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(-) Description

Title :  X-RAY STRUCTURE OF HOMO SAPIENS PROTEIN FLJ36880
 
Authors :  B. A. Manjasetty, F. H. Niesen, H. Delbrueck, F. Goetz, V. Sievert, K. Buessow, J. Behlke, U. Heinemann
Date :  09 Feb 04  (Deposition) - 12 Oct 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Fumarylacetoacetatehydrolase Family, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  B. A. Manjasetty, F. H. Niesen, H. Delbruck, F. Gotz, V. Sievert, K. Bussow, J. Behlke, U. Heinemann
X-Ray Structure Of Fumarylacetoacetate Hydrolase Family Member Homo Sapiens Flj36880.
Biol. Chem. V. 385 935 2004
PubMed-ID: 15551868  |  Reference-DOI: 10.1515/BC.2004.122
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN FLJ36880
    ChainsA, B
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPSFEP250B074
    Expression System StrainSCS1
    Expression System Taxid562
    Expression System Vector TypePQTEV
    GeneDKFZP566J2046
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2MG3Ligand/IonMAGNESIUM ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLU A:71 , GLU A:73 , ASP A:102 , LYS A:123 , HOH A:320 , HOH A:353 , HOH A:358BINDING SITE FOR RESIDUE MG A 225
2AC2SOFTWAREVAL B:23 , GLU B:71 , GLU B:73 , ASP B:102 , HOH B:246 , HOH B:272 , HOH B:273BINDING SITE FOR RESIDUE MG B 225
3AC3SOFTWARELYS A:18 , ASN A:19 , HOH A:312 , LYS B:18 , ASN B:19 , HOH B:242BINDING SITE FOR RESIDUE MG A 226
4AC4SOFTWAREPRO A:118 , TRP A:119 , HOH A:352 , TRP B:119 , HOH B:226BINDING SITE FOR RESIDUE CL A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1SAW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1SAW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (1, 2)

Asymmetric/Biological Unit (1, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_049014D110NFAHD1_HUMANPolymorphism3743853A/BD110N

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1SAW)

(-) Exons   (0, 0)

(no "Exon" information available for 1SAW)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:206
 aligned with FAHD1_HUMAN | Q6P587 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:217
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       
          FAHD1_HUMAN     8 RPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224
               SCOP domains d1sawa_ A: FAHD1 (Flj           36880, YISKL)                                                                                                                                                                             SCOP domains
               CATH domains 1sawA00 A:8-224 Fumar           ylacetoacetate hydrolase, domain 2                                                                                                                                                        CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee.....-----------....eeeee...eee....ee.......eee.eeeeeee..........hhhh.eeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...ee..........eeeeee..eeeeeee.hhh..hhhhhhhhhhh........eee.......eee....eeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------N------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1saw A   8 RPLSRFWEWGKNIVCVGRNYA-----------SEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224
                                    17        27|        -  |     47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       
                                               28          40                                                                                                                                                                                        

Chain B from PDB  Type:PROTEIN  Length:208
 aligned with FAHD1_HUMAN | Q6P587 from UniProtKB/Swiss-Prot  Length:224

    Alignment length:219
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215         
          FAHD1_HUMAN     6 ASRPLSRFWEWGKNIVCVGRNYADHVREMRSAVLSEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224
               SCOP domains d1sawb_ B: FAHD1 (Flj36           880, YISKL)                                                                                                                                                                               SCOP domains
               CATH domains 1sawB00 B:6-224 Fumaryl           acetoacetate hydrolase, domain 2                                                                                                                                                          CATH domains
           Pfam domains (1) ------------FAA_hydrola           se-1sawB01 B:18-220                                                                                                                                                                  ---- Pfam domains (1)
           Pfam domains (2) ------------FAA_hydrola           se-1sawB02 B:18-220                                                                                                                                                                  ---- Pfam domains (2)
         Sec.struct. author ...hhhhhhhhh.eeeee.....-----------....eeeee...eee....ee.......eee.eeeeeee.......hhhhhhh.eeeeeeee..eehhhhhhhhhhh..hhhhhh....eee...ee.hhh......eeeeee..eeeeeee.hhh..hhhhhhhhhhhhh......eee.......eee....eeeeee...eeeeeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------N------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1saw B   6 ASRPLSRFWEWGKNIVCVGRNYA-----------SEPVLFLKPSTAYAPEGSPILMPAYTRNLHHELELGVVMGKRCRAVPEAAAMDYVGGYALCLDMTARDVQDECKKKGLPWTLAKSFTASCPVSAFVPKEKIPDPHKLKLWLKVNGELRQEGETSSMIFSIPYIISYVSKIITLEEGDIILTGTPKGVGPVKENDEIEAGIHGLVSMTFKVEKPEY 224
                                    15        25  |      -    |   45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215         
                                                 28          40                                                                                                                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: FAH (11)

(-) Gene Ontology  (14, 14)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B   (FAHD1_HUMAN | Q6P587)
molecular function
    GO:0018773    acetylpyruvate hydrolase activity    Catalysis of the reaction: acetylpyruvate + H(2)O = acetate + H(+) + pyruvate.
    GO:0047621    acylpyruvate hydrolase activity    Catalysis of the reaction: a 3-acylpyruvate + H2O = a carboxylate + pyruvate.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0034545    fumarylpyruvate hydrolase activity    Catalysis of the reaction: fumarylpyruvate + H2O = fumarate + pyruvate + H+.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016829    lyase activity    Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0008948    oxaloacetate decarboxylase activity    Catalysis of the reaction: oxaloacetate = pyruvate + CO2.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005829    cytosol    The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
    GO:0005743    mitochondrial inner membrane    The inner, i.e. lumen-facing, lipid bilayer of the mitochondrial envelope. It is highly folded to form cristae.
    GO:0005739    mitochondrion    A semiautonomous, self replicating organelle that occurs in varying numbers, shapes, and sizes in the cytoplasm of virtually all eukaryotic cells. It is notably the site of tissue respiration.
    GO:0005654    nucleoplasm    That part of the nuclear content other than the chromosomes or the nucleolus.

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(-) Related Entries Specified in the PDB File

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