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(-) Description

Title :  CRYSTAL STRUCTURE OF NEISSERIA MENINGITIDIS PROTEIN NMB0706, PFAM DUF152
 
Authors :  S. Eswaramoorthy, S. Swaminathan, S. K. Burley, New York Sgx Resear For Structural Genomics (Nysgxrc)
Date :  13 Dec 03  (Deposition) - 17 Aug 04  (Release) - 16 Nov 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.53
Chains :  Asym./Biol. Unit :  A
Keywords :  Alpha-Beta-Beta-Alpha Structure, Structural Genomics, Psi, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Eswaramoorthy, S. Swaminathan
Crystal Structure Of A Hypothetical Protein, Nmb0706
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - CONSERVED HYPOTHETICAL PROTEIN NMB0706
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: NEISSERIA MENINGITIDIS
    Organism Taxid: 487

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:52 , HIS A:82 , GLY A:196 , ILE A:197 , GLY A:198 , ARG A:247 , HOH A:556 , HOH A:573 , HOH A:590BINDING SITE FOR RESIDUE SO4 A 500

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RV9)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RV9)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RV9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1RV9)

(-) Exons   (0, 0)

(no "Exon" information available for 1RV9)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:242
 aligned with Q9K0A8_NEIMB | Q9K0A8 from UniProtKB/TrEMBL  Length:259

    Alignment length:242
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254  
         Q9K0A8_NEIMB    15 KNFLTADWPAPANVKTLITTRNGGVSQGAYQSLNLGTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTVVVNAAEALGGTPDADASVDDTGKVACAVMTADCLPVLFCDRAGTAVAAAHAGWRGLAGGVLQNTIAAMKVPPVEMMAYLGPAISADAFEVGQDVFDAFCTPMPEAATAFEGIGSGKFLADLYALARLILKREGVGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDG 256
               SCOP domains d1rv9a_ A: Hypothetical protein NMB0706                                                                                                                                                                                                            SCOP domains
               CATH domains 1rv9A00 A:15-256 CNF1/YfiH-like putative cysteine hydrolases                                                                                                                                                                                       CATH domains
               Pfam domains -----------------Cu-oxidase_4-1rv9A01 A:32-254                                                                                                                                                                                                  -- Pfam domains
         Sec.struct. author ..ee.........eeeeee.......hhhhh..........hhhhhhhhhhhhhhhhh..ee.........eee.hhh........eeee.....eeeeee...eeeeeee.....eeeeeehhhhhhhhhhhhhhhhhh.hhh.eeeee....hhhh.eehhhhhhhhhh.hhhhhh.eeeee..eeeehhhhhhhhhhhhhh..eeee.............hhhhhh....eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rv9 A  15 KNFLTADWPAPANVKTLITTRNGGVSQGAYQSLNLGTHVGDNPEAVRRNREIVQQQVGLPVAYLNQIHSTVVVNAAEALGGTPDADASVDDTGKVACAVMTADCLPVLFCDRAGTAVAAAHAGWRGLAGGVLQNTIAAMKVPPVEMMAYLGPAISADAFEVGQDVFDAFCTPMPEAATAFEGIGSGKFLADLYALARLILKREGVGGVYGGTHCTVLERDTFFSYRRDGATGRMASLIWLDG 256
                                    24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)

(-) CATH Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: Cu-oxidase_4] (6)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1RV9)

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  1rv9
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 Related Entries

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