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(-) Description

Title :  THE CRYSTAL STRUCTURE AND MECHANISM OF HUMAN GLUTARYL-COA DEHYDROGENASE
 
Authors :  M. Wang, Z. Fu, R. Paschke, S. Goodman, F. E. Frerman, J. J. Kim
Date :  01 Mar 04  (Deposition) - 07 Sep 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Acyl-Coa Dehydrogenase, Decarboxylation, Flavin Protein, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  Z. Fu, M. Wang, R. Paschke, K. S. Rao, F. E. Frerman, J. J. Kim
Crystal Structures Of Human Glutaryl-Coa Dehydrogenase With And Without An Alternate Substrate: Structural Bases Of Dehydrogenation And Decarboxylation Reactions
Biochemistry V. 43 9674 2004
PubMed-ID: 15274622  |  Reference-DOI: 10.1021/BI049290C

(-) Compounds

Molecule 1 - GLUTARYL-COA DEHYDROGENASE
    ChainsA
    EC Number1.3.99.7
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymGCD

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit A
Biological Unit 1 (4x)A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1FAD4Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:133 , LEU A:135 , THR A:136 , GLY A:141 , SER A:142 , TRP A:168 , THR A:170 , LEU A:212 , ARG A:275 , GLN A:277 , PHE A:278 , LEU A:282 , ASN A:285 , GLN A:286 , ASP A:343 , MET A:344 , GLY A:346 , GLY A:347 , ILE A:350 , TYR A:369 , THR A:372 , PHE A:390 , HOH A:401 , HOH A:404 , HOH A:406 , HOH A:407 , HOH A:423 , HOH A:424 , HOH A:425BINDING SITE FOR RESIDUE FAD A 399

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SIQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SIQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (60, 60)

Asymmetric Unit (60, 60)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_071510E64DGCDH_HUMANDisease (GA1)  ---AE20D
02UniProtVAR_000366R88CGCDH_HUMANDisease (GA1)142967670AR44C
03UniProtVAR_000367R94LGCDH_HUMANDisease (GA1)  ---AR50L
04UniProtVAR_000368G101RGCDH_HUMANDisease (GA1)  ---AG57R
05UniProtVAR_000369C115YGCDH_HUMANDisease (GA1)776758971AC71Y
06UniProtVAR_000370A122VGCDH_HUMANDisease (GA1)766325846AA78V
07UniProtVAR_000371R128GGCDH_HUMANDisease (GA1)  ---AR84G
08UniProtVAR_000372R138GGCDH_HUMANDisease (GA1)  ---AR94G
09UniProtVAR_000373S139LGCDH_HUMANDisease (GA1)139851890AS95L
10UniProtVAR_000374V148IGCDH_HUMANDisease (GA1)  ---AV104I
11UniProtVAR_000375R161QGCDH_HUMANDisease (GA1)777201305AR117Q
12UniProtVAR_000376G178RGCDH_HUMANDisease (GA1)749452002AG134R
13UniProtVAR_000377L179RGCDH_HUMANDisease (GA1)774526353AL135R
14UniProtVAR_000378M191TGCDH_HUMANDisease (GA1)149120354AM147T
15UniProtVAR_000379A195TGCDH_HUMANDisease (GA1)  ---AA151T
16UniProtVAR_000380R227PGCDH_HUMANDisease (GA1)121434373AR183P
17UniProtVAR_000381F236LGCDH_HUMANDisease (GA1)747920711AF192L
18UniProtVAR_000382R257QGCDH_HUMANDisease (GA1)751583656AR213Q
19UniProtVAR_000383R257WGCDH_HUMANDisease (GA1)766518430AR213W
20UniProtVAR_060588M263VGCDH_HUMANDisease (GA1)  ---AM219V
21UniProtVAR_000384M266VGCDH_HUMANDisease (GA1)  ---AM222V
22UniProtVAR_071511G268VGCDH_HUMANDisease (GA1)765723076AG224V
23UniProtVAR_000385P278SGCDH_HUMANDisease (GA1)751742575AP234S
24UniProtVAR_000386L283PGCDH_HUMANDisease (GA1)  ---AL239P
25UniProtVAR_000387A293TGCDH_HUMANDisease (GA1)121434371AA249T
26UniProtVAR_000388R294WGCDH_HUMANDisease (GA1)  ---AR250W
27UniProtVAR_000389Y295HGCDH_HUMANDisease (GA1)121434366AY251H
28UniProtVAR_000390A298TGCDH_HUMANPolymorphism761765983AA254T
29UniProtVAR_000391A298VGCDH_HUMANPolymorphism764993096AA254V
30UniProtVAR_000392S305LGCDH_HUMANDisease (GA1)  ---AS261L
31UniProtVAR_000393C308SGCDH_HUMANDisease (GA1)  ---AC264S
32UniProtVAR_000394L309WGCDH_HUMANDisease (GA1)  ---AL265W
33UniProtVAR_000395R313WGCDH_HUMANDisease (GA1)779315456AR269W
34UniProtVAR_000396Q333EGCDH_HUMANDisease (GA1)794726972AQ289E
35UniProtVAR_000397A349TGCDH_HUMANDisease (GA1)  ---AA305T
36UniProtVAR_000398G354RGCDH_HUMANDisease (GA1)  ---AG310R
37UniProtVAR_000399G354SGCDH_HUMANDisease (GA1)768925619AG310S
38UniProtVAR_000400R355CGCDH_HUMANDisease (GA1)781477694AR311C
39UniProtVAR_000401R355HGCDH_HUMANDisease (GA1)748275416AR311H
40UniProtVAR_000402E365KGCDH_HUMANDisease (GA1)121434370AE321K
41UniProtVAR_000403C375RGCDH_HUMANDisease (GA1)  ---AC331R
42UniProtVAR_000404A382TGCDH_HUMANDisease (GA1)567564095AA338T
43UniProtVAR_000405R383CGCDH_HUMANDisease (GA1)150938052AR339C
44UniProtVAR_000406R383HGCDH_HUMANDisease (GA1)764608975AR339H
45UniProtVAR_000407R386QGCDH_HUMANDisease (GA1)398123190AR342Q
46UniProtVAR_000409G390AGCDH_HUMANDisease (GA1)  ---AG346A
47UniProtVAR_000408G390RGCDH_HUMANDisease (GA1)372983141AG346R
48UniProtVAR_000410N392DGCDH_HUMANDisease (GA1)  ---AN348D
49UniProtVAR_000411V400MGCDH_HUMANDisease (GA1)121434372AV356M
50UniProtVAR_000413R402QGCDH_HUMANDisease (GA1)786204626AR358Q
51UniProtVAR_000412R402WGCDH_HUMANDisease (GA1)121434369AR358W
52UniProtVAR_000414H403RGCDH_HUMANDisease (GA1)  ---AH359R
53UniProtVAR_000415N406KGCDH_HUMANDisease (GA1)  ---AN362K
54UniProtVAR_000416L407PGCDH_HUMANDisease (GA1)  ---AL363P
55UniProtVAR_000417E414KGCDH_HUMANDisease (GA1)147611168AE370K
56UniProtVAR_000418T416IGCDH_HUMANDisease (GA1)121434368AT372I
57UniProtVAR_000419A421TGCDH_HUMANDisease (GA1)151201155AA377T
58UniProtVAR_000420A421VGCDH_HUMANDisease (GA1)121434367AA377V
59UniProtVAR_000421T429MGCDH_HUMANDisease (GA1)745360675AT385M
60UniProtVAR_000422A433EGCDH_HUMANDisease (GA1)  ---AA389E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (60, 240)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_071510E64DGCDH_HUMANDisease (GA1)  ---AE20D
02UniProtVAR_000366R88CGCDH_HUMANDisease (GA1)142967670AR44C
03UniProtVAR_000367R94LGCDH_HUMANDisease (GA1)  ---AR50L
04UniProtVAR_000368G101RGCDH_HUMANDisease (GA1)  ---AG57R
05UniProtVAR_000369C115YGCDH_HUMANDisease (GA1)776758971AC71Y
06UniProtVAR_000370A122VGCDH_HUMANDisease (GA1)766325846AA78V
07UniProtVAR_000371R128GGCDH_HUMANDisease (GA1)  ---AR84G
08UniProtVAR_000372R138GGCDH_HUMANDisease (GA1)  ---AR94G
09UniProtVAR_000373S139LGCDH_HUMANDisease (GA1)139851890AS95L
10UniProtVAR_000374V148IGCDH_HUMANDisease (GA1)  ---AV104I
11UniProtVAR_000375R161QGCDH_HUMANDisease (GA1)777201305AR117Q
12UniProtVAR_000376G178RGCDH_HUMANDisease (GA1)749452002AG134R
13UniProtVAR_000377L179RGCDH_HUMANDisease (GA1)774526353AL135R
14UniProtVAR_000378M191TGCDH_HUMANDisease (GA1)149120354AM147T
15UniProtVAR_000379A195TGCDH_HUMANDisease (GA1)  ---AA151T
16UniProtVAR_000380R227PGCDH_HUMANDisease (GA1)121434373AR183P
17UniProtVAR_000381F236LGCDH_HUMANDisease (GA1)747920711AF192L
18UniProtVAR_000382R257QGCDH_HUMANDisease (GA1)751583656AR213Q
19UniProtVAR_000383R257WGCDH_HUMANDisease (GA1)766518430AR213W
20UniProtVAR_060588M263VGCDH_HUMANDisease (GA1)  ---AM219V
21UniProtVAR_000384M266VGCDH_HUMANDisease (GA1)  ---AM222V
22UniProtVAR_071511G268VGCDH_HUMANDisease (GA1)765723076AG224V
23UniProtVAR_000385P278SGCDH_HUMANDisease (GA1)751742575AP234S
24UniProtVAR_000386L283PGCDH_HUMANDisease (GA1)  ---AL239P
25UniProtVAR_000387A293TGCDH_HUMANDisease (GA1)121434371AA249T
26UniProtVAR_000388R294WGCDH_HUMANDisease (GA1)  ---AR250W
27UniProtVAR_000389Y295HGCDH_HUMANDisease (GA1)121434366AY251H
28UniProtVAR_000390A298TGCDH_HUMANPolymorphism761765983AA254T
29UniProtVAR_000391A298VGCDH_HUMANPolymorphism764993096AA254V
30UniProtVAR_000392S305LGCDH_HUMANDisease (GA1)  ---AS261L
31UniProtVAR_000393C308SGCDH_HUMANDisease (GA1)  ---AC264S
32UniProtVAR_000394L309WGCDH_HUMANDisease (GA1)  ---AL265W
33UniProtVAR_000395R313WGCDH_HUMANDisease (GA1)779315456AR269W
34UniProtVAR_000396Q333EGCDH_HUMANDisease (GA1)794726972AQ289E
35UniProtVAR_000397A349TGCDH_HUMANDisease (GA1)  ---AA305T
36UniProtVAR_000398G354RGCDH_HUMANDisease (GA1)  ---AG310R
37UniProtVAR_000399G354SGCDH_HUMANDisease (GA1)768925619AG310S
38UniProtVAR_000400R355CGCDH_HUMANDisease (GA1)781477694AR311C
39UniProtVAR_000401R355HGCDH_HUMANDisease (GA1)748275416AR311H
40UniProtVAR_000402E365KGCDH_HUMANDisease (GA1)121434370AE321K
41UniProtVAR_000403C375RGCDH_HUMANDisease (GA1)  ---AC331R
42UniProtVAR_000404A382TGCDH_HUMANDisease (GA1)567564095AA338T
43UniProtVAR_000405R383CGCDH_HUMANDisease (GA1)150938052AR339C
44UniProtVAR_000406R383HGCDH_HUMANDisease (GA1)764608975AR339H
45UniProtVAR_000407R386QGCDH_HUMANDisease (GA1)398123190AR342Q
46UniProtVAR_000409G390AGCDH_HUMANDisease (GA1)  ---AG346A
47UniProtVAR_000408G390RGCDH_HUMANDisease (GA1)372983141AG346R
48UniProtVAR_000410N392DGCDH_HUMANDisease (GA1)  ---AN348D
49UniProtVAR_000411V400MGCDH_HUMANDisease (GA1)121434372AV356M
50UniProtVAR_000413R402QGCDH_HUMANDisease (GA1)786204626AR358Q
51UniProtVAR_000412R402WGCDH_HUMANDisease (GA1)121434369AR358W
52UniProtVAR_000414H403RGCDH_HUMANDisease (GA1)  ---AH359R
53UniProtVAR_000415N406KGCDH_HUMANDisease (GA1)  ---AN362K
54UniProtVAR_000416L407PGCDH_HUMANDisease (GA1)  ---AL363P
55UniProtVAR_000417E414KGCDH_HUMANDisease (GA1)147611168AE370K
56UniProtVAR_000418T416IGCDH_HUMANDisease (GA1)121434368AT372I
57UniProtVAR_000419A421TGCDH_HUMANDisease (GA1)151201155AA377T
58UniProtVAR_000420A421VGCDH_HUMANDisease (GA1)121434367AA377V
59UniProtVAR_000421T429MGCDH_HUMANDisease (GA1)745360675AT385M
60UniProtVAR_000422A433EGCDH_HUMANDisease (GA1)  ---AA389E

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

Asymmetric Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACYL_COA_DH_1PS00072 Acyl-CoA dehydrogenases signature 1.GCDH_HUMAN178-190  1A:134-146
2ACYL_COA_DH_2PS00073 Acyl-CoA dehydrogenases signature 2.GCDH_HUMAN387-406  1A:343-362
Biological Unit 1 (2, 8)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1ACYL_COA_DH_1PS00072 Acyl-CoA dehydrogenases signature 1.GCDH_HUMAN178-190  4A:134-146
2ACYL_COA_DH_2PS00073 Acyl-CoA dehydrogenases signature 2.GCDH_HUMAN387-406  4A:343-362

(-) Exons   (9, 9)

Asymmetric Unit (9, 9)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1ENST000002222141ENSE00001409053chr19:13001974-1300201643GCDH_HUMAN-00--
1.2ENST000002222142ENSE00002191084chr19:13002085-13002209125GCDH_HUMAN1-31310--
1.3ENST000002222143ENSE00001597102chr19:13002301-1300233636GCDH_HUMAN31-43130--
1.4ENST000002222144ENSE00001685900chr19:13002645-13002788144GCDH_HUMAN43-91491A:3-4745
1.5ENST000002222145ENSE00001695685chr19:13002930-1300299263GCDH_HUMAN91-112221A:47-6822
1.7ENST000002222147ENSE00001685991chr19:13004297-13004467171GCDH_HUMAN112-169581A:68-12558
1.8ENST000002222148ENSE00001668484chr19:13006806-13006935130GCDH_HUMAN169-212441A:125-16844
1.9aENST000002222149aENSE00000682677chr19:13007019-13007235217GCDH_HUMAN212-284731A:168-24073
1.10ENST0000022221410ENSE00000682676chr19:13007724-13007827104GCDH_HUMAN285-319351A:241-27535
1.11ENST0000022221411ENSE00000682675chr19:13008117-13008242126GCDH_HUMAN319-361431A:275-31743
1.12ENST0000022221412ENSE00000682672chr19:13008517-13008677161GCDH_HUMAN361-415551A:317-37155
1.13aENST0000022221413aENSE00001335835chr19:13010282-13010782501GCDH_HUMAN415-438241A:371-39222

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:390
 aligned with GCDH_HUMAN | Q92947 from UniProtKB/Swiss-Prot  Length:438

    Alignment length:390
                                    56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436
           GCDH_HUMAN    47 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA 436
               SCOP domains d1siqa2 A:3-238 Glutaryl-CoA dehydrogenase GCDH                                                                                                                                                                                             d1siqa1 A:239-392 Glutaryl-CoA dehydrogenase GCDH                                                                                                          SCOP domains
               CATH domains 1siqA01 A:3-130 Butyryl-Coa Dehydrogenase, subunit A, domain 1                                                                  1siqA02 A:131-237 Butyryl-CoA Dehydrogenase, subunit A, domain 2                                           1siqA03 A:238-392 Butyryl-CoA Dehydrogenase, subunit A, domain 3                                                                                            CATH domains
               Pfam domains --------------Acyl-CoA_dh_N-1siqA03 A:17-128                                                                                  ---Acyl-CoA_dh_M-1siqA02 A:132-186                        --------------------------------------------------------Acyl-CoA_dh_1-1siqA01 A:243-385                                                                                                                ------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhh.......ee..ee..hhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....eeee........hhhhh..eeeee....eeeeeeeeeeee.hhhh.eeeeeeee....eeeeeee.....ee..............eeeeeeeeeeee.hhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...... Sec.struct. author
             SAPs(SNPs) (1) -----------------D-----------------------C-----L------R-------------Y------V-----G---------GL--------I------------Q----------------RR-----------T---T-------------------------------P--------L--------------------Q-----V--V-V---------S----P---------TWH--T------L--SW---W-------------------E---------------T----RC---------K---------R------TC--Q---A-D-------M-QR--KP------K-I----T-------M---E--- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------W----------------------------------------V-------------------------------------------------------SH---------------------------H------R-----------W------------------V--------------- SAPs(SNPs) (2)
                    PROSITE -----------------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACYL_COA_DH_2       ------------------------------ PROSITE
           Transcript 1 (1) Exon 1.4  PDB: A:3-47 UniProt: 43-91         --------------------Exon 1.7  PDB: A:68-125 UniProt: 112-169                  ------------------------------------------Exon 1.9a  PDB: A:168-240 UniProt: 212-284                               Exon 1.10  PDB: A:241-275          -----------------------------------------Exon 1.12  PDB: A:317-371 UniProt: 361-415             --------------------- Transcript 1 (1)
           Transcript 1 (2) --------------------------------------------Exon 1.5  PDB: A:47-68--------------------------------------------------------Exon 1.8  PDB: A:125-168 UniProt: 169-212   ----------------------------------------------------------------------------------------------------------Exon 1.11  PDB: A:275-317 UniProt: 319-361 -----------------------------------------------------Exon 1.13a             Transcript 1 (2)
                 1siq A   3 EFDWQDPLVLEEQLTTDEILIRDTFRTYCQERLMPRILLANRNEVFHREIISEMGELGVLGPTIKGYGCAGVSSVAYGLLARELERVDSGYRSAMSVQSSLVMHPIYAYGSEEQRQKYLPQLAKGELLGCFGLTEPNSGSDPSSMETRAHYNSSNKSYTLNGTKTWITNSPMADLFVVWARCEDGCIRGFLLEKGMRGLSAPRIQGKFSLRASATGMIIMDGVEVPEENVLPGASSLGGPFGCLNNARYGIAWGVLGASEFCLHTARQYALDRMQFGVPLARNQLIQKKLADMLTEITLGLHACLQLGRLKDQDKAAPEMVSLLKRNNCGKALDIARQARDMLGGNGISDEYHVIRHAMNLEAVNTYEGTHDIHALILGRAITGIQAFTA 392
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric Unit

(-) CATH Domains  (3, 3)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (3, 3)

Asymmetric Unit

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A   (GCDH_HUMAN | Q92947)
molecular function
    GO:0003995    acyl-CoA dehydrogenase activity    Catalysis of the reaction: acyl-CoA + acceptor = 2,3-dehydroacyl-CoA + reduced acceptor.
    GO:0009055    electron carrier activity    Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
    GO:0000062    fatty-acyl-CoA binding    Interacting selectively and non-covalently with acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty acyl group.
    GO:0050660    flavin adenine dinucleotide binding    Interacting selectively and non-covalently with FAD, flavin-adenine dinucleotide, the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes, in either the oxidized form, FAD, or the reduced form, FADH2.
    GO:0004361    glutaryl-CoA dehydrogenase activity    Catalysis of the reaction: glutaryl-CoA + acceptor = crotonoyl-CoA + CO2 + reduced acceptor.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016627    oxidoreductase activity, acting on the CH-CH group of donors    Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a hydrogen or electron acceptor.
    GO:0052890    oxidoreductase activity, acting on the CH-CH group of donors, with a flavin as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-CH group acts as a hydrogen or electron donor and reduces a flavin.
biological process
    GO:0006637    acyl-CoA metabolic process    The chemical reactions and pathways involving acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with an acyl group.
    GO:0033539    fatty acid beta-oxidation using acyl-CoA dehydrogenase    A fatty acid beta-oxidation pathway in which the initial step of each oxidation cycle, which converts an acyl-CoA to a trans-2-enoyl-CoA, is catalyzed by acyl-CoA dehydrogenase; the electrons removed by oxidation pass through the respiratory chain to oxygen and leave H2O as the product. Fatty acid beta-oxidation begins with the addition of coenzyme A to a fatty acid, and ends when only two or three carbons remain (as acetyl-CoA or propionyl-CoA respectively).
    GO:0019395    fatty acid oxidation    The removal of one or more electrons from a fatty acid, with or without the concomitant removal of a proton or protons, by reaction with an electron-accepting substance, by addition of oxygen or by removal of hydrogen.
    GO:0046949    fatty-acyl-CoA biosynthetic process    The chemical reactions and pathways resulting in the formation of a fatty-acyl-CoA, any derivative of coenzyme A in which the sulfhydryl group is in thiolester linkage with a fatty-acyl group.
    GO:0055088    lipid homeostasis    Any process involved in the maintenance of an internal steady state of lipid within an organism or cell.
    GO:0006554    lysine catabolic process    The chemical reactions and pathways resulting in the breakdown of lysine, 2,6-diaminohexanoic acid.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
    GO:0006568    tryptophan metabolic process    The chemical reactions and pathways involving tryptophan, the chiral amino acid 2-amino-3-(1H-indol-3-yl)propanoic acid.
cellular component
    GO:0005759    mitochondrial matrix    The gel-like material, with considerable fine structure, that lies in the matrix space, or lumen, of a mitochondrion. It contains the enzymes of the tricarboxylic acid cycle and, in some organisms, the enzymes concerned with fatty acid oxidation.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.

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        GCDH_HUMAN | Q929471sir 2r0m 2r0n

(-) Related Entries Specified in the PDB File

1sir THE CRYSTAL STRUCTURE AND MECHANISM OF HUMAN GLUTARYL-COA DEHYDROGENASE