1RPN - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF GDP-D-MANNOSE 4,6-DEHYDRATASE IN COMPLEXES WITH GDP AND NADPH

Authors :   N. A. Webb, A. M. Mulichak, J. S. Lam, H. L. Rocchetta, R. M. Garavito

Date :   03 Dec 03 (Deposition) - 24 Feb 04 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.15

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)
Biol. Unit 5: A,B,C,D  (1x)

Keywords :   Short-Chain Dehydrogenase/Reductase, Rossmann Fold, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. A. Webb, A. M. Mulichak, J. S. Lam, H. L. Rocchetta, R. M. Garavito
Crystal Structure Of A Tetrameric Gdp-D-Mannose 4, 6-Dehydratase From A Bacterial Gdp-D-Rhamnose Biosyntheti Pathway.
Protein Sci. V. 13 529 2004
PubMed-ID: 14739333 | Reference-DOI: 10.1110/PS.03393904

Molecule 1 - GDP-MANNOSE 4,6-DEHYDRATASE
	Chains	:	A, B, C, D
	EC Number	:	4.2.1.47
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PQE30
	Expression System Strain	:	M15
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	GCA, PA5453
	Organism Scientific	:	PSEUDOMONAS AERUGINOSA
	Organism Taxid	:	287
	Synonym	:	GDP-D-MANNOSE DEHYDRATASE

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D
Biological Unit 5 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NDP	1	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Biological Unit 5 (2, 8)

No.	Name	Count	Type	Full Name
1	GDP	4	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE
2	NDP	4	Ligand/Ion	NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDEPHOSPHATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:9 , THR A:11 , GLY A:12 , GLN A:13 , ASP A:14 , ALA A:34 , ARG A:36 , ASP A:59 , MET A:60 , LEU A:81 , ALA A:82 , ALA A:83 , SER A:85 , VAL A:100 , ALA A:124 , SER A:125 , THR A:126 , TYR A:150 , LYS A:154 , LEU A:177 , ASN A:179 , HIS A:180 , ARG A:185 , HOH A:1604 , HOH A:1609 , HOH A:1613 , HOH A:1617 , HOH A:1618 , HOH A:1620 , HOH A:1622 , HOH A:1637 , HOH A:1641 , HOH A:1650 , HOH A:1660 , HOH A:1673 , HOH A:1698 , HOH A:1723 , ARG D:35 , ARG D:36 , SER D:37	BINDING SITE FOR RESIDUE NDP A 1501
2	AC2	SOFTWARE	GLY B:9 , THR B:11 , GLY B:12 , GLN B:13 , ASP B:14 , ALA B:34 , ARG B:36 , ASP B:59 , MET B:60 , LEU B:81 , ALA B:82 , ALA B:83 , SER B:85 , VAL B:100 , ALA B:124 , SER B:125 , THR B:126 , TYR B:150 , LYS B:154 , LEU B:177 , ASN B:179 , HIS B:180 , ARG B:185 , HOH B:1609 , HOH B:1611 , HOH B:1615 , HOH B:1620 , HOH B:1622 , HOH B:1624 , HOH B:1630 , HOH B:1640 , HOH B:1641 , HOH B:1654 , HOH B:1663 , HOH B:1687 , HOH B:1694 , ARG C:35 , ARG C:36 , SER C:37	BINDING SITE FOR RESIDUE NDP B 1502
3	AC3	SOFTWARE	ARG B:35 , ARG B:36 , SER B:37 , GLY C:9 , THR C:11 , GLY C:12 , GLN C:13 , ASP C:14 , ALA C:34 , ARG C:36 , ASP C:59 , MET C:60 , LEU C:81 , ALA C:82 , ALA C:83 , SER C:85 , VAL C:100 , ALA C:124 , SER C:125 , THR C:126 , TYR C:150 , LYS C:154 , LEU C:177 , ASN C:179 , HIS C:180 , ARG C:185 , HOH C:1613 , HOH C:1615 , HOH C:1622 , HOH C:1623 , HOH C:1624 , HOH C:1632 , HOH C:1634 , HOH C:1643 , HOH C:1644 , HOH C:1648 , HOH C:1664 , HOH C:1696 , HOH C:1702 , HOH C:1717 , HOH C:1729	BINDING SITE FOR RESIDUE NDP C 1503
4	AC4	SOFTWARE	ARG A:35 , ARG A:36 , SER A:37 , HOH A:1682 , GLY D:9 , THR D:11 , GLY D:12 , GLN D:13 , ASP D:14 , ALA D:34 , ARG D:36 , ASP D:59 , MET D:60 , LEU D:81 , ALA D:82 , ALA D:83 , SER D:85 , VAL D:100 , ALA D:124 , SER D:125 , THR D:126 , TYR D:150 , LYS D:154 , LEU D:177 , ASN D:179 , HIS D:180 , ARG D:185 , HOH D:1614 , HOH D:1617 , HOH D:1619 , HOH D:1624 , HOH D:1626 , HOH D:1635 , HOH D:1637 , HOH D:1647 , HOH D:1681 , HOH D:1684 , HOH D:1694 , HOH D:1717	BINDING SITE FOR RESIDUE NDP D 1504
5	AC5	SOFTWARE	PHE A:86 , VAL A:87 , GLU A:128 , ASN A:179 , GLU A:188 , PHE A:189 , VAL A:190 , LYS A:193 , LEU A:211 , GLY A:212 , ASN A:213 , ALA A:216 , ARG A:218 , VAL A:252 , PHE A:277 , ARG A:279 , GLU A:282 , VAL A:283 , HOH A:1615 , HOH A:1616 , HOH A:1633 , HOH A:1638 , HOH A:1670 , HOH A:1679 , HOH A:1723	BINDING SITE FOR RESIDUE GDP A 1601
6	AC6	SOFTWARE	PHE B:86 , VAL B:87 , GLU B:128 , ASN B:179 , GLU B:188 , PHE B:189 , VAL B:190 , LYS B:193 , LEU B:211 , GLY B:212 , ASN B:213 , ALA B:216 , ARG B:218 , VAL B:252 , PHE B:277 , ARG B:279 , GLU B:282 , HOH B:1608 , HOH B:1635 , HOH B:1643 , HOH B:1647 , HOH B:1657 , HOH B:1664	BINDING SITE FOR RESIDUE GDP B 1602
7	AC7	SOFTWARE	PHE C:86 , VAL C:87 , GLU C:128 , ASN C:179 , GLU C:188 , PHE C:189 , VAL C:190 , LYS C:193 , LEU C:211 , GLY C:212 , ASN C:213 , ALA C:216 , ARG C:218 , VAL C:252 , PHE C:277 , ARG C:279 , GLU C:282 , HOH C:1608 , HOH C:1614 , HOH C:1635 , HOH C:1640 , HOH C:1646 , HOH C:1693	BINDING SITE FOR RESIDUE GDP C 1603
8	AC8	SOFTWARE	PHE D:86 , GLU D:128 , ASN D:179 , GLU D:188 , PHE D:189 , VAL D:190 , LYS D:193 , LEU D:211 , GLY D:212 , ASN D:213 , ALA D:216 , ARG D:218 , VAL D:252 , PHE D:277 , ARG D:279 , GLU D:282 , HOH D:1611 , HOH D:1612 , HOH D:1652 , HOH D:1655 , HOH D:1678 , HOH D:1679	BINDING SITE FOR RESIDUE GDP D 1604

(no "SS Bond" information available for 1RPN)

(no "Cis Peptide Bond" information available for 1RPN)

(no "SAP(SNP)/Variant" information available for 1RPN)

(no "PROSITE Motif" information available for 1RPN)

(no "Exon" information available for 1RPN)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:321
 aligned with GM4D_PSEAE | Q51366 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:321
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322 
           GM4D_PSEAE     3 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
               SCOP domains d1rpna_ A: GDP-mannose 4,6-dehydratase                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1rpnA01 A:3-185,A:220-248,A:286-302 NAD(P)-binding Rossmann-like Domain                                                                                                                1rpnA02                           1rpnA01                      1rpnA02 A:186-219,A:249-285,A:303-3231rpnA01          1rpnA02               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee.......hhhhhhh.hhh.eeeee....hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....eee.eehhhhhhhhhhhhhh.....eee....eeehhhhhhhhhhh...hhhh.eee.hhhh...........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rpn A   3 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Chain B from PDB  Type:PROTEIN  Length:321
 aligned with GM4D_PSEAE | Q51366 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:321
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322 
           GM4D_PSEAE     3 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
               SCOP domains d1rpnb_ B: GDP-mannose 4,6-dehydratase                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 1rpnB01 B:3-185,B:220-248,B:286-302 NAD(P)-binding Rossmann-like Domain                                                                                                                1rpnB02                           1rpnB01                      1rpnB02 B:186-219,B:249-285,B:303-3231rpnB01          1rpnB02               CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...hhhhhhhhhhhhhh..eeeeee.......hhhhhhh.hhh.eeeee....hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....eee.eehhhhhhhhhhhhhh.....eee....eeehhhhhhhhhhh...hhhh.eee.hhhh...........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rpn B   3 RSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222       232       242       252       262       272       282       292       302       312       322

Chain C from PDB  Type:PROTEIN  Length:322
 aligned with GM4D_PSEAE | Q51366 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
           GM4D_PSEAE     2 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
               SCOP domains d1rpnc_ C: GDP-mannose 4,6-dehydratase                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1rpnC01 C:2-185,C:220-248,C:286-302 NAD(P)-binding Rossmann-like Domain                                                                                                                 1rpnC02                           1rpnC01                      1rpnC02 C:186-219,C:249-285,C:303-3231rpnC01          1rpnC02               CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee.......hhhhhhh.hhh.eeeee....hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....eee.eehhhhhhhhhhhhhh.....eee....eeehhhhhhhhhhh...hhhh.eee.hhhh...........hhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rpn C   2 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Chain D from PDB  Type:PROTEIN  Length:322
 aligned with GM4D_PSEAE | Q51366 from UniProtKB/Swiss-Prot  Length:323

    Alignment length:322
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321  
           GM4D_PSEAE     2 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
               SCOP domains d1rpnd_ D: GDP-mannose 4,6-dehydratase                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1rpnD01 D:2-185,D:220-248,D:286-302 NAD(P)-binding Rossmann-like Domain                                                                                                                 1rpnD02                           1rpnD01                      1rpnD02 D:186-219,D:249-285,D:303-3231rpnD01          1rpnD02               CATH domains
           Pfam domains (1) ---Epimerase-1rpnD01 D:5-245                                                                                                                                                                                                                        ------------------------------------------------------------------------------ Pfam domains (1)
           Pfam domains (2) ---Epimerase-1rpnD02 D:5-245                                                                                                                                                                                                                        ------------------------------------------------------------------------------ Pfam domains (2)
           Pfam domains (3) ---Epimerase-1rpnD03 D:5-245                                                                                                                                                                                                                        ------------------------------------------------------------------------------ Pfam domains (3)
           Pfam domains (4) ---Epimerase-1rpnD04 D:5-245                                                                                                                                                                                                                        ------------------------------------------------------------------------------ Pfam domains (4)
         Sec.struct. author ..eeeee...hhhhhhhhhhhhhh..eeeeee.......hhhhhhh.hhh.eeeee....hhhhhhhhhhhhh..eeee.....hhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...eeeeeee.hhhh................hhhhhhhhhhhhhhhhhhhhhh..eeeeee..ee.......hhhhhhhhhhhhhhh.....eee.....eee.eehhhhhhhhhhhhhh.....eee....eeehhhhhhhhhhh...hhhh.eee.hhhh...........hhhhhhh.......hhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rpn D   2 TRSALVTGITGQDGAYLAKLLLEKGYRVHGLVARRSSDTRWRLRELGIEGDIQYEDGDMADACSVQRAVIKAQPQEVYNLAAQSFVGASWNQPVTTGVVDGLGVTHLLEAIRQFSPETRFYQASTSEMFGLIQAERQDENTPFYPRSPYGVAKLYGHWITVNYRESFGLHASSGILFNHESPLRGIEFVTRKVTDAVARIKLGKQQELRLGNVDAKRDWGFAGDYVEAMWLMLQQDKADDYVVATGVTTTVRDMCQIAFEHVGLDYRDFLKIDPAFFRPAEVDVLLGNPAKAQRVLGWKPRTSLDELIRMMVEADLRRVSRE 323
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: NAD(P)-binding Rossmann-fold domains (1604)

Superfamily: NAD(P)-binding Rossmann-fold domains (1604)

Family: Tyrosine-dependent oxidoreductases (503)

Protein domain: GDP-mannose 4,6-dehydratase (5)

Pseudomonas aeruginosa [TaxId: 287] (1)

1a	d1rpna_	A:
1b	d1rpnb_	B:
1c	d1rpnc_	C:
1d	d1rpnd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: NAD(P)-binding Rossmann-like Domain (1244)

Pseudomonas aeruginosa. Organism_taxid: 287. (5)

1a	1rpnA01	A:3-185,A:220-248,A:286-302
1b	1rpnB01	B:3-185,B:220-248,B:286-302
1c	1rpnC01	C:2-185,C:220-248,C:286-302
1d	1rpnD01	D:2-185,D:220-248,D:286-302

Architecture: Alpha-Beta Complex (3881)

Topology: UDP-galactose 4-epimerase; domain 1 (99)

Homologous Superfamily: UDP-galactose 4-epimerase, domain 1 (99)

Pseudomonas aeruginosa. Organism_taxid: 287. (1)

2a	1rpnA02	A:186-219,A:249-285,A:303-323
2b	1rpnB02	B:186-219,B:249-285,B:303-323
2c	1rpnC02	C:186-219,C:249-285,C:303-323
2d	1rpnD02	D:186-219,D:249-285,D:303-323

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: NADP_Rossmann (1239)

Family: Epimerase (42)

Pseudomonas aeruginosa (2)

1a	Epimerase-1rpnD01	D:5-245
1b	Epimerase-1rpnD02	D:5-245
1c	Epimerase-1rpnD03	D:5-245
1d	Epimerase-1rpnD04	D:5-245

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (GM4D_PSEAE | Q51366)

molecular function
	GO:0008446	GDP-mannose 4,6-dehydratase activity	Catalysis of the reaction: GDP-alpha-D-mannose = GDP-4-dehydro-6-deoxy-alpha-D-mannose + H(2)O.
	GO:0070401	NADP+ binding	Interacting selectively and non-covalently with the oxidized form, NADP+, of nicotinamide-adenine dinucleotide phosphate, a coenzyme involved in many redox and biosynthetic reactions.
	GO:0016829	lyase activity	Catalysis of the cleavage of C-C, C-O, C-N and other bonds by other means than by hydrolysis or oxidation, or conversely adding a group to a double bond. They differ from other enzymes in that two substrates are involved in one reaction direction, but only one in the other direction. When acting on the single substrate, a molecule is eliminated and this generates either a new double bond or a new ring.
biological process
	GO:0019673	GDP-mannose metabolic process	The chemical reactions and pathways involving GDP-mannose, a substance composed of mannose in glycosidic linkage with guanosine diphosphate.
	GO:0009103	lipopolysaccharide biosynthetic process	The chemical reactions and pathways resulting in the formation of lipopolysaccharides, any of a group of related, structurally complex components of the outer membrane of Gram-negative bacteria.

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Description

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Ligands, Modified Residues, Ions (2, 8)

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