1S4C - JenaLib

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Title :   YHCH PROTEIN (HI0227) COPPER COMPLEX

Authors :   A. Teplyakov, G. Obmolova, J. Toedt, G. L. Gilliland

Date :   15 Jan 04 (Deposition) - 14 Jun 05 (Release) - 16 Feb 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.20

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,D  (1x)
Biol. Unit 2: B,C  (1x)

Keywords :   Double-Stranded Beta-Helix, Structural Genomics, Unknown Function, Structural Genomics, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Teplyakov, G. Obmolova, J. Toedt, M. Y. Galperin, G. L. Gilliland
Crystal Structure Of The Bacterial Yhch Protein Indicates A Role In Sialic Acid Catabolism.
J. Bacteriol. V. 187 5520 2005
PubMed-ID: 16077096 | Reference-DOI: 10.1128/JB.187.16.5520-5527.2005

Molecule 1 - PROTEIN HI0227
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	HI0227
	Organism Scientific	:	HAEMOPHILUS INFLUENZAE
	Organism Taxid	:	727

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A			D
Biological Unit 2 (1x)	:		B	C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 5)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CU	4	Ligand/Ion	COPPER (II) ION

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	ACT	1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION

Biological Unit 2 (0, 0)

No.	Name	Count	Type	Full Name
1	ACT	-1	Ligand/Ion	ACETATE ION
2	CU	-1	Ligand/Ion	COPPER (II) ION

Asymmetric Unit (5, 5)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HIS A:65 , ASP A:70 , HIS A:130 , ACT A:205	BINDING SITE FOR RESIDUE CU A 201
2	AC2	SOFTWARE	GLU B:63 , HIS B:65 , ASP B:70 , HIS B:130 , HOH B:227	BINDING SITE FOR RESIDUE CU B 202
3	AC3	SOFTWARE	GLU C:63 , HIS C:65 , ASP C:70 , HIS C:130 , HOH C:215	BINDING SITE FOR RESIDUE CU C 203
4	AC4	SOFTWARE	HIS D:65 , ASP D:70 , GLN D:72 , HIS D:130 , HOH D:232	BINDING SITE FOR RESIDUE CU D 204
5	AC5	SOFTWARE	GLU A:63 , ASP A:70 , GLN A:72 , HIS A:130 , LYS A:149 , CU A:201	BINDING SITE FOR RESIDUE ACT A 205

(no "SS Bond" information available for 1S4C)

(no "Cis Peptide Bond" information available for 1S4C)

(no "SAP(SNP)/Variant" information available for 1S4C)

(no "PROSITE Motif" information available for 1S4C)

(no "Exon" information available for 1S4C)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:150
 aligned with Y227_HAEIN | P44583 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
           Y227_HAEIN     1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVVNGKTEKIKKLVVKVPVKLI 155
               SCOP domains d1s4ca_ A: Hypothetical protein HI0227                                                                                                                      SCOP domains
               CATH domains 1s4cA00 A:1-155  [code=2.60.120.370, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhhhhhhhhhhhhhhh..eeee.....eeeee.....hhhhh.eee...eeeeeeeee..eeeee.....hhhhh.........eee......eeeee...eeeee.....eeeee.-----...eeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s4c A   1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCV-----EKIKKLVVKVPVKLI 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130    |    -|      150     
                                                                                                                                                                135   141

Chain B from PDB  Type:PROTEIN  Length:155
 aligned with Y227_HAEIN | P44583 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
           Y227_HAEIN     1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVVNGKTEKIKKLVVKVPVKLI 155
               SCOP domains d1s4cb_ B: Hypothetical protein HI0227                                                                                                                      SCOP domains
               CATH domains 1s4cB00 B:1-155  [code=2.60.120.370, no name defined]                                                                                                       CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhhhhhhhhhhhhhhh..eeee.....eeeee.....hhhhh.eee...eeeeeeeee..eeeeee....hhhhh.........eee.....eeeeee...eeeee.....eeeee.........eeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s4c B   1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVVNGKTEKIKKLVVKVPVKLI 155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150

Chain C from PDB  Type:PROTEIN  Length:147
 aligned with Y227_HAEIN | P44583 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
           Y227_HAEIN     1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVVNGKTEKIKKLVVKVPVKLI 155
               SCOP domains d1s4cc_ C: Hypothetical protein HI0227                                                                                                                      SCOP domains
               CATH domains 1s4cC00 C:1-155  [code=2.60.120.370, no name defined        ]                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhhhhhhhhhhhhhhh..eeee.....eeeee..--------.eee...eeeeeeeee..eeeee.....hhhhh.........eee......eeeee...eeeee.....eeeee.........eeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s4c C   1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEP--------KAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVVNGKTEKIKKLVVKVPVKLI 155
                                    10        20        30        40        50 |       -|       70        80        90       100       110       120       130       140       150     
                                                                              52       61

Chain D from PDB  Type:PROTEIN  Length:140
 aligned with Y227_HAEIN | P44583 from UniProtKB/Swiss-Prot  Length:155

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
           Y227_HAEIN     1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEPETAEPSSKKAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCVVNGKTEKIKKLVVKVPVKLI 155
               SCOP domains d1s4cd_ D: Hypothetical protein HI0227                                                                                                                      SCOP domains
               CATH domains 1s4cD00 D:1-155  [code=2.60.120.370, no name defined        ]                                                                                               CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee..........hhhhhhhhhhhhh........eeee.....eeeee..--------.eee...eeeeeeeee..eeeeee..................eee.....eeeeee...eeeee.....eeeee.-------.eeeeeeee.hhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s4c D   1 MIISSLTNPNFKVGLPKVIAEVCDYLNTLDLNALENGRHDINDQIYMNVMEP--------KAELHHEYLDVQVLIRGTENIEVGATYPNLSKYEDYNEADDYQLCADIDDKFTVTMKPKMFAVFYPYEPHKPCCV-------IKKLVVKVPVKLI 155
                                    10        20        30        40        50 |       -|       70        80        90       100       110       120       130    |    -  |    150     
                                                                              52       61                                                                       135     143

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Double-stranded beta-helix (580)

Superfamily: Clavaminate synthase-like (197)

Family: YhcH-like (2)

Protein domain: Hypothetical protein HI0227 (2)

Haemophilus influenzae [TaxId: 727] (2)

1a	d1s4ca_	A:
1b	d1s4cb_	B:
1c	d1s4cc_	C:
1d	d1s4cd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Jelly Rolls (1293)

Homologous Superfamily: [code=2.60.120.370, no name defined] (2)

Haemophilus influenzae. Organism_taxid: 727. (1)

1a	1s4cC00	C:1-155
1b	1s4cD00	D:1-155
1c	1s4cA00	A:1-155
1d	1s4cB00	B:1-155

(no "Pfam Domain" information available for 1S4C)

Asymmetric Unit(hide GO term definitions)

(no "Gene Ontology" information available for 1S4C)

Asymmetric Unit
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	Y227_HAEIN \| P44583	:	1jop

1jop	HI0227 MERCURY DERIVATIVE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 5)

Sites (5, 5)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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