1RPJ - JenaLib

Title :   CRYSTAL STRUCTURE OF D-ALLOSE BINDING PROTEIN FROM ESCHERICHIA COLI

Authors :   B. Chaudhuri, T. A. Jones, S. L. Mowbray

Date :   04 Feb 99 (Deposition) - 16 Feb 99 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Periplasmic Sugar Receptor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. N. Chaudhuri, J. Ko, C. Park, T. A. Jones, S. L. Mowbray
Structure Of D-Allose Binding Protein From Escherichia Coli Bound To D-Allose At 1. 8 A Resolution.
J. Mol. Biol. V. 286 1519 1999
PubMed-ID: 10064713 | Reference-DOI: 10.1006/JMBI.1999.2571
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 3)

Sites (4, 4)

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:1 , ASN A:59 , HOH A:499 , HOH A:500 , HOH A:501 , HOH A:502	BINDING SITE FOR RESIDUE ZN A 289
2	AC2	SOFTWARE	GLN A:171 , LYS A:179 , VAL A:183 , ASN A:186 , HOH A:423 , HOH A:452	BINDING SITE FOR RESIDUE SO4 A 290
3	AC3	SOFTWARE	LYS A:9 , ASN A:13 , PHE A:15 , TRP A:16 , GLU A:42 , ASP A:91 , GLU A:92 , SER A:147 , ARG A:151 , TRP A:175 , ASN A:201 , ASP A:227 , GLN A:247	BINDING SITE FOR RESIDUE ALL A 291
4	ALL	AUTHOR	LYS A:9 , SER A:147 , ASP A:91 , ARG A:151 , GLN A:247 , ASP A:227 , ASN A:201 , ASN A:13 , GLU A:42 , TRP A:16 , PHE A:15 , TRP A:175	THE SUGAR BINDING CLEFT IS FORMED AT THE DOMAIN INTERFACE IN THE CLOSED-FORM OF THE PROTEIN.

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:288
 aligned with ALSB_ECOLI | P39265 from UniProtKB/Swiss-Prot  Length:311

    Alignment length:288
                                    33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        
           ALSB_ECOLI    24 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ 311
               SCOP domains d1rpja_ A: D-allose-binding protein                                                                                                                                                                                                                                                              SCOP domains
               CATH domains 1rpjA01 A:1-110,A:250-278  [code=3.40.50.2300, no name defined]                                               1rpjA02 A:111-249,A:279-288  [code=3.40.50.2300, no name defined]                                                                          1rpjA01 A:1-110,A:250-278    1rpjA02    CATH domains
               Pfam domains ---Peripla_BP_4-1rpjA01 A:4-268                                                                                                                                                                                                                                             -------------------- Pfam domains
         Sec.struct. author ...eeeeeee...hhhhhhhhhhhhhhhhh...eeeeee.....hhhhhhhhhhhhh....eeee........hhhhhhhhhh..eeeee.....hhhhhh......eeeee.hhhhhhhhhhhhhhhh....eeeeeee.....hhhhhhhhhhhhhhhh...eeeeeeee....hhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhhhh.......eeeeee..hhhhhhhhh....eeee..hhhhhhhhhhhhhhhhhh..........eeeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1rpj A   1 AAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDIFASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDMDNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVAIIEGKAGNASGEARRNGATEAFKKASQIKLVASQPADWDRIKALDVATNVLQRNPNIKAIYCANDTMAMGVAQAVANAGKTGKVLVVGTDGIPEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEKSGKVIPLDKAPEFKLVDSILVTQ 288
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280

Legend:		→ Mismatch	(orange background)
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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (1, 1)

CATH Domains (1, 2)

Pfam Domains (1, 1)

Gene Ontology (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (ALSB_ECOLI | P39265)

molecular function
	GO:0015145	monosaccharide transmembrane transporter activity	Enables the transfer of a monosaccharide from one side of a membrane to the other.
biological process
	GO:0008643	carbohydrate transport	The directed movement of carbohydrate into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Carbohydrates are any of a group of organic compounds based of the general formula Cx(H2O)y.
	GO:0015749	monosaccharide transport	The directed movement of monosaccharides into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore. Monosaccharides are the simplest carbohydrates; they are polyhydric alcohols containing either an aldehyde or a keto group and between three to ten or more carbon atoms. They form the constitutional repeating units of oligo- and polysaccharides.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).
	GO:0005886	plasma membrane	The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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