hhhhhhhhheee....eee......eeeeeeee......eee....eeeeeeeee....eeee................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1sjn C   2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGH 145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141    

Chain C from PDB  Type:PROTEIN  Length:144
 aligned with DUT_MYCTU | P9WNS5 from UniProtKB/Swiss-Prot  Length:154

    Alignment length:144
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141    
            DUT_MYCTU     2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGH 145
               SCOP domains d1sjnc_ C: Deoxyuridine 5'-triphosphate nucleotidohydrolase (dUTPase)                                                                            SCOP domains
               CATH domains 1sjnC00 C:2-145  [code=2.70.40.10, no name defined]                                                                                              CATH domains
           Pfam domains (1) ------------dUTPase-1sjnC01 C:14-145                                                                                                             Pfam domains (1)
           Pfam domains (2) ------------dUTPase-1sjnC02 C:14-145                                                                                                             Pfam domains (2)
           Pfam domains (3) ------------dUTPase-1sjnC03 C:14-145                                                                                                             Pfam domains (3)
         Sec.struct. author ..eeeeee.................eeee....eee....eeeeeeeeee.....eeeeee.hhhhhhhhheee....eee......eeeeeeee......eee....eeeeeeeee....eeee................... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1sjn C   2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVELVELVEVSSFDEAGLASTSRGDGGH 145
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Clan: dUTPase (38)

(-) Gene Ontology  (11, 19)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (DUT_MYCTO | P9WNS4)
molecular function
    GO:0004170    dUTP diphosphatase activity    Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006226    dUMP biosynthetic process    The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
    GO:0046080    dUTP metabolic process    The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0006220    pyrimidine nucleotide metabolic process    The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.

Chain A,B,C   (DUT_MYCTU | P9WNS5)
molecular function
    GO:0004170    dUTP diphosphatase activity    Catalysis of the reaction: dUTP + H2O = dUMP + diphosphate.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006226    dUMP biosynthetic process    The chemical reactions and pathways resulting in the formation of dUMP, deoxyuridine monophosphate (2'-deoxyuridine 5'-phosphate).
    GO:0046081    dUTP catabolic process    The chemical reactions and pathways resulting in the breakdown of dUTP, deoxyuridine (5'-)triphosphate.
    GO:0046080    dUTP metabolic process    The chemical reactions and pathways involving dUTP, deoxyuridine (5'-)triphosphate.
    GO:0040007    growth    The increase in size or mass of an entire organism, a part of an organism or a cell.
    GO:0009117    nucleotide metabolic process    The chemical reactions and pathways involving a nucleotide, a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the glycose moiety; may be mono-, di- or triphosphate; this definition includes cyclic nucleotides (nucleoside cyclic phosphates).
    GO:0006220    pyrimidine nucleotide metabolic process    The chemical reactions and pathways involving a pyrimidine nucleotide, a compound consisting of nucleoside (a pyrimidine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

 Visualization

(-) Interactive Views

Asymmetric/Biological Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
    DUP  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    MG  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    NO3  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
    TRS  [ RasMol | Jena3D ]  +environment [ RasMol | Jena3D ]
 
  Sites
    AC1  [ RasMol ]  +environment [ RasMol ]
    AC2  [ RasMol ]  +environment [ RasMol ]
    AC3  [ RasMol ]  +environment [ RasMol ]
    AC4  [ RasMol ]  +environment [ RasMol ]
    AC5  [ RasMol ]  +environment [ RasMol ]
    AC6  [ RasMol ]  +environment [ RasMol ]
    AC7  [ RasMol ]  +environment [ RasMol ]
    AC8  [ RasMol ]  +environment [ RasMol ]
    AC9  [ RasMol ]  +environment [ RasMol ]
 
  Cis Peptide Bonds
    Ser A:78 - Pro A:79   [ RasMol ]  
    Ser B:78 - Pro B:79   [ RasMol ]  
    Ser C:78 - Pro C:79   [ RasMol ]  
 

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1sjn
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  DUT_MYCTO | P9WNS4
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
  DUT_MYCTU | P9WNS5
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  3.6.1.23
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  DUT_MYCTO | P9WNS4
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)
  DUT_MYCTU | P9WNS5
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DUT_MYCTO | P9WNS41mq7 1six 1slh 1sm8 1smc 1snf 2py4 3h6d 3hza 3i93 3loj 4gcy
        DUT_MYCTU | P9WNS51mq7 1six 1slh 1sm8 1smc 1snf 2py4 3h6d 3hza 3i93 3loj 4gcy 5ect 5edd

(-) Related Entries Specified in the PDB File

1six THE PROTEIN DESCRIBED IN THIS ENTRY CONTAINS A C-TERMINAL HIS TAG, WHEREAS THE PROTEIN DESCRIBED BY THE ENTRY 1SIX CONTAINS AN N-TERMINAL HIS TAG. RELATED ID: RV2697C RELATED DB: TARGETDB