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(-) Description

Title :  A NOVEL NAD BINDING PROTEIN REVEALED BY THE CRYSTAL STRUCTURE OF E. COLI 2,3-DIKETOGULONATE REDUCTASE (YIAK) NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ER82
 
Authors :  F. Forouhar, I. Lee, J. Benach, K. Kulkarni, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong, Northeast Structural Genomics Consortium (Nesg)
Date :  07 Jan 04  (Deposition) - 20 Jan 04  (Release) - 14 Apr 10  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.20
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Biol. Unit 4:  G,H  (1x)
Keywords :  Alpha Beta Dimeric Protein, Oxidoreductase, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, I. Lee, J. Benach, K. Kulkarni, R. Xiao, T. B. Acton, G. T. Montelione, L. Tong
A Novel Nad-Binding Protein Revealed By The Crystal Structure Of 2, 3-Diketo-L-Gulonate Reductase (Yiak).
J. Biol. Chem. V. 279 13148 2004
PubMed-ID: 14718529  |  Reference-DOI: 10.1074/JBC.M313580200

(-) Compounds

Molecule 1 - HYPOTHETICAL OXIDOREDUCTASE YIAK
    Chains: A, B, C, D, E, F, G, H
    EC Number: 1.1.1.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: YIAK, B3575
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562

 Structural Features

(-) Chains, Units

  12345678
Asymmetric Unit : ABCDEFGH
Biological Unit 1 (1x): AB      
Biological Unit 2 (1x):   CD    
Biological Unit 3 (1x):     EF  
Biological Unit 4 (1x):       GH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 132)

Asymmetric Unit (3, 132)
No.NameCountTypeFull Name
1MSE120Mod. Amino AcidSELENOMETHIONINE
2NAD6Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3TLA6Ligand/IonL(+)-TARTARIC ACID
Biological Unit 1 (3, 34)
No.NameCountTypeFull Name
1MSE30Mod. Amino AcidSELENOMETHIONINE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3TLA2Ligand/IonL(+)-TARTARIC ACID
Biological Unit 2 (3, 32)
No.NameCountTypeFull Name
1MSE30Mod. Amino AcidSELENOMETHIONINE
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 3 (3, 32)
No.NameCountTypeFull Name
1MSE30Mod. Amino AcidSELENOMETHIONINE
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3TLA1Ligand/IonL(+)-TARTARIC ACID
Biological Unit 4 (3, 34)
No.NameCountTypeFull Name
1MSE30Mod. Amino AcidSELENOMETHIONINE
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3TLA2Ligand/IonL(+)-TARTARIC ACID

(-) Sites  (12, 12)

Asymmetric Unit (12, 12)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:44 , ARG A:48 , HIS A:116 , SER A:179 , TYR A:180 , GLY A:181 , NAD A:401 , HOH A:1555 , HOH A:1928BINDING SITE FOR RESIDUE TLA A 501
02AC2SOFTWAREHIS B:44 , ARG B:48 , HIS B:116 , SER B:179 , TYR B:180 , GLY B:181 , NAD B:402 , HOH B:2210BINDING SITE FOR RESIDUE TLA B 502
03AC3SOFTWAREHIS D:44 , ARG D:48 , HIS D:116 , SER D:179 , TYR D:180 , GLY D:181 , NAD D:404 , HOH D:2372 , HOH D:2373BINDING SITE FOR RESIDUE TLA D 504
04AC4SOFTWAREHIS F:44 , ARG F:48 , HIS F:116 , SER F:179 , TYR F:180 , GLY F:181 , NAD F:406 , HOH F:1752 , HOH F:1843 , HOH F:2398BINDING SITE FOR RESIDUE TLA F 506
05AC5SOFTWAREHIS G:44 , ARG G:48 , HIS G:116 , SER G:179 , TYR G:180 , GLY G:181 , NAD G:407 , HOH G:1169 , HOH G:1508 , HOH G:2319BINDING SITE FOR RESIDUE TLA G 507
06AC6SOFTWAREHIS H:44 , ARG H:48 , HIS H:116 , SER H:179 , TYR H:180 , GLY H:181 , NAD H:408 , HOH H:2119BINDING SITE FOR RESIDUE TLA H 508
07AC7SOFTWAREHIS A:44 , HIS A:116 , THR A:156 , PRO A:158 , MSE A:170 , VAL A:171 , ASP A:172 , MSE A:173 , SER A:174 , ARG A:301 , GLY A:304 , GLU A:306 , TLA A:501 , HOH A:1075 , HOH A:1282 , HOH A:1289 , HOH A:1637 , HOH A:2133 , HOH A:2134 , HOH A:2368 , TRP B:147 , TRP B:224 , LYS B:225BINDING SITE FOR RESIDUE NAD A 401
08AC8SOFTWARETRP A:224 , LYS A:225 , HIS B:44 , HIS B:116 , TRP B:117 , THR B:156 , PRO B:158 , MSE B:170 , VAL B:171 , ASP B:172 , MSE B:173 , SER B:174 , ARG B:301 , GLY B:304 , GLU B:306 , TLA B:502 , HOH B:1044 , HOH B:1112 , HOH B:1293 , HOH B:1393 , HOH B:1530 , HOH B:1564 , HOH B:1947 , HOH B:2147 , HOH B:2369BINDING SITE FOR RESIDUE NAD B 402
09AC9SOFTWARETRP C:224 , LYS C:225 , HIS D:44 , HIS D:116 , TRP D:117 , THR D:138 , THR D:156 , PRO D:158 , MSE D:170 , VAL D:171 , ASP D:172 , MSE D:173 , SER D:174 , GLY D:304 , GLU D:306 , TLA D:504 , HOH D:1033 , HOH D:1134 , HOH D:1440 , HOH D:2376 , HOH D:2380BINDING SITE FOR RESIDUE NAD D 404
10BC1SOFTWARETRP E:224 , LYS E:225 , HOH E:1470 , HIS F:44 , HIS F:116 , TRP F:117 , THR F:156 , PRO F:158 , MSE F:170 , VAL F:171 , ASP F:172 , MSE F:173 , SER F:174 , ARG F:301 , PRO F:303 , GLY F:304 , GLU F:306 , TLA F:506 , HOH F:1090 , HOH F:1443 , HOH F:1686BINDING SITE FOR RESIDUE NAD F 406
11BC2SOFTWAREHIS G:44 , HIS G:116 , THR G:156 , PRO G:158 , MSE G:170 , VAL G:171 , ASP G:172 , MSE G:173 , SER G:174 , ARG G:301 , GLY G:304 , GLU G:306 , TLA G:507 , HOH G:1061 , HOH G:1109 , HOH G:1152 , HOH G:1246 , HOH G:1338 , HOH G:2100 , TRP H:147 , TRP H:224 , LYS H:225 , HOH H:1630BINDING SITE FOR RESIDUE NAD G 407
12BC3SOFTWARETRP G:147 , TRP G:224 , LYS G:225 , HIS H:44 , HIS H:116 , TRP H:117 , THR H:138 , THR H:156 , PRO H:158 , MSE H:170 , VAL H:171 , ASP H:172 , MSE H:173 , SER H:174 , ARG H:301 , GLY H:304 , GLU H:306 , TLA H:508 , HOH H:1144 , HOH H:1748 , HOH H:1850 , HOH H:2148 , HOH H:2378BINDING SITE FOR RESIDUE NAD H 408

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1S20)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Thr A:166 -Pro A:167
2Thr B:166 -Pro B:167
3Thr C:166 -Pro C:167
4Thr D:166 -Pro D:167
5Thr E:166 -Pro E:167
6Thr F:166 -Pro F:167
7Thr G:166 -Pro G:167
8Thr H:166 -Pro H:167

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S20)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1S20)

(-) Exons   (0, 0)

(no "Exon" information available for 1S20)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:334
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:334
                                                                                                                                                                                                                                                                                                                                                                     332  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |  
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL--   -
               SCOP domains d1s20a_ A: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -1s20A01 A:2-64,A:317-334  [code=1.10.1530.10, no name defined] 1s20A02 A:65-164,A:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20A03 A:181-220                       -1s20A02 A:65-164,A:222-270                       ----------------------------------------------1s20A01            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee....hhhhhhhhhhhh.eeeeeee....................eeeee.....eeeee.....hhhhhhhhhhh........ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeeee.....hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhee.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 A   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE 334
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330    
                            |                             32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                             
                            1-MSE                                                                                       94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                               
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                        
                                                                                                                                                                                                          177-MSE|                                                                                                                                                        
                                                                                                                                                                                                               182-MSE                                                                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:334
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:334
                                                                                                                                                                                                                                                                                                                                                                     332  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |  
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL--   -
               SCOP domains d1s20b_ B: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -1s20B01 B:2-64,B:317-334  [code=1.10.1530.10, no name defined] 1s20B02 B:65-164,B:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20B03 B:181-220                       -1s20B02 B:65-164,B:222-270                       ----------------------------------------------1s20B01            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhh...eeeeee....................eeeee.....eeeee.....hhhhhhhhhhhh.......ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhee.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 B   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE 334
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330    
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                             
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                               
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                        
                                                                                                                                                                                                          177-MSE|                                                                                                                                                        
                                                                                                                                                                                                               182-MSE                                                                                                                                                    


Chain C from PDB  Type:PROTEIN  Length:334
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:334
                                                                                                                                                                                                                                                                                                                                                                     332  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |  
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL--   -
               SCOP domains d1s20c_ C: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -1s20C01 C:2-64,C:317-334  [code=1.10.1530.10, no name defined] 1s20C02 C:65-164,C:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20C03 C:181-220                       -1s20C02 C:65-164,C:222-270                       ----------------------------------------------1s20C01            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhhh.eeeeeee....................eeeee.....eeeee.....hhhhhhhhhhhh.......ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeeee.....hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhee.hhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 C   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE 334
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330    
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                             
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                               
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                        
                                                                                                                                                                                                          177-MSE|                                                                                                                                                        
                                                                                                                                                                                                               182-MSE                                                                                                                                                    


Chain D from PDB  Type:PROTEIN  Length:334
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:334
                                                                                                                                                                                                                                                                                                                                                                     332  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |  
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL--   -
               SCOP domains d1s20d_ D: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -1s20D01 D:2-64,D:317-334  [code=1.10.1530.10, no name defined] 1s20D02 D:65-164,D:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20D03 D:181-220                       -1s20D02 D:65-164,D:222-270                       ----------------------------------------------1s20D01            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee....hhhhhhhhhhhh.eeeeeee....................eeeee.....eeeee.....hhhhhhhhhhh........ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeeee.....hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhh...ee.hhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 D   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE 334
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330    
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                             
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                               
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                        
                                                                                                                                                                                                          177-MSE|                                                                                                                                                        
                                                                                                                                                                                                               182-MSE                                                                                                                                                    


Chain E from PDB  Type:PROTEIN  Length:334
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:334
                                                                                                                                                                                                                                                                                                                                                                     332  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |  
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL--   -
               SCOP domains d1s20e_ E: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -1s20E01 E:2-64,E:317-334  [code=1.10.1530.10, no name defined] 1s20E02 E:65-164,E:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20E03 E:181-220                       -1s20E02 E:65-164,E:222-270                       ----------------------------------------------1s20E01            CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee....hhhhhhhhhhh...eeeeee....................eeeee.....eeeee.....hhhhhhhhhhhh.......ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhee.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 E   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE 334
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330    
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                             
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                               
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                        
                                                                                                                                                                                                          177-MSE|                                                                                                                                                        
                                                                                                                                                                                                               182-MSE                                                                                                                                                    


Chain F from PDB  Type:PROTEIN  Length:333
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:333
                                                                                                                                                                                                                                                                                                                                                                     332 
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 | 
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL-   -
               SCOP domains d1s20f_ F: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                           SCOP domains
               CATH domains -1s20F01 F:2-64,F:317-333  [code=1.10.1530.10, no name defined] 1s20F02 F:65-164,F:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20F03 F:181-220                       -1s20F02 F:65-164,F:222-270                       ----------------------------------------------1s20F01           CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee.....hhhhhhhhhh...eeeeee....................eeeee.....eeeee.....hhhhhhhhhhh........ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeee......hhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhh.ee.hhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 F   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALL 333
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330   
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                            
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                              
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                       
                                                                                                                                                                                                          177-MSE|                                                                                                                                                       
                                                                                                                                                                                                               182-MSE                                                                                                                                                   


Chain G from PDB  Type:PROTEIN  Length:335
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:335
                                                                                                                                                                                                                                                                                                                                                                     332   
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |   
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL---   -
               SCOP domains d1s20g_ G: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains -1s20G01 G:2-64,G:317-335  [code=1.10.1530.10, no name defined] 1s20G02 G:65-164,G:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20G03 G:181-220                       -1s20G02 G:65-164,G:222-270                       ----------------------------------------------1s20G01             CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eehhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeeee...hhhhhhhhhhhh..eeeeee....................eeeee.....eeeee.....hhhhhhhhhhhh.......ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhh...hhhhhhhhh...eeeeeeeeee......hhhhhhhhhhhhhhhhhh..............hhhhhhhhhhh...ee.hhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 G   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLEH 335
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330     
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                              
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                                
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                         
                                                                                                                                                                                                          177-MSE|                                                                                                                                                         
                                                                                                                                                                                                               182-MSE                                                                                                                                                     


Chain H from PDB  Type:PROTEIN  Length:334
 aligned with DLGD_ECOLI | P37672 from UniProtKB/Swiss-Prot  Length:332

    Alignment length:334
                                                                                                                                                                                                                                                                                                                                                                     332  
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330 |  
           DLGD_ECOLI     1 MKVTFEQLKAAFNRVLISRGVDSETADACAEMFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKMMDRAIELAADHGIGLVALRNANHWMRGGSYGWQAAEKGYIGICWTNSIAVMPPWGAKECRIGTNPLIVAIPSTPITMVDMSMSMFSYGMLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPMGYWKGSGMSIVLDMIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRIMDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQAL--   -
               SCOP domains d1s20h_ H: 2,3-diketogulonate oxidoreductase (YiaK)                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains -1s20H01 H:2-64,H:317-334  [code=1.10.1530.10, no name defined] 1s20H02 H:65-164,H:222-270 Hypothetical oxidoreductase yiak; domain 2                               ----------------1s20H03 H:181-220                       -1s20H02 H:65-164,H:222-270                       ----------------------------------------------1s20H01            CATH domains
           Pfam domains (1) Ldh_2-1s20H01 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (1)
           Pfam domains (2) Ldh_2-1s20H02 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (2)
           Pfam domains (3) Ldh_2-1s20H03 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (3)
           Pfam domains (4) Ldh_2-1s20H04 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (4)
           Pfam domains (5) Ldh_2-1s20H05 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (5)
           Pfam domains (6) Ldh_2-1s20H06 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (6)
           Pfam domains (7) Ldh_2-1s20H07 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (7)
           Pfam domains (8) Ldh_2-1s20H08 H:1-332                                                                                                                                                                                                                                                                                                                       -- Pfam domains (8)
         Sec.struct. author .eehhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh........hhhhhhhhhhh.........eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhheeeeeeeee....hhhhhhhhhhh..eeeeeee....................eeeee.....eeeee.....hhhhhhhhhhhh.......ee.....ee.hhhhhhhhh......hhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.....eeeeeeeee.....hhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhh.ee.hhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1s20 H   1 mKVTFEQLKAAFNRVLISRGVDSETADACAEmFARTTESGVYSHGVNRFPRFIQQLENGDIIPDAQPKRITSLGAIEQWDAQRSIGNLTAKKmmDRAIELAADHGIGLVALRNANHWmRGGSYGWQAAEKGYIGICWTNSIAVmPPWGAKECRIGTNPLIVAIPSTPITmVDmSmSmFSYGmLEVNRLAGRQLPVDGGFDDEGNLTKEPGVIEKNRRILPmGYWKGSGmSIVLDmIATLLSDGASVAEVTQDNSDEYGISQIFIAIEVDKLIDGPTRDAKLQRImDYVTSAERADENQAIRLPGHEFTTLLAENRRNGITVDDSVWAKIQALLE 334
                            |       10        20        30 |      40        50        60        70        80        90  ||   100       110       120       130       140   |   150       160       170  | | |180 |     190       200       210       220|      230    |  240       250       260       270       280    |  290       300       310       320       330    
                            1-MSE                         32-MSE                                                       93-MSE                  118-MSE                   144-MSE                   170-MSE| |    |                                    221-MSE 229-MSE |                                               285-MSE                                             
                                                                                                                        94-MSE                                                                        173-MSE    |                                                  235-MSE                                                                                               
                                                                                                                                                                                                        175-MSE  |                                                                                                                                                        
                                                                                                                                                                                                          177-MSE|                                                                                                                                                        
                                                                                                                                                                                                               182-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 8)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (3, 24)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 2-Layer Sandwich (8480)
(-)
Topology: Ribosomal Protein S8; Chain: A, domain 1 (139)
(-)
Homologous Superfamily: Hypothetical oxidoreductase yiak; domain 2 (3)
(-)
Escherichia coli. Organism_taxid: 562. (2)
1a1s20A02A:65-164,A:222-270
1b1s20B02B:65-164,B:222-270
1c1s20C02C:65-164,C:222-270
1d1s20D02D:65-164,D:222-270
1e1s20E02E:65-164,E:222-270
1f1s20F02F:65-164,F:222-270
1g1s20G02G:65-164,G:222-270
1h1s20H02H:65-164,H:222-270
(-)
Topology: Wheat Germ Agglutinin (Isolectin 2); domain 1 (140)
(-)
Homologous Superfamily: Hypothetical oxidoreductase yiak; domain 3 (2)
(-)
Escherichia coli. Organism_taxid: 562. (2)
2a1s20A03A:181-220
2b1s20B03B:181-220
2c1s20C03C:181-220
2d1s20D03D:181-220
2e1s20E03E:181-220
2f1s20F03F:181-220
2g1s20G03G:181-220
2h1s20H03H:181-220
(-)
Class: Mainly Alpha (13335)
(-)
Architecture: Orthogonal Bundle (10391)
(-)
Topology: Hypothetical Oxidoreductase Yiak; Chain: A, domain 1 (3)
(-)
Homologous Superfamily: [code=1.10.1530.10, no name defined] (3)
(-)
Escherichia coli. Organism_taxid: 562. (2)
3a1s20G01G:2-64,G:317-335
3b1s20A01A:2-64,A:317-334
3c1s20B01B:2-64,B:317-334
3d1s20C01C:2-64,C:317-334
3e1s20D01D:2-64,D:317-334
3f1s20E01E:2-64,E:317-334
3g1s20H01H:2-64,H:317-334
3h1s20F01F:2-64,F:317-333

(-) Pfam Domains  (1, 8)

Asymmetric Unit
(-)
Clan: no clan defined [family: Ldh_2] (7)

(-) Gene Ontology  (7, 7)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H   (DLGD_ECOLI | P37672)
molecular function
    GO:0047559    3-dehydro-L-gulonate 2-dehydrogenase activity    Catalysis of the reaction: 3-dehydro-L-gulonate + NAD(P)+ = (4R,5S)-4,5,6-trihydroxy-2,3-dioxohexanoate + NAD(P)H + H+.
    GO:0070403    NAD+ binding    Interacting selectively and non-covalently with the oxidized form, NAD, of nicotinamide adenine dinucleotide, a coenzyme involved in many redox and biosynthetic reactions.
    GO:0016491    oxidoreductase activity    Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
    GO:0016616    oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor    Catalysis of an oxidation-reduction (redox) reaction in which a CH-OH group acts as a hydrogen or electron donor and reduces NAD+ or NADP.
biological process
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0055114    oxidation-reduction process    A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        DLGD_ECOLI | P37672: 1nxu

(-) Related Entries Specified in the PDB File

1nxu THE SAME PROTEIN WITHOUT NAD AND TARTRATE
er82