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(-) Description

Title :  CRYSTAL STRUCTURE OF KINESIN-LIKE CALMODULIN BINDING PROTEIN
 
Authors :  M. V. Vinogradova, V. S. Reddy, A. S. Reddy, E. P. Sablin, R. J. Fletterick
Date :  13 Feb 04  (Deposition) - 22 Jun 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Kinesin, Minus-End Directed, Ca2+/Calmodulin Regulated, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. V. Vinogradova, V. S. Reddy, A. S. Reddy, E. P. Sablin, R. J. Fletterick
Crystal Structure Of Kinesin Regulated By Ca(2+)-Calmodulin.
J. Biol. Chem. V. 279 23504 2004
PubMed-ID: 14988396  |  Reference-DOI: 10.1074/JBC.M400741200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - KINESIN HEAVY CHAIN-LIKE PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Taxid562
    FragmentMOTOR DOMAIN WITH ADJACENT C-TERMINAL REGULATORY DOMAIN
    Organism CommonPOTATO
    Organism ScientificSOLANUM TUBEROSUM
    Organism Taxid4113
    SynonymKINESIN-LIKE CALMODULIN BINDING PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1ADP1Ligand/IonADENOSINE-5'-DIPHOSPHATE
2MG1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHOH A:14 , HOH A:15 , HOH A:16 , HOH A:17 , ADP A:600 , THR A:977BINDING SITE FOR RESIDUE MG A 601
2AC2SOFTWAREHOH A:4 , HOH A:14 , HOH A:15 , HOH A:16 , HOH A:19 , HOH A:110 , MG A:601 , ARG A:895 , ARG A:897 , THR A:972 , GLY A:973 , GLY A:975 , LYS A:976 , THR A:977 , PHE A:978BINDING SITE FOR RESIDUE ADP A 600

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SDM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SDM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1SDM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SDM)

(-) Exons   (0, 0)

(no "Exon" information available for 1SDM)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:344
 aligned with Q41460_SOLTU | Q41460 from UniProtKB/TrEMBL  Length:1265

    Alignment length:364
                                   898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      1128      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228      1238      1248    
        Q41460_SOLTU    889 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYWKEQAGRKGDDEELEEIQDE 1252
               SCOP domains d1sdma_ A: Kinesin heavy chain-like protein                                                                                                                                                                                                                                                                                                                                  SCOP domains
               CATH domains 1sdmA00 A:889-1252 Kinesin                                                                                                                                                                                                                                                                                                                                                   CATH domains
               Pfam domains ------Kinesin-1sdmA01 A:895-1210                                                                                                                                                                                                                                                                                                  -----------------------           -------- Pfam domains
         Sec.struct. author ..eeeeee...hhhhhhh.....eee....eeeee.....eeeee..eee....hhhhhhhh.hhhhhhhhh..eeeeeee.....hhhhhhh......hhhhhhhhhhhhhhhhh...eeeeeeeeeeee....eee............eeee.....eeee....eee.hhhhhhhhhhhhhhhhh.......hhhhhheeeeeeeeeeee.....eeeeeeeeee.........---------.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhh........eeeeeeee..hhhhhhhhhhhhhhhhhhh.........eehhhhhhhhh.....-----------..ee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1sdm A  889 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDTKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIARGKLSFVDLAGSERVKK---------EAQSINKSLSALGDVISALSSGNQHIPYRNHKLTMLMSDSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSKEVARLKKLVSYW-----------ELEEIQDE 1252
                                   898       908       918       928       938       948       958       968       978       988       998      1008      1018      1028      1038      1048      1058      1068      1078      1088      1098      1108      1118      |  -      1138      1148      1158      1168      1178      1188      1198      1208      1218      1228    |    -      1248    
                                                                                                                                                                                                                                                                     1125      1135                                                                                              1233        1245       

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (Q41460_SOLTU | Q41460)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0008017    microtubule binding    Interacting selectively and non-covalently with microtubules, filaments composed of tubulin monomers.
    GO:0003777    microtubule motor activity    Catalysis of movement along a microtubule, coupled to the hydrolysis of a nucleoside triphosphate (usually ATP).
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
biological process
    GO:0007018    microtubule-based movement    A microtubule-based process that results in the movement of organelles, other microtubules, or other cellular components. Examples include motor-driven movement along microtubules and movement driven by polymerization or depolymerization of microtubules.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.

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 Related Entries

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UniProtKB/TrEMBL
        Q41460_SOLTU | Q414603cnz 3cob

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