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(-) Description

Title :  CRYSTAL STRUCTURE OF TM1457
 
Authors :  D. H. Shin, Y. Lou, J. Jancarik, H. Yokota, R. Kim, S. -H. Kim, Berkeley Structural Genomics Center (Bsgc)
Date :  05 Jan 04  (Deposition) - 07 Dec 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,D  (1x)
Biol. Unit 2:  B,C  (1x)
Keywords :  Crystal, Structural Genomics, Hypothetical Protein, Psi, Berkeley Structural Genomics Center, Bsgc, Protein Structure Initiative, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. H. Shin, Y. Lou, J. Jancarik, H. Yokota, R. Kim, S. H. Kim
Crystal Structure Of Tm1457 From Thermotoga Maritima.
J. Struct. Biol. V. 152 113 2005
PubMed-ID: 16242963  |  Reference-DOI: 10.1016/J.JSB.2005.08.008
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN TM1457
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: E. COLI STRAIN B834(DE3)/PSJS1244
    Expression System Vector Type: TOPO VECTOR
    Organism Scientific: THERMOTOGA MARITIMA
    Organism Taxid: 2336

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): A  D
Biological Unit 2 (1x):  BC 

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 4)

Asymmetric Unit (1, 4)
No.NameCountTypeFull Name
1ACT4Ligand/IonACETATE ION
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:32 , VAL A:66 , HOH A:1016 , HIS D:332 , VAL D:333 , PHE D:336 , VAL D:366BINDING SITE FOR RESIDUE ACT A 500
2AC2SOFTWAREHIS B:132 , VAL B:133 , HOH B:1024 , HIS C:232 , VAL C:266BINDING SITE FOR RESIDUE ACT B 501
3AC3SOFTWARELYS A:65 , ALA A:68 , ARG A:72 , HOH A:1029 , HOH A:1279BINDING SITE FOR RESIDUE ACT A 502
4AC4SOFTWARELYS B:165 , ALA B:168 , ARG B:172 , HOH B:1051 , HOH B:1341BINDING SITE FOR RESIDUE ACT B 503

(-) SS Bonds  (2, 2)

Asymmetric Unit
No.Residues
1A:62 -D:362
2B:162 -C:262

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1S12)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1S12)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1S12)

(-) Exons   (0, 0)

(no "Exon" information available for 1S12)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:94
 aligned with Q9X1G8_THEMA | Q9X1G8 from UniProtKB/TrEMBL  Length:94

    Alignment length:94
                                    10        20        30        40        50        60        70        80        90    
         Q9X1G8_THEMA     1 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS  94
               SCOP domains d1s12a_ A: Hypothetical protein TM1457                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1s12 A   1 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS  94
                                    10        20        30        40        50        60        70        80        90    


Chain B from PDB  Type:PROTEIN  Length:94
 aligned with Q9X1G8_THEMA | Q9X1G8 from UniProtKB/TrEMBL  Length:94

    Alignment length:94
                                    10        20        30        40        50        60        70        80        90    
         Q9X1G8_THEMA     1 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS  94
               SCOP domains d1s12b_ B: Hypothetical protein TM1457                                                         SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeee..... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------- Transcript
                 1s12 B 101 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVIDNGS 194
                                   110       120       130       140       150       160       170       180       190    


Chain C from PDB  Type:PROTEIN  Length:91
 aligned with Q9X1G8_THEMA | Q9X1G8 from UniProtKB/TrEMBL  Length:94

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
         Q9X1G8_THEMA     1 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVID  91
               SCOP domains d1s12c_ C: Hypothetical protein TM1457                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1s12 C 201 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVID 291
                                   210       220       230       240       250       260       270       280       290 


Chain D from PDB  Type:PROTEIN  Length:91
 aligned with Q9X1G8_THEMA | Q9X1G8 from UniProtKB/TrEMBL  Length:94

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
         Q9X1G8_THEMA     1 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVID  91
               SCOP domains d1s12d_ D: Hypothetical protein TM1457                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) DUF464-1s12D01 D:301-387                                                               ---- Pfam domains (1)
           Pfam domains (2) DUF464-1s12D02 D:301-387                                                               ---- Pfam domains (2)
           Pfam domains (3) DUF464-1s12D03 D:301-387                                                               ---- Pfam domains (3)
           Pfam domains (4) DUF464-1s12D04 D:301-387                                                               ---- Pfam domains (4)
         Sec.struct. author .eeeee...eeeee....hhhhhhhhhhhhhhhhhhhhhh..eeeeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhh...eeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 1s12 D 301 MIKVTVTNSFFEVTGHAPDKTLCASVSLLTQHVANFLKAEKKAKIKKESGYLKVKFEELENCEVKVLAAMVRSLKELEQKFPSQIRVEVID 391
                                   310       320       330       340       350       360       370       380       390
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1S12)

(-) Pfam Domains  (1, 4)

Asymmetric Unit
(-)
Clan: no clan defined [family: DUF464] (1)
(-)
Family: DUF464 (1)
(-)
Thermotoga maritima (1)
1aDUF464-1s12D01D:301-387
1bDUF464-1s12D02D:301-387
1cDUF464-1s12D03D:301-387
1dDUF464-1s12D04D:301-387

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1S12)

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