1SBZ - JenaLib

Biol.Unit 1 - manually (Jmol Viewer)

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF DODECAMERIC FMN-DEPENDENT UBIX-LIKE DECARBOXYLASE FROM ESCHERICHIA COLI O157:H7

Authors :   E. S. Rangarajan, Y. Li, P. Iannuzzi, A. Tocilj, L. -W. Hung, A. Matte, M. Montreal-Kingston Bacterial Structural Genomics Initiative

Date :   11 Feb 04 (Deposition) - 26 Oct 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (3x)

Keywords :   Fmn Binding, Pad1, Ubix, Montreal-Kingston Bacterial Structural Genomics Initiative, Bsgi, Structural Genomics, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. S. Rangarajan, Y. Li, P. Iannuzzi, A. Tocilj, L. -W. Hung, A. Matte, M. Cygler
Crystal Structure Of A Dodecameric Fmn-Dependent Ubix-Like Decarboxylase (Pad1) From Escherichia Coli O157: H7.
Protein Sci. V. 13 3006 2004
PubMed-ID: 15459342 | Reference-DOI: 10.1110/PS.04953004

Molecule 1 - PROBABLE AROMATIC ACID DECARBOXYLASE
	Chains	:	A, B, C, D
	EC Number	:	4.1.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PFO4
	Expression System Strain	:	DL41 (DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	PAD1, Z4047, ECS3593
	Organism Scientific	:	ESCHERICHIA COLI
	Organism Taxid	:	83334

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (3x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 48)

No.	Name	Count	Type	Full Name
1	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	MSE	44	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 144)

No.	Name	Count	Type	Full Name
1	FMN	12	Ligand/Ion	FLAVIN MONONUCLEOTIDE
2	MSE	132	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	THR A:8 , GLY A:9 , ALA A:10 , THR A:11 , SER A:36 , SER A:87 , MSE A:88 , LYS A:89 , THR A:90 , ARG A:122 , GLU A:123 , HOH A:1411 , HOH A:1414 , HOH A:1419 , GLN D:67 , ALA D:99 , ARG D:105 , HOH D:1463	BINDING SITE FOR RESIDUE FMN A 1401
2	AC2	SOFTWARE	THR B:8 , GLY B:9 , ALA B:10 , THR B:11 , SER B:36 , TRP B:38 , GLN B:67 , SER B:87 , MSE B:88 , LYS B:89 , THR B:90 , ALA B:99 , ARG B:105 , ARG B:122 , GLU B:123 , HOH B:1408 , HOH B:1414 , HOH B:1422 , HOH B:1424	BINDING SITE FOR RESIDUE FMN B 1402
3	AC3	SOFTWARE	GLN A:67 , ALA A:99 , ARG A:105 , THR C:8 , GLY C:9 , ALA C:10 , THR C:11 , SER C:36 , SER C:87 , MSE C:88 , LYS C:89 , THR C:90 , ARG C:122 , GLU C:123 , HOH C:1405 , HOH C:1413 , HOH C:1424 , HOH C:1429	BINDING SITE FOR RESIDUE FMN C 1403
4	AC4	SOFTWARE	GLN C:67 , ALA C:99 , ARG C:105 , THR D:8 , GLY D:9 , ALA D:10 , THR D:11 , SER D:36 , TRP D:38 , SER D:87 , MSE D:88 , LYS D:89 , THR D:90 , ARG D:122 , GLU D:123 , HOH D:1410 , HOH D:1414 , HOH D:1421 , HOH D:1425	BINDING SITE FOR RESIDUE FMN D 1404

(no "SS Bond" information available for 1SBZ)

Asymmetric Unit

No.	Residues
1	Ile A:84	-	Pro A:85
2	Mse A:124	-	Pro A:125
3	Ile B:84	-	Pro B:85
4	Mse B:124	-	Pro B:125
5	Ile C:84	-	Pro C:85
6	Mse C:124	-	Pro C:125
7	Ile D:84	-	Pro D:85
8	Mse D:124	-	Pro D:125

Asymmetric Unit (4, 16)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_PADL_ECOLX_001 *	K	37	T	PADL_ECOLX	---	---	A/B/C/D	K	37	T
2	UniProt	VAR_PADL_ECOLX_002 *	R	52	H	PADL_ECOLX	---	---	A/B/C/D	R	52	H
3	UniProt	VAR_PADL_ECOLX_003 *	I	70	T	PADL_ECOLX	---	---	A/B/C/D	T	70	T
4	UniProt	VAR_PADL_ECOLX_004 *	M	124	T	PADL_ECOLX	---	---	A/B/C/D	M	124	T
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (4, 48)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_PADL_ECOLX_001 *	K	37	T	PADL_ECOLX	---	---	A/B/C/D	K	37	T
2	UniProt	VAR_PADL_ECOLX_002 *	R	52	H	PADL_ECOLX	---	---	A/B/C/D	R	52	H
3	UniProt	VAR_PADL_ECOLX_003 *	I	70	T	PADL_ECOLX	---	---	A/B/C/D	T	70	T
4	UniProt	VAR_PADL_ECOLX_004 *	M	124	T	PADL_ECOLX	---	---	A/B/C/D	M	124	T
	* ID not provided by source

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 1SBZ)

(no "Exon" information available for 1SBZ)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:183
 aligned with PADL_ECO57 | P69772 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
           PADL_ECO57     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHPYARRWQGL 186
               SCOP domains d1sbza_ A: Probable aromatic acid decarboxylase Pad1                                                                                                                                       SCOP domains
               CATH domains -1sbzA00 A:2-186  [code=3.40.50.1950, no name defined]                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhhh..eee......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhh...ee............hhhhhhhhhhhhhhhhhh....---..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T-------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1sbz A   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLEHP---RWQGL 186
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170       | - |    
                            |     7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                           178 182    
                            1-MSE                                                                                                                                    140-MSE   |                                      
                                                                                                                                                                         144-MSE                                      
                                                                                                                                                                             148-MSE

Chain A from PDB  Type:PROTEIN  Length:183
 aligned with PADL_ECOLX | P69774 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:186
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180      
           PADL_ECOLX     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAAIISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHPHARRWQGL 186
               SCOP domains d1sbza_ A: Probable aromatic acid decarboxylase Pad1                                                                                                                                       SCOP domains
               CATH domains -1sbzA00 A:2-186  [code=3.40.50.1950, no name defined]                                                                                                                                     CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhhh..eee......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhhh.eeeeee.....hhhhhhhhhhhhh...ee............hhhhhhhhhhhhhhhhhh....---..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T-------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1sbz A   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLEHP---RWQGL 186
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170       | - |    
                            1-MSE 7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                           178 182    
                                                                                                                                                                     140-MSE   |                                      
                                                                                                                                                                         144-MSE                                      
                                                                                                                                                                             148-MSE

Chain B from PDB  Type:PROTEIN  Length:176
 aligned with PADL_ECO57 | P69772 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      
           PADL_ECO57     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLE 176
               SCOP domains d1sbzb_ B: Probable aromatic acid decarboxylase Pad1                                                                                                                             SCOP domains
               CATH domains -1sbzB00 B:2-176  [code=3.40.50.1950, no name defined]                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhh...eee......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T---------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sbz B   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLE 176
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170      
                            |     7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                            
                            1-MSE                                                                                                                                    140-MSE   |                            
                                                                                                                                                                         144-MSE                            
                                                                                                                                                                             148-MSE

Chain B from PDB  Type:PROTEIN  Length:176
 aligned with PADL_ECOLX | P69774 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      
           PADL_ECOLX     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAAIISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLE 176
               SCOP domains d1sbzb_ B: Probable aromatic acid decarboxylase Pad1                                                                                                                             SCOP domains
               CATH domains -1sbzB00 B:2-176  [code=3.40.50.1950, no name defined]                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhh...eee......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T---------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sbz B   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLE 176
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170      
                            |     7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                            
                            1-MSE                                                                                                                                    140-MSE   |                            
                                                                                                                                                                         144-MSE                            
                                                                                                                                                                             148-MSE

Chain C from PDB  Type:PROTEIN  Length:176
 aligned with PADL_ECO57 | P69772 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      
           PADL_ECO57     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLE 176
               SCOP domains d1sbzc_ C: Probable aromatic acid decarboxylase Pad1                                                                                                                             SCOP domains
               CATH domains -1sbzC00 C:2-176  [code=3.40.50.1950, no name defined]                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhh...ee.......hhhhh.......eeeeeehhhhhhhhhhh...hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T---------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sbz C   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLE 176
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170      
                            1-MSE 7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                            
                                                                                                                                                                     140-MSE   |                            
                                                                                                                                                                         144-MSE                            
                                                                                                                                                                             148-MSE

Chain C from PDB  Type:PROTEIN  Length:176
 aligned with PADL_ECOLX | P69774 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:176
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170      
           PADL_ECOLX     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAAIISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLE 176
               SCOP domains d1sbzc_ C: Probable aromatic acid decarboxylase Pad1                                                                                                                             SCOP domains
               CATH domains -1sbzC00 C:2-176  [code=3.40.50.1950, no name defined]                                                                                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhh...ee.......hhhhh.......eeeeeehhhhhhhhhhh...hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T---------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sbz C   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLE 176
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170      
                            1-MSE 7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                            
                                                                                                                                                                     140-MSE   |                            
                                                                                                                                                                         144-MSE                            
                                                                                                                                                                             148-MSE

Chain D from PDB  Type:PROTEIN  Length:185
 aligned with PADL_ECO57 | P69772 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     
           PADL_ECO57     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHPYARRWQG 185
               SCOP domains d1sbzd_ D: Probable aromatic acid decarboxylase Pad1                                                                                                                                      SCOP domains
               CATH domains -1sbzD00 D:2-185  [code=3.40.50.1950, no name defined]                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhh...eee......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sbz D   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLEHPYARRWQG 185
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170       180     
                            1-MSE 7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                                     
                                                                                                                                                                     140-MSE   |                                     
                                                                                                                                                                         144-MSE                                     
                                                                                                                                                                             148-MSE

Chain D from PDB  Type:PROTEIN  Length:185
 aligned with PADL_ECOLX | P69774 from UniProtKB/Swiss-Prot  Length:197

    Alignment length:185
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180     
           PADL_ECOLX     1 MKLIVGMTGATGAPLGVALLQALREMPNVETHLVMSKWAKTTIELETPYSARDVAALADFSHNPADQAAIISSGSFRTDGMIVIPCSMKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREMPLSTIHLENMLALSRMGVAMVPPMPAFYNHPETVDDIVHHVVARVLDQFGLEHPHARRWQG 185
               SCOP domains d1sbzd_ D: Probable aromatic acid decarboxylase Pad1                                                                                                                                      SCOP domains
               CATH domains -1sbzD00 D:2-185  [code=3.40.50.1950, no name defined]                                                                                                                                    CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee....hhhhhhhhhhhhhh....eeeeeehhhhhhhhhhhh..hhhhhhh...eee......hhhhh......eeeeeeehhhhhhhhhhh...hhhhhhhhhhhhh..eeeeee.....hhhhhhhhhhhhhh..ee............hhhhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------T--------------H-----------------T-----------------------------------------------------T------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1sbz D   1 mKLIVGmTGATGAPLGVALLQALREmPNVETHLVmSKWAKTTIELETPYSARDVAALADFSHNPADQAATISSGSFRTDGmIVIPCSmKTLAGIRAGYADGLVGRAADVVLKEGRKLVLVPREmPLSTIHLENmLALSRmGVAmVPPmPAFYNHPETVDDIVHHVVARVLDQFGLEHPYARRWQG 185
                            |     | 10        20     |  30    |   40        50        60        70        80|      |90       100       110       120   |   130   |   140   |   150       160       170       180     
                            1-MSE 7-MSE             26-MSE   35-MSE                                        81-MSE 88-MSE                             124-MSE   134-MSE |   |   |                                     
                                                                                                                                                                     140-MSE   |                                     
                                                                                                                                                                         144-MSE                                     
                                                                                                                                                                             148-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.1950, no name defined] (9)

Escherichia coli o157:h7. Organism_taxid: 83334. Strain: o157:h7. (1)

1a	1sbzB00	B:2-176
1b	1sbzC00	C:2-176
1c	1sbzA00	A:2-186
1d	1sbzD00	D:2-185

(no "Pfam Domain" information available for 1SBZ)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PADL_ECO57 | P69772)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004659	prenyltransferase activity	Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0051188	cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein.

Chain A,B,C,D (PADL_ECOLX | P69774)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0004659	prenyltransferase activity	Catalysis of the transfer of a prenyl group from one compound (donor) to another (acceptor).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0051188	cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of a cofactor, a substance that is required for the activity of an enzyme or other protein.

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	PADL_ECOLX \| P69774
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Description

Compounds

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Ligands, Modified Residues, Ions (2, 48)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

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