Chain A from PDB Type:PROTEIN Length:473
aligned with Q9LCB8_STRIT | Q9LCB8 from UniProtKB/TrEMBL Length:532
Alignment length:473
65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405 415 425 435 445 455 465 475 485 495 505 515 525
Q9LCB8_STRIT 56 NSEAAKKALNDYIWGLQYDKLNILTHQGEKLKNHSSREAFHRPGEYVVIEKKKQSISNATSKLSVSSANDDRIFPGALLKADQSLLENLPTLIPVNRGKTTISVNLPGLKNGESNLTVENPSNSTVRTAVNNLVEKWIQNYSKTHAVPARMQYESISAQSMSQLQAKFGADFSKVGAPLNVDFSSVHKGEKQVFIANFRQVYYTASVDSPNSPSALFGSGITPTDLINRGVNSKTPPVYVSNVSYGRAMYVKFETTSKSTKVQAAIDAVVKGAKLKAGTEYENILKNTKITAVVLGGNPGEASKVITGNIDTLKDLIQKGSNFSAQSPAVPISYTTSFVKDNSIATIQNNTDYIETKVTSYKDGALTLNHDGAFVARFYVYWEELGHDADGYETIRSRSWSGNGYNRGAHYSTTLRFKGNVRNIRVKVLGATGLAWEPWRLIYSKNDLPLVPQRNISTWGTTLHPQFEDKVVK 528
SCOP domains d1s3ra_ A: automated matches SCOP domains
CATH domains 1s3rA01 1s3rA02 A:80-115,A:401-417 1s3rA01 A:56-79,A:116-203,A:257-300,A:377-400 HIV-1 Reverse Transcriptase; Chain -----------------------------------------------------1s3rA01 HIV-1 Reverse Transcriptase; Chain ----------------------------------------------------------------------------1s3rA01 1s3rA02 1s3rA04 A:418-528 Perfringolysin, domain 4 CATH domains
Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
Sec.struct. author hhhhhhhhhhhhhhh.........eee..ee...eeeeeeee..eeeeeeeeeeeeeeee..ee....hhhhh....eee.hhhhhh............eeeee..........eeee...hhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..hhhhhhhhhh.hhhhhhhhhh.hhhhhhh...eeeeeeeeeeeeeeee....hhhhhh....hhhhhhhh.......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhh.........hhhhhh...eeeeee.........eeeehhhhhhhhhhhh.........eeeeeeeee........eeeeeeeeeeeeeeee.eeeeeee.....eeeeeeeeeeee.....eeeeeee............eeeeee...eeeeeeeeeee.......eeeeeeeeee....eeeeeeee....eeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1s3r A 56 NSEAAKKALNDYIWGLQYDKLNILTHQGEKLKNHSSREAFHRPGEYVVIEKKKQSISNATSKLSVSSANDDRIFPGALLKADQSLLENLPTLIPVNRGKTTISVNLPGLKNGESNLTVENPSNSTVRTAVNNLVEKWIQNYSKTHAVPARMQYESISAQSMSQLQAKFGADFSKVGAPLNVDFSSVHKGEKQVFIANFRQVYYTASVDSPNSPSALFGSGITPTDLINRGVNSKTPPVYVSNVSYGRAMYVKFETTSKSTKVQAAIDAVVKGAKLKAGTEYENILKNTKITAVVLGGNPGEASKVITGNIDTLKDLIQKGSNFSAQSPAVPISYTTSFVKDNSIATIQNNTDYIETKVTSYKDGALTLNHDGAFVARFYVYWEELGHDADGYETIRSRSWSGNGYNRGAHYSTTLRFKGNVRNIRVKVLGATGLAWEPWRLIYSKNDLPLVPQRNISTWGTTLHPQFEDKVVK 528
65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405 415 425 435 445 455 465 475 485 495 505 515 525
Chain B from PDB Type:PROTEIN Length:473
aligned with Q9LCB8_STRIT | Q9LCB8 from UniProtKB/TrEMBL Length:532
Alignment length:473
65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405 415 425 435 445 455 465 475 485 495 505 515 525
Q9LCB8_STRIT 56 NSEAAKKALNDYIWGLQYDKLNILTHQGEKLKNHSSREAFHRPGEYVVIEKKKQSISNATSKLSVSSANDDRIFPGALLKADQSLLENLPTLIPVNRGKTTISVNLPGLKNGESNLTVENPSNSTVRTAVNNLVEKWIQNYSKTHAVPARMQYESISAQSMSQLQAKFGADFSKVGAPLNVDFSSVHKGEKQVFIANFRQVYYTASVDSPNSPSALFGSGITPTDLINRGVNSKTPPVYVSNVSYGRAMYVKFETTSKSTKVQAAIDAVVKGAKLKAGTEYENILKNTKITAVVLGGNPGEASKVITGNIDTLKDLIQKGSNFSAQSPAVPISYTTSFVKDNSIATIQNNTDYIETKVTSYKDGALTLNHDGAFVARFYVYWEELGHDADGYETIRSRSWSGNGYNRGAHYSTTLRFKGNVRNIRVKVLGATGLAWEPWRLIYSKNDLPLVPQRNISTWGTTLHPQFEDKVVK 528
SCOP domains d1s3rb_ B: automated matches SCOP domains
CATH domains 1s3rB01 1s3rB02 B:80-115,B:401-417 1s3rB01 B:56-79,B:116-203,B:257-300,B:377-400 HIV-1 Reverse Transcriptase; Chain -----------------------------------------------------1s3rB01 HIV-1 Reverse Transcriptase; Chain ----------------------------------------------------------------------------1s3rB01 1s3rB02 1s3rB04 B:418-528 Perfringolysin, domain 4 CATH domains
Pfam domains (1) ----Thiol_cytolysin-1s3rB01 B:60-526 -- Pfam domains (1)
Pfam domains (2) ----Thiol_cytolysin-1s3rB02 B:60-526 -- Pfam domains (2)
Sec.struct. author hhhhhhhhhhhhhhh...hhhhhheee.......ee..eeee..eeeeeeeeeeeeeeee..ee.............eee.hhhhhh............eeeee..........eeee...hhhhhhhhhhhhhhhhhhhhh.......eeeeeeee..hhhhhhhhhh.hhhhhhhhhh.hhhhhhh...eeeeeeeeeeeeeeee....hhhhhh....hhhhhhhh.......eeeeeeeeeeeeeeeeeee.....hhhhhhhhhhh........hhhhhhhheeeeeeee..........eeehhhhhhhhhhhh.........eeeeeeeee........eeeeeeeeeeeeeeee.eeeeeee......eeeeeeeeeee.....eeeeeee............eeeeee...eeeeeeeeeee.......eeeeeee.......eeeeeeee....eeeeeee.. Sec.struct. author
SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
1s3r B 56 NSEAAKKALNDYIWGLQYDKLNILTHQGEKLKNHSSREAFHRPGEYVVIEKKKQSISNATSKLSVSSANDDRIFPGALLKADQSLLENLPTLIPVNRGKTTISVNLPGLKNGESNLTVENPSNSTVRTAVNNLVEKWIQNYSKTHAVPARMQYESISAQSMSQLQAKFGADFSKVGAPLNVDFSSVHKGEKQVFIANFRQVYYTASVDSPNSPSALFGSGITPTDLINRGVNSKTPPVYVSNVSYGRAMYVKFETTSKSTKVQAAIDAVVKGAKLKAGTEYENILKNTKITAVVLGGNPGEASKVITGNIDTLKDLIQKGSNFSAQSPAVPISYTTSFVKDNSIATIQNNTDYIETKVTSYKDGALTLNHDGAFVARFYVYWEELGHDADGYETIRSRSWSGNGYNRGAHYSTTLRFKGNVRNIRVKVLGATGLAWEPWRLIYSKNDLPLVPQRNISTWGTTLHPQFEDKVVK 528
65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405 415 425 435 445 455 465 475 485 495 505 515 525
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(purple background, 'x', labelled with number + name, e.g. ACE or NH2) |
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extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|' |