1S56 - JenaLib

Asymmetric Unit (12, 12)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:33 , PHE A:46 , GLN A:58 , HEC A:144	BINDING SITE FOR RESIDUE CYN A 145
02	AC2	SOFTWARE	TYR B:33 , HEM B:144	BINDING SITE FOR RESIDUE CYN B 245
03	AC3	SOFTWARE	GLY B:2 , LEU B:3 , ARG B:6 , TYR B:16 , GLY B:21 , HIS B:22	BINDING SITE FOR RESIDUE PO4 B 301
04	AC4	SOFTWARE	GLN A:79 , VAL A:80 , GLN A:82 , GLY B:83	BINDING SITE FOR RESIDUE K A 401
05	AC5	SOFTWARE	PHE A:45 , PHE A:46 , THR A:49 , ARG A:53 , LEU A:54 , GLN A:58 , PHE A:61 , TYR A:72 , GLY A:74 , ALA A:75 , MET A:77 , VAL A:80 , HIS A:81 , ARG A:84 , ILE A:86 , PHE A:91 , VAL A:94 , ILE A:119 , VAL A:126 , CYN A:145 , XE A:203	BINDING SITE FOR RESIDUE HEC A 144
06	AC6	SOFTWARE	PHE B:45 , THR B:49 , ARG B:53 , LEU B:54 , LYS B:57 , GLN B:58 , PHE B:61 , TYR B:72 , GLY B:74 , ALA B:75 , MET B:77 , VAL B:80 , HIS B:81 , ARG B:84 , ILE B:86 , PHE B:91 , VAL B:94 , VAL B:126 , XE B:204 , CYN B:245 , HOH B:326	BINDING SITE FOR RESIDUE HEM B 144
07	AC7	SOFTWARE	PHE A:62 , HEC A:144	BINDING SITE FOR RESIDUE XE A 203
08	AC8	SOFTWARE	PHE B:32 , PHE B:62 , VAL B:94 , HEM B:144	BINDING SITE FOR RESIDUE XE B 204
09	AC9	SOFTWARE	ILE B:119 , ALA B:120	BINDING SITE FOR RESIDUE XE B 205
10	BC1	SOFTWARE	LEU B:3 , ASP B:17 , LEU B:116 , ALA B:120	BINDING SITE FOR RESIDUE XE B 206
11	BC2	SOFTWARE	PHE A:32 , PHE A:62 , LEU A:98	BINDING SITE FOR RESIDUE XE A 207
12	BC3	SOFTWARE	LEU A:3 , ALA A:120	BINDING SITE FOR RESIDUE XE A 208

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:128
 aligned with TRHBN_MYCTO | P9WN24 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:128
                                    11        21        31        41        51        61        71        81        91       101       111       121        
          TRHBN_MYCTO     2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSG 129
               SCOP domains d1s56a_ A: Protozoan/bacterial hemoglobin                                                                                        SCOP domains
               CATH domains 1s56A00 A:2-129 Globins                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------GLOBIN_FAM_2         ------------------------------------------------ PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s56 A   2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSG 129
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain A from PDB  Type:PROTEIN  Length:128
 aligned with TRHBN_MYCTU | P9WN25 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:128
                                    11        21        31        41        51        61        71        81        91       101       111       121        
          TRHBN_MYCTU     2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSG 129
               SCOP domains d1s56a_ A: Protozoan/bacterial hemoglobin                                                                                        SCOP domains
               CATH domains 1s56A00 A:2-129 Globins                                                                                                          CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhh....hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh.hhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------GLOBIN_FAM_2         ------------------------------------------------ PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s56 A   2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSG 129
                                    11        21        31        41        51        61        71        81        91       101       111       121

Chain B from PDB  Type:PROTEIN  Length:135
 aligned with TRHBN_MYCTO | P9WN24 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
          TRHBN_MYCTO     2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV 136
               SCOP domains d1s56b_ B: Protozoan/bacterial hemoglobin                                                                                               SCOP domains
               CATH domains 1s56B00 B:2-136 Globins                                                                                                                 CATH domains
           Pfam domains (1) ------------Bac_globin-1s56B01 B:14-129                                                                                         ------- Pfam domains (1)
           Pfam domains (2) ------------Bac_globin-1s56B02 B:14-129                                                                                         ------- Pfam domains (2)
         Sec.struct. author hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhh.........hhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (2) -----------------------------------------------------------GLOBIN_FAM_2         ------------------------------------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s56 B   2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Chain B from PDB  Type:PROTEIN  Length:135
 aligned with TRHBN_MYCTU | P9WN25 from UniProtKB/Swiss-Prot  Length:136

    Alignment length:135
                                    11        21        31        41        51        61        71        81        91       101       111       121       131     
          TRHBN_MYCTU     2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV 136
               SCOP domains d1s56b_ B: Protozoan/bacterial hemoglobin                                                                                               SCOP domains
               CATH domains 1s56B00 B:2-136 Globins                                                                                                                 CATH domains
           Pfam domains (1) ------------Bac_globin-1s56B01 B:14-129                                                                                         ------- Pfam domains (1)
           Pfam domains (2) ------------Bac_globin-1s56B02 B:14-129                                                                                         ------- Pfam domains (2)
         Sec.struct. author hhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhh..hhhhhhhhhhhhhhhhh.........hhhhhhh....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh.hhhhhh......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------------------------------------GLOBIN_FAM_2         ------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s56 B   2 GLLSRLRKREPISIYDKIGGHEAIEVVVEDFYVRVLADDQLSAFFSGTNMSRLKGKQVEFFAAALGGPEPYTGAPMKQVHQGRGITMHHFSLVAGHLADALTAAGVPSETITEILGVIAPLAVDVTSGESTTAPV 136
                                    11        21        31        41        51        61        71        81        91       101       111       121       131

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 2)

CATH Domains (1, 2)

Pfam Domains (1, 2)

Gene Ontology (13, 19)

Asymmetric Unit(hide GO term definitions)

Chain A,B (TRHBN_MYCTU | P9WN25)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0008941	nitric oxide dioxygenase activity	Catalysis of the reaction: 2 NO + 2 O2 + NADPH + H+ = 2 nitrate + NADP+.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0051410	detoxification of nitrogen compound	Any process that reduces or removes the toxicity of nitrogenous compounds which are dangerous or toxic. This includes the aerobic conversion of toxic compounds to harmless substances.
	GO:0052060	evasion or tolerance by symbiont of host-produced nitric oxide	The process in which an organism avoids the effects of nitric oxide produced as a defense response by the host organism. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0046210	nitric oxide catabolic process	The chemical reactions and pathways resulting in the breakdown of nitric oxide, nitrogen monoxide (NO), a colorless gas only slightly soluble in water.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.

Chain A,B (TRHBN_MYCTO | P9WN24)

molecular function
	GO:0020037	heme binding	Interacting selectively and non-covalently with heme, any compound of iron complexed in a porphyrin (tetrapyrrole) ring.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0019825	oxygen binding	Interacting selectively and non-covalently with oxygen (O2).
	GO:0005344	oxygen transporter activity	Enables the directed movement of oxygen into, out of or within a cell, or between cells.
biological process
	GO:0015671	oxygen transport	The directed movement of oxygen (O2) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.

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	1s56
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	TRHBN_MYCTO \| P9WN24
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	TRHBN_MYCTU \| P9WN25
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 14)

Sites (12, 12)