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Title :   STRUCTURE OF SSP-19, AN MSP-DOMAIN PROTEIN LIKE FAMILY MEMBER IN CAENORHABDITIS ELEGANS

Authors :   N. Schormann, J. Symersky, M. Carson, M. Luo, G. Lin, S. Li, S. Qiu, A. Arabashi, B. Bunzel, D. Luo, L. Nagy, R. Gray, C. -H. Luan, J. Zhang, S. Lu, L. Delucas, Southeast Collaboratory For Structural Genomics (Secsg)

Date :   02 Dec 03 (Deposition) - 23 Dec 03 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Beta Barrel, Structural Genomics, Psi, Protein Structure Initiative, Southeast Collaboratory For Structural Genomics, Secsg, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   N. Schormann, J. Symersky, M. Luo
Structure Of Sperm-Specific Protein Ssp-19 From Caenorhabditis Elegans.
Acta Crystallogr. , Sect. D V. 60 1840 2004
PubMed-ID: 15388931 | Reference-DOI: 10.1107/S0907444904017846
(for further references see the PDB file header)

Molecule 1 - MSP-DOMAIN PROTEIN LIKE FAMILY MEMBER
	Cell	:	SPERM
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	SSP-19
	Organism Scientific	:	CAENORHABDITIS ELEGANS
	Organism Taxid	:	6239
	Strain	:	BRISTOL N2 (CLONE C55C2)
	Synonym	:	SSP-19; SPERM-SPECIFIC FAMILY, CLASS P SSP-19

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1ROW)

(no "Site" information available for 1ROW)

(no "SS Bond" information available for 1ROW)

Asymmetric Unit

No.	Residues
1	Asp A:6	-	Pro A:7
2	Ala A:46	-	Pro A:47
3	Asp B:6	-	Pro B:7
4	Ala B:46	-	Pro B:47

(no "SAP(SNP)/Variant" information available for 1ROW)

(no "PROSITE Motif" information available for 1ROW)

(no "Exon" information available for 1ROW)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:107
 aligned with SSP19_CAEEL | O01829 from UniProtKB/Swiss-Prot  Length:109

    Alignment length:107
                                    12        22        32        42        52        62        72        82        92       102       
          SSP19_CAEEL     3 LTADPPACTVPAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTIPMSATA 109
               SCOP domains d1rowa_ A: SSP-19                                                                                           SCOP domains
               CATH domains 1rowA00 A:3-109 PapD-like                                                                                   CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee...eeee...eeeeeeeee.....eeeeeee.....eeee..eeee...eeeeeeeee.....eeeeeeeeeee......hhhhhhh.....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1row A   3 LTADPPACTVPAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTIPMSATA 109
                                    12        22        32        42        52        62        72        82        92       102

Chain B from PDB  Type:PROTEIN  Length:107
 aligned with SSP19_CAEEL | O01829 from UniProtKB/Swiss-Prot  Length:109

    Alignment length:107
                                    12        22        32        42        52        62        72        82        92       102       
          SSP19_CAEEL     3 LTADPPACTVPAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTIPMSATA 109
               SCOP domains d1rowb_ B: SSP-19                                                                                           SCOP domains
               CATH domains 1rowB00 B:3-109 PapD-like                                                                                   CATH domains
           Pfam domains (1) Motile_Sperm-1rowB01 B:3-101                                                                       -------- Pfam domains (1)
           Pfam domains (2) Motile_Sperm-1rowB02 B:3-101                                                                       -------- Pfam domains (2)
         Sec.struct. author .eee...eeee...eeeeeeee......eeeeeee.....eeee..eeee....eeeeeeee.....eeeeeeeeeee......hhhhhhhh....eeeeeeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------- Transcript
                 1row B   3 LTADPPACTVPAAGVSSTHKLVNGGAEKIVFKIKSSNNNEYRIAPVFGFVDPSGSKDVVITRTAGAPKEDKLVVHFASAPADATDAQAAFVAVAPAGTVTIPMSATA 109
                                    12        22        32        42        52        62        72        82        92       102

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All beta proteins (24004)

Fold: Immunoglobulin-like beta-sandwich (7299)

Superfamily: PapD-like (47)

Family: MSP-like (8)

Protein domain: SSP-19 (1)

Nematode (Caenorhabditis elegans) [TaxId: 6239] (1)

1a	d1rowa_	A:
1b	d1rowb_	B:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Beta (13760)

Architecture: Sandwich (5577)

Topology: Immunoglobulin-like (3897)

Homologous Superfamily: PapD-like (38)

Caenorhabditis elegans. Organism_taxid: 6239. Strain: bristol n2 (clone c55c2). (1)

1a	1rowA00	A:3-109
1b	1rowB00	B:3-109

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Motile_Sperm] (7)

Family: Motile_Sperm (7)

Caenorhabditis elegans (1)

1a	Motile_Sperm-1rowB01	B:3-101
1b	Motile_Sperm-1rowB02	B:3-101

Asymmetric Unit(hide GO term definitions)

Chain A,B (SSP19_CAEEL | O01829)

molecular function
	GO:0042803		protein homodimerization activity		Interacting selectively and non-covalently with an identical protein to form a homodimer.

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	Cis Peptide Bonds
		Ala A:46 - Pro A:47	[ RasMol ]
		Ala B:46 - Pro B:47	[ RasMol ]
		Asp A:6 - Pro A:7	[ RasMol ]
		Asp B:6 - Pro B:7	[ RasMol ]

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		Biological Unit 2	[ Jena3D ]

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1m1s	STRUCTURE OF WR4, A C. ELEGANS MSP FAMILY MEMBER RELATED ID: C55C2.2 RELATED DB: TARGETDB

Description

Compounds

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Ligands, Modified Residues, Ions (0, 0)

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SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

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