1RJJ - JenaLib

NMR Structure - model 1 (Jmol Viewer)

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Title :   SOLUTION STRUCTURE OF A HOMODIMERIC HYPOTHETICAL PROTEIN, AT5G22580, A STRUCTURAL GENOMICS TARGET FROM ARABIDOPSIS THALIANA

Authors :   G. Cornilescu, C. C. Cornilescu, Q. Zhao, R. O. Frederick, F. C. Peterson, S. Thao, J. L. Markley, Center For Eukaryotic Structural Genomics (Cesg)

Date :   19 Nov 03 (Deposition) - 09 Dec 03 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A,B  (20x)

Keywords :   Beta Barrel, Homodimer, Structural Genomics, Psi, Protein Structure Initiative, Center For Eukaryotic Structural Genomics, Cesg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   G. Cornilescu, C. C. Cornilescu, Q. Zhao, R. O. Frederick, F. C. Peterson, S. Thao, J. L. Markley
Solution Structure Of A Homodimeric Hypothetical Protein, At5G22580, A Structural Genomics Target From Arabidopsis Thaliana.
J. Biomol. Nmr V. 29 387 2004
PubMed-ID: 15213437 | Reference-DOI: 10.1023/B:JNMR.0000032525.70677.16
(for further references see the PDB file header)

Molecule 1 - EXPRESSED PROTEIN
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	ROSETTA(DE3)/PLYSS
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Organism Common	:	THALE CRESS
	Organism Scientific	:	ARABIDOPSIS THALIANA
	Organism Taxid	:	3702


NMR Structure (20x)	:

Summary Information (see also Sequences/Alignments below)

(no "Ligand,Modified Residues,Ions" information available for 1RJJ)

(no "Site" information available for 1RJJ)

(no "SS Bond" information available for 1RJJ)

(no "Cis Peptide Bond" information available for 1RJJ)

(no "SAP(SNP)/Variant" information available for 1RJJ)

NMR Structure (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	S_R_A_B_BARREL	PS51502	Stress-response A/B barrel domain profile.	Y5258_ARATH	6-98	2	A:6-98 B:6-98

(no "Exon" information available for 1RJJ)

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:111
 aligned with Y5258_ARATH | Q9FK81 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:111
                                    10        20        30        40        50        60        70        80        90       100       110 
          Y5258_ARATH     1 MATSGFKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111
               SCOP domains d1rjja_ A: Hypothetical protein AT5G22580                                                                       SCOP domains
               CATH domains 1rjjA00 A:1-111  [code=3.30.70.900, no name defined]                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeeeee.....hhhhhhhhhhhhhhhhhhh.eeeeeee............eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----S_R_A_B_BARREL  PDB: A:6-98 UniProt: 6-98                                                    ------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 1rjj A   1 MATSGFKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111
                                    10        20        30        40        50        60        70        80        90       100       110

Chain B from PDB  Type:PROTEIN  Length:111
 aligned with Y5258_ARATH | Q9FK81 from UniProtKB/Swiss-Prot  Length:111

    Alignment length:111
                                    10        20        30        40        50        60        70        80        90       100       110 
          Y5258_ARATH     1 MATSGFKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111
               SCOP domains d1rjjb_ B: Hypothetical protein AT5G22580                                                                       SCOP domains
               CATH domains 1rjjB00 B:1-111  [code=3.30.70.900, no name defined]                                                            CATH domains
           Pfam domains (1) -----Dabb-1rjjB01 B:6-100                                                                           ----------- Pfam domains (1)
           Pfam domains (2) -----Dabb-1rjjB02 B:6-100                                                                           ----------- Pfam domains (2)
         Sec.struct. author ....eeeeeeeee.....hhhhhhhhhhhhhhhhhhh.eeeeeee............eeeeeee.hhhhhhhhhhhhhhhhhhhhhhhh..eeeeeeeee........... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----S_R_A_B_BARREL  PDB: B:6-98 UniProt: 6-98                                                    ------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 1rjj B   1 MATSGFKHLVVVKFKEDTKVDEILKGLENLVSQIDTVKSFEWGEDKESHDMLRQGFTHAFSMTFENKDGYVAFTSHPLHVEFSAAFTAVIDKIVLLDFPVAAVKSSVVATP 111
                                    10        20        30        40        50        60        70        80        90       100       110

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

NMR Structure

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: Dimeric alpha+beta barrel (122)

Family: Plant stress-induced protein (6)

Protein domain: Hypothetical protein AT5G22580 (1)

Thale cress (Arabidopsis thaliana) [TaxId: 3702] (1)

1a	d1rjja_	A:
1b	d1rjjb_	B:

NMR Structure

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 2-Layer Sandwich (8480)

Topology: Alpha-Beta Plaits (1688)

Homologous Superfamily: [code=3.30.70.900, no name defined] (47)

Thale cress (Arabidopsis thaliana) (4)

1a	1rjjA00	A:1-111
1b	1rjjB00	B:1-111

NMR Structure

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Dim_A_B_barrel (36)

Family: Dabb (5)

Arabidopsis thaliana (Mouse-ear cress) (3)

1a	Dabb-1rjjB01	B:6-100
1b	Dabb-1rjjB02	B:6-100

NMR Structure(hide GO term definitions)

Chain A,B (Y5258_ARATH | Q9FK81)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
biological process
	GO:0008150	biological_process	Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
	GO:0009507	chloroplast	A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma.

NMR Structure
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8972
1iuj
1lq9	RELATED ID: GO.22997 RELATED DB: TARGETDB
1q53

Description

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