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(-) Description

Title :  PUTATIVE ABC TRANSPORTER (ATP-BINDING PROTEIN) FROM PYROCOCCUS FURIOSUS PFU-867808-001
 
Authors :  Z. J. Liu, W. Tempel, A. Shah, L. Chen, D. Lee, L. -L. C. Kelley, B. D. Dilla J. P. Rose, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr. , H. S. Lee, F. L. Po C. Shah, F. J. Sugar, M. W. W. Adams, D. C. Richardson, J. S. Richardson, Southeast Collaboratory For Structural Genomics (Secsg)
Date :  24 Feb 04  (Deposition) - 10 Aug 04  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Pyrococcus Furiosus, Abc Transporter, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. J. Liu, W. Tempel, A. Shah, L. Chen, D. Lee, L. -L. C. Kelley, B. D. Dillard, J. P. Rose, J. C. Eneh, R. C. Hopkins, F. E. Jenney Jr. , H. S. Lee, F. L. Poole Ii, C. Shah, F. J. Sugar, M. W. W. Adams, D. C. Richardson, J. S. Richardson, B. C. Wang, Southeast Collaboratory For Structural Genomics
Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - PUTATIVE ABC TRANSPORTER
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: PYROCOCCUS FURIOSUS
    Organism Taxid: 186497
    Other Details: THE PROTEIN WAS CLONED, EXPRESSED AND PURIFIED BY THE SECSG PYROCOCCUS PROTEIN PRODUCTION GROUP (M.W.W.ADAMS, P.S.BRERETON, M.IZUMI, F.E.JENNEY JR., H.-S.LEE, F.L.POOLE II, C.SHAH, F.SUGAR) UNDER THE DIRECTION OF M.W.W.ADAMS.
    Strain: DSM 3638

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 3)

Asymmetric/Biological Unit (2, 3)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2NA1Ligand/IonSODIUM ION

(-) Sites  (3, 3)

Asymmetric Unit (3, 3)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:37 , GLY A:39 , LYS A:40BINDING SITE FOR RESIDUE CL A 207
2AC2SOFTWARELYS A:122 , GLU A:125BINDING SITE FOR RESIDUE NA A 208
3AC3SOFTWAREARG A:133BINDING SITE FOR RESIDUE CL A 209

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SGW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SGW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SGW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SGW)

(-) Exons   (0, 0)

(no "Exon" information available for 1SGW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:200
 aligned with Q8U2E3_PYRFU | Q8U2E3 from UniProtKB/TrEMBL  Length:206

    Alignment length:200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
         Q8U2E3_PYRFU     1 MKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYST 200
               SCOP domains d1sgwa_ A: Putative ABC transporter PF0895                                                                                                                                                               SCOP domains
               CATH domains 1sgwA00 A:1-200 P-loop containing nucleotide triphosphate hydrolases                                                                                                                                     CATH domains
               Pfam domains ----------------------------------------ABC_tran-1sgwA01 A:41-154                                                                                         ---------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...eeeeeeeeeee....eeee.....hhhhhhhhhh......eeeeee..ee.hhhhh.eeee..........hhhhhhhhhhhhh....hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhh.....eeeee.........hhhhhhhhhhhhhhhhheeeeee........eeee.hhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sgw A   1 SKLEIRDLSVGYDKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYST 200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: P-loop_NTPase (1112)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q8U2E3_PYRFU | Q8U2E3)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0016887    ATPase activity    Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.

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