Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
(-)Biological Unit 3
(-)Biological Unit 4
collapse expand < >
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)
Image Biological Unit 3
Biological Unit 3  (Jmol Viewer)
Image Biological Unit 4
Biological Unit 4  (Jmol Viewer)

(-) Description

Title :  CRYSTAL STRUCTURE OF EDA-A1
 
Authors :  S. G. Hymowitz, D. M. Compaan, M. Yan, H. Ackerly, V. M. Dixit, M. A. Staro A. M. De Vos
Date :  18 Nov 03  (Deposition) - 09 Dec 03  (Release) - 19 Oct 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B,D,E,F,G,H,I,J,K,L,M
Biol. Unit 1:  A,B,D  (1x)
Biol. Unit 2:  E,F,G  (1x)
Biol. Unit 3:  H,I,J  (1x)
Biol. Unit 4:  K,L,M  (1x)
Keywords :  Eda, Tnf, Beta-Bulge, Morphogen, Hormone-Growth Factor Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  S. G. Hymowitz, D. M. Compaan, M. Yan, H. J. Wallweber, V. M. Dixit, M. A. Starovasnik, A. M. De Vos
The Crystal Structures Of Eda-A1 And Eda-A2: Splice Variant With Distinct Receptor Specificity.
Structure V. 11 1513 2003
PubMed-ID: 14656435  |  Reference-DOI: 10.1016/J.STR.2003.11.009

(-) Compounds

Molecule 1 - ECTODYSPLASIN A
    ChainsA, B, D, E, F, G, H, I, J, K, L, M
    EngineeredYES
    Expression SystemESCHERICHIA COLI BL21(DE3)
    Expression System PlasmidPET15B
    Expression System StrainBL21(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    FragmentTNF DOMAIN OF EDA-A1
    GeneED1, EDA
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymECTODERMAL DYSPLASIA PROTEIN, EDA PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit ABDEFGHIJKLM
Biological Unit 1 (1x)ABD         
Biological Unit 2 (1x)   EFG      
Biological Unit 3 (1x)      HIJ   
Biological Unit 4 (1x)         KLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1RJ7)

(-) Sites  (0, 0)

(no "Site" information available for 1RJ7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RJ7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1RJ7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (51, 612)

Asymmetric Unit (51, 612)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_005187H252LEDA_HUMANDisease (XHED)879255552A/B/D/E/F/G/H/I/J/K/L/MH252L
02UniProtVAR_013485H252YEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MH252Y
03UniProtVAR_011077G255CEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG255C
04UniProtVAR_011078G255DEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG255D
05UniProtVAR_071454A259EEDA_HUMANDisease (STHAGX1)879255611A/B/D/E/F/G/H/I/J/K/L/MA259E
06UniProtVAR_071455I260SEDA_HUMANDisease (STHAGX1)  ---A/B/D/E/F/G/H/I/J/K/L/MI260S
07UniProtVAR_064862L266REDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/ML266R
08UniProtVAR_013486G269VEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG269V
09UniProtVAR_011079W274GEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MW274G
10UniProtVAR_064863W274REDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MW274R
11UniProtVAR_071456R289CEDA_HUMANDisease (STHAGX1)879255551A/B/D/E/F/G/H/I/J/K/L/MR289C
12UniProtVAR_071457R289LEDA_HUMANDisease (STHAGX1)  ---A/B/D/E/F/G/H/I/J/K/L/MR289L
13UniProtVAR_010613G291REDA_HUMANDisease (XHED)397516677A/B/D/E/F/G/H/I/J/K/L/MG291R
14UniProtVAR_010614G291WEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG291W
15UniProtVAR_064864L293PEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/ML293P
16UniProtVAR_064865L296VEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/ML296V
17UniProtVAR_010615D298HEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MD298H
18UniProtVAR_054466D298YEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MD298Y
19UniProtVAR_064866G299DEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG299D
20UniProtVAR_005188G299SEDA_HUMANDisease (XHED)397516679A/B/D/E/F/G/H/I/J/K/L/MG299S
21UniProtVAR_013487F302SEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MF302S
22UniProtVAR_075316Y304HEDA_HUMANUnclassified (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MY304H
23UniProtVAR_054467Q306HEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MQ306H
24UniProtVAR_054468V307GEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MV307G
25UniProtVAR_075317D316EEDA_HUMANUnclassified (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MD316E
26UniProtVAR_067319S319REDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MS319R
27UniProtVAR_054469Y320CEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MY320C
28UniProtVAR_064867V323GEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MV323G
29UniProtVAR_075318C332FEDA_HUMANUnclassified (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MC332F
30UniProtVAR_011080C332YEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MC332Y
31UniProtVAR_071458R334HEDA_HUMANDisease (STHAGX1)142948132A/B/D/E/F/G/H/I/J/K/L/MR334H
32UniProtVAR_064868T338MEDA_HUMANDisease (STHAGX1)132630321A/B/D/E/F/G/H/I/J/K/L/MT338M
33UniProtVAR_054470Y343CEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MY343C
34UniProtVAR_064869C346YEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MC346Y
35UniProtVAR_005189A349TEDA_HUMANDisease (XHED)132630317A/B/D/E/F/G/H/I/J/K/L/MA349T
36UniProtVAR_075319G350DEDA_HUMANUnclassified (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG350D
37UniProtVAR_067250L354PEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/ML354P
38UniProtVAR_005190A356DEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MA356D
39UniProtVAR_064870A356VEDA_HUMANDisease (XHED)876657639A/B/D/E/F/G/H/I/J/K/L/MA356V
40UniProtVAR_005191R357PEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MR357P
41UniProtVAR_054471Q358EEDA_HUMANDisease (XHED)132630320A/B/D/E/F/G/H/I/J/K/L/MQ358E
42UniProtVAR_075320Q358HEDA_HUMANUnclassified (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MQ358H
43UniProtVAR_054472I360NEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MI360N
44UniProtVAR_054473N372DEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MN372D
45UniProtVAR_054474M373IEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MM373I
46UniProtVAR_054475S374REDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MS374R
47UniProtVAR_013488T378MEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MT378M
48UniProtVAR_054476T378PEDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MT378P
49UniProtVAR_071459F379VEDA_HUMANDisease (STHAGX1)  ---A/B/D/E/F/G/H/I/J/K/L/MF379V
50UniProtVAR_064871G381REDA_HUMANDisease (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG381R
51UniProtVAR_075321G381VEDA_HUMANUnclassified (XHED)  ---A/B/D/E/F/G/H/I/J/K/L/MG381V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 1 (51, 153)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_005187H252LEDA_HUMANDisease (XHED)879255552A/B/DH252L
02UniProtVAR_013485H252YEDA_HUMANDisease (XHED)  ---A/B/DH252Y
03UniProtVAR_011077G255CEDA_HUMANDisease (XHED)  ---A/B/DG255C
04UniProtVAR_011078G255DEDA_HUMANDisease (XHED)  ---A/B/DG255D
05UniProtVAR_071454A259EEDA_HUMANDisease (STHAGX1)879255611A/B/DA259E
06UniProtVAR_071455I260SEDA_HUMANDisease (STHAGX1)  ---A/B/DI260S
07UniProtVAR_064862L266REDA_HUMANDisease (XHED)  ---A/B/DL266R
08UniProtVAR_013486G269VEDA_HUMANDisease (XHED)  ---A/B/DG269V
09UniProtVAR_011079W274GEDA_HUMANDisease (XHED)  ---A/B/DW274G
10UniProtVAR_064863W274REDA_HUMANDisease (XHED)  ---A/B/DW274R
11UniProtVAR_071456R289CEDA_HUMANDisease (STHAGX1)879255551A/B/DR289C
12UniProtVAR_071457R289LEDA_HUMANDisease (STHAGX1)  ---A/B/DR289L
13UniProtVAR_010613G291REDA_HUMANDisease (XHED)397516677A/B/DG291R
14UniProtVAR_010614G291WEDA_HUMANDisease (XHED)  ---A/B/DG291W
15UniProtVAR_064864L293PEDA_HUMANDisease (XHED)  ---A/B/DL293P
16UniProtVAR_064865L296VEDA_HUMANDisease (XHED)  ---A/B/DL296V
17UniProtVAR_010615D298HEDA_HUMANDisease (XHED)  ---A/B/DD298H
18UniProtVAR_054466D298YEDA_HUMANDisease (XHED)  ---A/B/DD298Y
19UniProtVAR_064866G299DEDA_HUMANDisease (XHED)  ---A/B/DG299D
20UniProtVAR_005188G299SEDA_HUMANDisease (XHED)397516679A/B/DG299S
21UniProtVAR_013487F302SEDA_HUMANDisease (XHED)  ---A/B/DF302S
22UniProtVAR_075316Y304HEDA_HUMANUnclassified (XHED)  ---A/B/DY304H
23UniProtVAR_054467Q306HEDA_HUMANDisease (XHED)  ---A/B/DQ306H
24UniProtVAR_054468V307GEDA_HUMANDisease (XHED)  ---A/B/DV307G
25UniProtVAR_075317D316EEDA_HUMANUnclassified (XHED)  ---A/B/DD316E
26UniProtVAR_067319S319REDA_HUMANDisease (XHED)  ---A/B/DS319R
27UniProtVAR_054469Y320CEDA_HUMANDisease (XHED)  ---A/B/DY320C
28UniProtVAR_064867V323GEDA_HUMANDisease (XHED)  ---A/B/DV323G
29UniProtVAR_075318C332FEDA_HUMANUnclassified (XHED)  ---A/B/DC332F
30UniProtVAR_011080C332YEDA_HUMANDisease (XHED)  ---A/B/DC332Y
31UniProtVAR_071458R334HEDA_HUMANDisease (STHAGX1)142948132A/B/DR334H
32UniProtVAR_064868T338MEDA_HUMANDisease (STHAGX1)132630321A/B/DT338M
33UniProtVAR_054470Y343CEDA_HUMANDisease (XHED)  ---A/B/DY343C
34UniProtVAR_064869C346YEDA_HUMANDisease (XHED)  ---A/B/DC346Y
35UniProtVAR_005189A349TEDA_HUMANDisease (XHED)132630317A/B/DA349T
36UniProtVAR_075319G350DEDA_HUMANUnclassified (XHED)  ---A/B/DG350D
37UniProtVAR_067250L354PEDA_HUMANDisease (XHED)  ---A/B/DL354P
38UniProtVAR_005190A356DEDA_HUMANDisease (XHED)  ---A/B/DA356D
39UniProtVAR_064870A356VEDA_HUMANDisease (XHED)876657639A/B/DA356V
40UniProtVAR_005191R357PEDA_HUMANDisease (XHED)  ---A/B/DR357P
41UniProtVAR_054471Q358EEDA_HUMANDisease (XHED)132630320A/B/DQ358E
42UniProtVAR_075320Q358HEDA_HUMANUnclassified (XHED)  ---A/B/DQ358H
43UniProtVAR_054472I360NEDA_HUMANDisease (XHED)  ---A/B/DI360N
44UniProtVAR_054473N372DEDA_HUMANDisease (XHED)  ---A/B/DN372D
45UniProtVAR_054474M373IEDA_HUMANDisease (XHED)  ---A/B/DM373I
46UniProtVAR_054475S374REDA_HUMANDisease (XHED)  ---A/B/DS374R
47UniProtVAR_013488T378MEDA_HUMANDisease (XHED)  ---A/B/DT378M
48UniProtVAR_054476T378PEDA_HUMANDisease (XHED)  ---A/B/DT378P
49UniProtVAR_071459F379VEDA_HUMANDisease (STHAGX1)  ---A/B/DF379V
50UniProtVAR_064871G381REDA_HUMANDisease (XHED)  ---A/B/DG381R
51UniProtVAR_075321G381VEDA_HUMANUnclassified (XHED)  ---A/B/DG381V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 2 (51, 153)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_005187H252LEDA_HUMANDisease (XHED)879255552E/F/GH252L
02UniProtVAR_013485H252YEDA_HUMANDisease (XHED)  ---E/F/GH252Y
03UniProtVAR_011077G255CEDA_HUMANDisease (XHED)  ---E/F/GG255C
04UniProtVAR_011078G255DEDA_HUMANDisease (XHED)  ---E/F/GG255D
05UniProtVAR_071454A259EEDA_HUMANDisease (STHAGX1)879255611E/F/GA259E
06UniProtVAR_071455I260SEDA_HUMANDisease (STHAGX1)  ---E/F/GI260S
07UniProtVAR_064862L266REDA_HUMANDisease (XHED)  ---E/F/GL266R
08UniProtVAR_013486G269VEDA_HUMANDisease (XHED)  ---E/F/GG269V
09UniProtVAR_011079W274GEDA_HUMANDisease (XHED)  ---E/F/GW274G
10UniProtVAR_064863W274REDA_HUMANDisease (XHED)  ---E/F/GW274R
11UniProtVAR_071456R289CEDA_HUMANDisease (STHAGX1)879255551E/F/GR289C
12UniProtVAR_071457R289LEDA_HUMANDisease (STHAGX1)  ---E/F/GR289L
13UniProtVAR_010613G291REDA_HUMANDisease (XHED)397516677E/F/GG291R
14UniProtVAR_010614G291WEDA_HUMANDisease (XHED)  ---E/F/GG291W
15UniProtVAR_064864L293PEDA_HUMANDisease (XHED)  ---E/F/GL293P
16UniProtVAR_064865L296VEDA_HUMANDisease (XHED)  ---E/F/GL296V
17UniProtVAR_010615D298HEDA_HUMANDisease (XHED)  ---E/F/GD298H
18UniProtVAR_054466D298YEDA_HUMANDisease (XHED)  ---E/F/GD298Y
19UniProtVAR_064866G299DEDA_HUMANDisease (XHED)  ---E/F/GG299D
20UniProtVAR_005188G299SEDA_HUMANDisease (XHED)397516679E/F/GG299S
21UniProtVAR_013487F302SEDA_HUMANDisease (XHED)  ---E/F/GF302S
22UniProtVAR_075316Y304HEDA_HUMANUnclassified (XHED)  ---E/F/GY304H
23UniProtVAR_054467Q306HEDA_HUMANDisease (XHED)  ---E/F/GQ306H
24UniProtVAR_054468V307GEDA_HUMANDisease (XHED)  ---E/F/GV307G
25UniProtVAR_075317D316EEDA_HUMANUnclassified (XHED)  ---E/F/GD316E
26UniProtVAR_067319S319REDA_HUMANDisease (XHED)  ---E/F/GS319R
27UniProtVAR_054469Y320CEDA_HUMANDisease (XHED)  ---E/F/GY320C
28UniProtVAR_064867V323GEDA_HUMANDisease (XHED)  ---E/F/GV323G
29UniProtVAR_075318C332FEDA_HUMANUnclassified (XHED)  ---E/F/GC332F
30UniProtVAR_011080C332YEDA_HUMANDisease (XHED)  ---E/F/GC332Y
31UniProtVAR_071458R334HEDA_HUMANDisease (STHAGX1)142948132E/F/GR334H
32UniProtVAR_064868T338MEDA_HUMANDisease (STHAGX1)132630321E/F/GT338M
33UniProtVAR_054470Y343CEDA_HUMANDisease (XHED)  ---E/F/GY343C
34UniProtVAR_064869C346YEDA_HUMANDisease (XHED)  ---E/F/GC346Y
35UniProtVAR_005189A349TEDA_HUMANDisease (XHED)132630317E/F/GA349T
36UniProtVAR_075319G350DEDA_HUMANUnclassified (XHED)  ---E/F/GG350D
37UniProtVAR_067250L354PEDA_HUMANDisease (XHED)  ---E/F/GL354P
38UniProtVAR_005190A356DEDA_HUMANDisease (XHED)  ---E/F/GA356D
39UniProtVAR_064870A356VEDA_HUMANDisease (XHED)876657639E/F/GA356V
40UniProtVAR_005191R357PEDA_HUMANDisease (XHED)  ---E/F/GR357P
41UniProtVAR_054471Q358EEDA_HUMANDisease (XHED)132630320E/F/GQ358E
42UniProtVAR_075320Q358HEDA_HUMANUnclassified (XHED)  ---E/F/GQ358H
43UniProtVAR_054472I360NEDA_HUMANDisease (XHED)  ---E/F/GI360N
44UniProtVAR_054473N372DEDA_HUMANDisease (XHED)  ---E/F/GN372D
45UniProtVAR_054474M373IEDA_HUMANDisease (XHED)  ---E/F/GM373I
46UniProtVAR_054475S374REDA_HUMANDisease (XHED)  ---E/F/GS374R
47UniProtVAR_013488T378MEDA_HUMANDisease (XHED)  ---E/F/GT378M
48UniProtVAR_054476T378PEDA_HUMANDisease (XHED)  ---E/F/GT378P
49UniProtVAR_071459F379VEDA_HUMANDisease (STHAGX1)  ---E/F/GF379V
50UniProtVAR_064871G381REDA_HUMANDisease (XHED)  ---E/F/GG381R
51UniProtVAR_075321G381VEDA_HUMANUnclassified (XHED)  ---E/F/GG381V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 3 (51, 153)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_005187H252LEDA_HUMANDisease (XHED)879255552H/I/JH252L
02UniProtVAR_013485H252YEDA_HUMANDisease (XHED)  ---H/I/JH252Y
03UniProtVAR_011077G255CEDA_HUMANDisease (XHED)  ---H/I/JG255C
04UniProtVAR_011078G255DEDA_HUMANDisease (XHED)  ---H/I/JG255D
05UniProtVAR_071454A259EEDA_HUMANDisease (STHAGX1)879255611H/I/JA259E
06UniProtVAR_071455I260SEDA_HUMANDisease (STHAGX1)  ---H/I/JI260S
07UniProtVAR_064862L266REDA_HUMANDisease (XHED)  ---H/I/JL266R
08UniProtVAR_013486G269VEDA_HUMANDisease (XHED)  ---H/I/JG269V
09UniProtVAR_011079W274GEDA_HUMANDisease (XHED)  ---H/I/JW274G
10UniProtVAR_064863W274REDA_HUMANDisease (XHED)  ---H/I/JW274R
11UniProtVAR_071456R289CEDA_HUMANDisease (STHAGX1)879255551H/I/JR289C
12UniProtVAR_071457R289LEDA_HUMANDisease (STHAGX1)  ---H/I/JR289L
13UniProtVAR_010613G291REDA_HUMANDisease (XHED)397516677H/I/JG291R
14UniProtVAR_010614G291WEDA_HUMANDisease (XHED)  ---H/I/JG291W
15UniProtVAR_064864L293PEDA_HUMANDisease (XHED)  ---H/I/JL293P
16UniProtVAR_064865L296VEDA_HUMANDisease (XHED)  ---H/I/JL296V
17UniProtVAR_010615D298HEDA_HUMANDisease (XHED)  ---H/I/JD298H
18UniProtVAR_054466D298YEDA_HUMANDisease (XHED)  ---H/I/JD298Y
19UniProtVAR_064866G299DEDA_HUMANDisease (XHED)  ---H/I/JG299D
20UniProtVAR_005188G299SEDA_HUMANDisease (XHED)397516679H/I/JG299S
21UniProtVAR_013487F302SEDA_HUMANDisease (XHED)  ---H/I/JF302S
22UniProtVAR_075316Y304HEDA_HUMANUnclassified (XHED)  ---H/I/JY304H
23UniProtVAR_054467Q306HEDA_HUMANDisease (XHED)  ---H/I/JQ306H
24UniProtVAR_054468V307GEDA_HUMANDisease (XHED)  ---H/I/JV307G
25UniProtVAR_075317D316EEDA_HUMANUnclassified (XHED)  ---H/I/JD316E
26UniProtVAR_067319S319REDA_HUMANDisease (XHED)  ---H/I/JS319R
27UniProtVAR_054469Y320CEDA_HUMANDisease (XHED)  ---H/I/JY320C
28UniProtVAR_064867V323GEDA_HUMANDisease (XHED)  ---H/I/JV323G
29UniProtVAR_075318C332FEDA_HUMANUnclassified (XHED)  ---H/I/JC332F
30UniProtVAR_011080C332YEDA_HUMANDisease (XHED)  ---H/I/JC332Y
31UniProtVAR_071458R334HEDA_HUMANDisease (STHAGX1)142948132H/I/JR334H
32UniProtVAR_064868T338MEDA_HUMANDisease (STHAGX1)132630321H/I/JT338M
33UniProtVAR_054470Y343CEDA_HUMANDisease (XHED)  ---H/I/JY343C
34UniProtVAR_064869C346YEDA_HUMANDisease (XHED)  ---H/I/JC346Y
35UniProtVAR_005189A349TEDA_HUMANDisease (XHED)132630317H/I/JA349T
36UniProtVAR_075319G350DEDA_HUMANUnclassified (XHED)  ---H/I/JG350D
37UniProtVAR_067250L354PEDA_HUMANDisease (XHED)  ---H/I/JL354P
38UniProtVAR_005190A356DEDA_HUMANDisease (XHED)  ---H/I/JA356D
39UniProtVAR_064870A356VEDA_HUMANDisease (XHED)876657639H/I/JA356V
40UniProtVAR_005191R357PEDA_HUMANDisease (XHED)  ---H/I/JR357P
41UniProtVAR_054471Q358EEDA_HUMANDisease (XHED)132630320H/I/JQ358E
42UniProtVAR_075320Q358HEDA_HUMANUnclassified (XHED)  ---H/I/JQ358H
43UniProtVAR_054472I360NEDA_HUMANDisease (XHED)  ---H/I/JI360N
44UniProtVAR_054473N372DEDA_HUMANDisease (XHED)  ---H/I/JN372D
45UniProtVAR_054474M373IEDA_HUMANDisease (XHED)  ---H/I/JM373I
46UniProtVAR_054475S374REDA_HUMANDisease (XHED)  ---H/I/JS374R
47UniProtVAR_013488T378MEDA_HUMANDisease (XHED)  ---H/I/JT378M
48UniProtVAR_054476T378PEDA_HUMANDisease (XHED)  ---H/I/JT378P
49UniProtVAR_071459F379VEDA_HUMANDisease (STHAGX1)  ---H/I/JF379V
50UniProtVAR_064871G381REDA_HUMANDisease (XHED)  ---H/I/JG381R
51UniProtVAR_075321G381VEDA_HUMANUnclassified (XHED)  ---H/I/JG381V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)
Biological Unit 4 (51, 153)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
01UniProtVAR_005187H252LEDA_HUMANDisease (XHED)879255552K/L/MH252L
02UniProtVAR_013485H252YEDA_HUMANDisease (XHED)  ---K/L/MH252Y
03UniProtVAR_011077G255CEDA_HUMANDisease (XHED)  ---K/L/MG255C
04UniProtVAR_011078G255DEDA_HUMANDisease (XHED)  ---K/L/MG255D
05UniProtVAR_071454A259EEDA_HUMANDisease (STHAGX1)879255611K/L/MA259E
06UniProtVAR_071455I260SEDA_HUMANDisease (STHAGX1)  ---K/L/MI260S
07UniProtVAR_064862L266REDA_HUMANDisease (XHED)  ---K/L/ML266R
08UniProtVAR_013486G269VEDA_HUMANDisease (XHED)  ---K/L/MG269V
09UniProtVAR_011079W274GEDA_HUMANDisease (XHED)  ---K/L/MW274G
10UniProtVAR_064863W274REDA_HUMANDisease (XHED)  ---K/L/MW274R
11UniProtVAR_071456R289CEDA_HUMANDisease (STHAGX1)879255551K/L/MR289C
12UniProtVAR_071457R289LEDA_HUMANDisease (STHAGX1)  ---K/L/MR289L
13UniProtVAR_010613G291REDA_HUMANDisease (XHED)397516677K/L/MG291R
14UniProtVAR_010614G291WEDA_HUMANDisease (XHED)  ---K/L/MG291W
15UniProtVAR_064864L293PEDA_HUMANDisease (XHED)  ---K/L/ML293P
16UniProtVAR_064865L296VEDA_HUMANDisease (XHED)  ---K/L/ML296V
17UniProtVAR_010615D298HEDA_HUMANDisease (XHED)  ---K/L/MD298H
18UniProtVAR_054466D298YEDA_HUMANDisease (XHED)  ---K/L/MD298Y
19UniProtVAR_064866G299DEDA_HUMANDisease (XHED)  ---K/L/MG299D
20UniProtVAR_005188G299SEDA_HUMANDisease (XHED)397516679K/L/MG299S
21UniProtVAR_013487F302SEDA_HUMANDisease (XHED)  ---K/L/MF302S
22UniProtVAR_075316Y304HEDA_HUMANUnclassified (XHED)  ---K/L/MY304H
23UniProtVAR_054467Q306HEDA_HUMANDisease (XHED)  ---K/L/MQ306H
24UniProtVAR_054468V307GEDA_HUMANDisease (XHED)  ---K/L/MV307G
25UniProtVAR_075317D316EEDA_HUMANUnclassified (XHED)  ---K/L/MD316E
26UniProtVAR_067319S319REDA_HUMANDisease (XHED)  ---K/L/MS319R
27UniProtVAR_054469Y320CEDA_HUMANDisease (XHED)  ---K/L/MY320C
28UniProtVAR_064867V323GEDA_HUMANDisease (XHED)  ---K/L/MV323G
29UniProtVAR_075318C332FEDA_HUMANUnclassified (XHED)  ---K/L/MC332F
30UniProtVAR_011080C332YEDA_HUMANDisease (XHED)  ---K/L/MC332Y
31UniProtVAR_071458R334HEDA_HUMANDisease (STHAGX1)142948132K/L/MR334H
32UniProtVAR_064868T338MEDA_HUMANDisease (STHAGX1)132630321K/L/MT338M
33UniProtVAR_054470Y343CEDA_HUMANDisease (XHED)  ---K/L/MY343C
34UniProtVAR_064869C346YEDA_HUMANDisease (XHED)  ---K/L/MC346Y
35UniProtVAR_005189A349TEDA_HUMANDisease (XHED)132630317K/L/MA349T
36UniProtVAR_075319G350DEDA_HUMANUnclassified (XHED)  ---K/L/MG350D
37UniProtVAR_067250L354PEDA_HUMANDisease (XHED)  ---K/L/ML354P
38UniProtVAR_005190A356DEDA_HUMANDisease (XHED)  ---K/L/MA356D
39UniProtVAR_064870A356VEDA_HUMANDisease (XHED)876657639K/L/MA356V
40UniProtVAR_005191R357PEDA_HUMANDisease (XHED)  ---K/L/MR357P
41UniProtVAR_054471Q358EEDA_HUMANDisease (XHED)132630320K/L/MQ358E
42UniProtVAR_075320Q358HEDA_HUMANUnclassified (XHED)  ---K/L/MQ358H
43UniProtVAR_054472I360NEDA_HUMANDisease (XHED)  ---K/L/MI360N
44UniProtVAR_054473N372DEDA_HUMANDisease (XHED)  ---K/L/MN372D
45UniProtVAR_054474M373IEDA_HUMANDisease (XHED)  ---K/L/MM373I
46UniProtVAR_054475S374REDA_HUMANDisease (XHED)  ---K/L/MS374R
47UniProtVAR_013488T378MEDA_HUMANDisease (XHED)  ---K/L/MT378M
48UniProtVAR_054476T378PEDA_HUMANDisease (XHED)  ---K/L/MT378P
49UniProtVAR_071459F379VEDA_HUMANDisease (STHAGX1)  ---K/L/MF379V
50UniProtVAR_064871G381REDA_HUMANDisease (XHED)  ---K/L/MG381R
51UniProtVAR_075321G381VEDA_HUMANUnclassified (XHED)  ---K/L/MG381V

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (1, 12)

Asymmetric Unit (1, 12)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.EDA_HUMAN250-385
 
 
 
 
 
 
 
 
 
 
 
  12A:250-385
B:250-385
D:250-385
E:250-385
F:250-385
G:250-385
H:250-385
I:250-385
J:250-385
K:250-385
L:250-385
M:250-385
Biological Unit 1 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.EDA_HUMAN250-385
 
 
 
 
 
 
 
 
 
 
 
  3A:250-385
B:250-385
D:250-385
-
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.EDA_HUMAN250-385
 
 
 
 
 
 
 
 
 
 
 
  3-
-
-
E:250-385
F:250-385
G:250-385
-
-
-
-
-
-
Biological Unit 3 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.EDA_HUMAN250-385
 
 
 
 
 
 
 
 
 
 
 
  3-
-
-
-
-
-
H:250-385
I:250-385
J:250-385
-
-
-
Biological Unit 4 (1, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1TNF_2PS50049 TNF family profile.EDA_HUMAN250-385
 
 
 
 
 
 
 
 
 
 
 
  3-
-
-
-
-
-
-
-
-
K:250-385
L:250-385
M:250-385

(-) Exons   (4, 47)

Asymmetric Unit (4, 47)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.1aENST000003745521aENSE00002192202X:68835911-68836548638EDA_HUMAN1-1321320--
1.11aENST0000037455211aENSE00001178419X:69176877-69176982106EDA_HUMAN133-168360--
1.12ENST0000037455212ENSE00001155510X:69243068-6924309124EDA_HUMAN168-17690--
1.13ENST0000037455213ENSE00001164103X:69247707-69247886180EDA_HUMAN176-236610--
1.14ENST0000037455214ENSE00001041165X:69249354-6924938835EDA_HUMAN236-2471211A:247-247
B:247-247
D:247-247
E:242-247
F:247-247
G:247-247
H:247-247
I:247-247
-
K:247-247
L:246-247
M:247-247
1
1
1
6
1
1
1
1
-
1
2
1
1.15ENST0000037455215ENSE00001041190X:69250319-6925037052EDA_HUMAN248-2651812A:248-265
B:248-265
D:248-265
E:248-265
F:248-265
G:248-265
H:248-265
I:248-265
J:248-265
K:248-265
L:248-265
M:248-265
18
18
18
18
18
18
18
18
18
18
18
18
1.16cENST0000037455216cENSE00001463796X:69253248-69253378131EDA_HUMAN265-3084412A:265-308
B:265-308
D:265-308
E:265-308
F:265-308
G:265-308
H:265-308
I:265-308
J:265-308
K:265-308
L:265-308
M:265-308
44
44
44
44
44
44
44
44
44
44
44
44
1.17bENST0000037455217bENSE00001463804X:69255208-692593194112EDA_HUMAN309-3918312A:309-390
B:309-390
D:309-390
E:309-390
F:309-390
G:309-390
H:309-388
I:309-389
J:309-390
K:309-391
L:309-390
M:309-390
82
82
82
82
82
82
80
81
82
83
82
82

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:144
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:144
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7a_ A: Ectodysplasin A, Eda-a1                                                                                                               SCOP domains
               CATH domains 1rj7A00 A:247-390  [code=2.60.120.40, no name defined]                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee....eehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeee.....eeeeeee..eeeeeeee.........eeeeeeeeeee....eeeeee....eeee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: A:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: A:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: A:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 A 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    

Chain B from PDB  Type:PROTEIN  Length:144
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:144
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7b_ B: Ectodysplasin A, Eda-a1                                                                                                               SCOP domains
               CATH domains 1rj7B00 B:247-390  [code=2.60.120.40, no name defined]                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeee....eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee....eeee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: B:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: B:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: B:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 B 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    

Chain D from PDB  Type:PROTEIN  Length:144
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:144
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7d_ D: Ectodysplasin A, Eda-a1                                                                                                               SCOP domains
               CATH domains 1rj7D00 D:247-390  [code=2.60.120.40, no name defined]                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeee.....eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee.....eee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: D:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: D:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: D:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 D 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    

Chain E from PDB  Type:PROTEIN  Length:149
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:149
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381         
            EDA_HUMAN   242 GTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7e_ E: Ectodysplasin A, Eda-a1                                                                                                                    SCOP domains
               CATH domains 1rj7E00 E:242-390  [code=2.60.120.40, no name defined]                                                                                                CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......eeeeeee....eehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeeee...eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee...eeee.......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) ----------L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----------Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE --------TNF_2  PDB: E:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1.14  Exon 1.15         -------------------------------------------Exon 1.17b  PDB: E:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.16c  PDB: E:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 E 242 GTRENQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   251       261       271       281       291       301       311       321       331       341       351       361       371       381         

Chain F from PDB  Type:PROTEIN  Length:144
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:144
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7f_ F: Ectodysplasin A, Eda-a1                                                                                                               SCOP domains
               CATH domains 1rj7F00 F:247-390  [code=2.60.120.40, no name defined]                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee..eeeehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeeee...eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee...eeeeee.....eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: F:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: F:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: F:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 F 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    

Chain G from PDB  Type:PROTEIN  Length:144
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:144
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7g_ G: Ectodysplasin A, Eda-a1                                                                                                               SCOP domains
               CATH domains 1rj7G00 G:247-390  [code=2.60.120.40, no name defined]                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeee...eeehhhhh.......eeeeee....eee......eee...eeeeeeeeeeeeee.....eeeeeee..eeeeeeee.........eeeeeeeeeee....eeeeee....eeee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: G:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: G:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: G:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 G 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    

Chain H from PDB  Type:PROTEIN  Length:142
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:142
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386  
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEA 388
               SCOP domains d1rj7h_ H: Ectodysplasin A, Eda-a1                                                                                                             SCOP domains
               CATH domains 1rj7H00 H:247-388  [code=2.60.120.40, no name defined]                                                                                         CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeeee...eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee...eeeee......eeeeeeee.. Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: H:250-385 UniProt: 250-385                                                                                                  --- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: H:309-388 UniProt: 309-391 [INCOMPLETE]                         Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: H:265-308 UniProt: 265-308 -------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 H 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEA 388
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386  

Chain I from PDB  Type:PROTEIN  Length:143
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:143
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386   
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAP 389
               SCOP domains d1rj7i_ I: Ectodysplasin A, Eda-a1                                                                                                              SCOP domains
               CATH domains 1rj7I00 I:247-389  [code=2.60.120.40, no name defined]                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee....eehhhhhhhhh...eeeeee....eeee....eeee...eeeeeeeeeeeeeee....eeeeeee..eeeeeeee.........eeeeeeeeeee....eeeeee...eeeee......eeeeeeee... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R-------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V-------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: I:250-385 UniProt: 250-385                                                                                                  ---- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: I:309-389 UniProt: 309-391 [INCOMPLETE]                          Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: I:265-308 UniProt: 265-308 --------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 I 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAP 389
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386   

Chain J from PDB  Type:PROTEIN  Length:143
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:143
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387   
            EDA_HUMAN   248 PAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7j_ J: Ectodysplasin A, Eda-a1                                                                                                              SCOP domains
               CATH domains 1rj7J00 J:248-390  [code=2.60.120.40, no name defined]                                                                                          CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....eeehhhhh.................eeee....eeee...eeeeeeeeeeeeeee...eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee...eeeee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) ----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE --TNF_2  PDB: J:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) Exon 1.15         -------------------------------------------Exon 1.17b  PDB: J:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) -----------------Exon 1.16c  PDB: J:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 J 248 PAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   257       267       277       287       297       307       317       327       337       347       357       367       377       387   

Chain K from PDB  Type:PROTEIN  Length:145
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:145
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386     
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPAS 391
               SCOP domains d1rj7k_ K: Ectodysplasin A, Eda-a1                                                                                                                SCOP domains
               CATH domains 1rj7K00 K:247-391  [code=2.60.120.40, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeee...eeehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeee.....eeeeeee..eeeeeeee.........eeeeeeeeeee....eeeeee....eeee......eeeeeeee..... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R---------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V---------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: K:250-385 UniProt: 250-385                                                                                                  ------ PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: K:309-391 UniProt: 309-391                                         Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: K:265-308 UniProt: 265-308 ----------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 K 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPAS 391
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386     

Chain L from PDB  Type:PROTEIN  Length:145
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:145
                                   255       265       275       285       295       305       315       325       335       345       355       365       375       385     
            EDA_HUMAN   246 NQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7l_ L: Ectodysplasin A, Eda-a1                                                                                                                SCOP domains
               CATH domains 1rj7L00 L:246-390  [code=2.60.120.40, no name defined]                                                                                            CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeee...eeehhhhh.......eeeeee....eeee....eeee...eeeeeeeeeeeeeee...eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee...eeeee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) ------L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) ------Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ----TNF_2  PDB: L:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1.Exon 1.15         -------------------------------------------Exon 1.17b  PDB: L:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) -------------------Exon 1.16c  PDB: L:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 L 246 NQPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   255       265       275       285       295       305       315       325       335       345       355       365       375       385     

Chain M from PDB  Type:PROTEIN  Length:144
 aligned with EDA_HUMAN | Q92838 from UniProtKB/Swiss-Prot  Length:391

    Alignment length:144
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    
            EDA_HUMAN   247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
               SCOP domains d1rj7m_ M: Ectodysplasin A, Eda-a1                                                                                                               SCOP domains
               CATH domains 1rj7M00 M:247-390  [code=2.60.120.40, no name defined]                                                                                           CATH domains
           Pfam domains (1) -------------------------TNF-1rj7M01 M:272-385                                                                                             ----- Pfam domains (1)
           Pfam domains (2) -------------------------TNF-1rj7M02 M:272-385                                                                                             ----- Pfam domains (2)
           Pfam domains (3) -------------------------TNF-1rj7M03 M:272-385                                                                                             ----- Pfam domains (3)
           Pfam domains (4) -------------------------TNF-1rj7M04 M:272-385                                                                                             ----- Pfam domains (4)
           Pfam domains (5) -------------------------TNF-1rj7M05 M:272-385                                                                                             ----- Pfam domains (5)
           Pfam domains (6) -------------------------TNF-1rj7M06 M:272-385                                                                                             ----- Pfam domains (6)
           Pfam domains (7) -------------------------TNF-1rj7M07 M:272-385                                                                                             ----- Pfam domains (7)
           Pfam domains (8) -------------------------TNF-1rj7M08 M:272-385                                                                                             ----- Pfam domains (8)
           Pfam domains (9) -------------------------TNF-1rj7M09 M:272-385                                                                                             ----- Pfam domains (9)
          Pfam domains (10) -------------------------TNF-1rj7M10 M:272-385                                                                                             ----- Pfam domains (10)
          Pfam domains (11) -------------------------TNF-1rj7M11 M:272-385                                                                                             ----- Pfam domains (11)
          Pfam domains (12) -------------------------TNF-1rj7M12 M:272-385                                                                                             ----- Pfam domains (12)
         Sec.struct. author ..eeeeee....eeehhhhh........eeeee....eee......eee...eeeeeeeeeeeeeee...eeeeeeee..eeeeeeeee........eeeeeeeeeee....eeeeee...eeeee......eeeeeeee.... Sec.struct. author
             SAPs(SNPs) (1) -----L--C---ES-----R--V----G--------------C-R-P--V-HD--S-H-HG--------E--RC--G--------F-H---M----C--Y--TD---P-DPE-N-----------DIR---MV-R--------- SAPs(SNPs) (1)
             SAPs(SNPs) (2) -----Y--D------------------R--------------L-W------YS--------------------------------Y-----------------------V-H-------------------P--V--------- SAPs(SNPs) (2)
                    PROSITE ---TNF_2  PDB: M:250-385 UniProt: 250-385                                                                                                  ----- PROSITE
           Transcript 1 (1) 1Exon 1.15         -------------------------------------------Exon 1.17b  PDB: M:309-390 UniProt: 309-391 [INCOMPLETE]                           Transcript 1 (1)
           Transcript 1 (2) ------------------Exon 1.16c  PDB: M:265-308 UniProt: 265-308 ---------------------------------------------------------------------------------- Transcript 1 (2)
                 1rj7 M 247 QPAVVHLQGQGSAIQVKNDLSGGVLNDWSRITMNPKVFKLHPRSGELEVLVDGTYFIYSQVEVYYINFTDFASYEVVVDEKPFLQCTRSIETGKTNYNTCYTAGVCLLKARQKIAVKMVHADISINMSKHTTFFGAIRLGEAPA 390
                                   256       266       276       286       296       306       316       326       336       346       356       366       376       386    

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)
1a1rj7H00H:247-388
1b1rj7I00I:247-389
1c1rj7J00J:248-390
1d1rj7A00A:247-390
1e1rj7B00B:247-390
1f1rj7D00D:247-390
1g1rj7F00F:247-390
1h1rj7G00G:247-390
1i1rj7M00M:247-390
1j1rj7K00K:247-391
1k1rj7L00L:246-390
1l1rj7E00E:242-390

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: C1q_TNF (45)
(-)
Family: TNF (37)
1aTNF-1rj7M01M:272-385
1bTNF-1rj7M02M:272-385
1cTNF-1rj7M03M:272-385
1dTNF-1rj7M04M:272-385
1eTNF-1rj7M05M:272-385
1fTNF-1rj7M06M:272-385
1gTNF-1rj7M07M:272-385
1hTNF-1rj7M08M:272-385
1iTNF-1rj7M09M:272-385
1jTNF-1rj7M10M:272-385
1kTNF-1rj7M11M:272-385
1lTNF-1rj7M12M:272-385

(-) Gene Ontology  (33, 33)

Asymmetric Unit(hide GO term definitions)
Chain A,B,D,E,F,G,H,I,J,K,L,M   (EDA_HUMAN | Q92838)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0005102    receptor binding    Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
    GO:0005164    tumor necrosis factor receptor binding    Interacting selectively and non-covalently with the tumor necrosis factor receptor.
biological process
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0007160    cell-matrix adhesion    The binding of a cell to the extracellular matrix via adhesion molecules.
    GO:0007398    ectoderm development    The process whose specific outcome is the progression of the ectoderm over time, from its formation to the mature structure. In animal embryos, the ectoderm is the outer germ layer of the embryo, formed during gastrulation.
    GO:0010467    gene expression    The process in which a gene's sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0001942    hair follicle development    The process whose specific outcome is the progression of the hair follicle over time, from its formation to the mature structure. A hair follicle is a tube-like opening in the epidermis where the hair shaft develops and into which the sebaceous glands open.
    GO:0060789    hair follicle placode formation    The developmental process in which a hair placode forms. An hair follicle placode is a thickening of the ectoderm that will give rise to the hair follicle bud.
    GO:0006955    immune response    Any immune system process that functions in the calibrated response of an organism to a potential internal or invasive threat.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0042475    odontogenesis of dentin-containing tooth    The process whose specific outcome is the progression of a dentin-containing tooth over time, from its formation to the mature structure. A dentin-containing tooth is a hard, bony organ borne on the jaw or other bone of a vertebrate, and is composed mainly of dentin, a dense calcified substance, covered by a layer of enamel.
    GO:0043473    pigmentation    The accumulation of pigment in an organism, tissue or cell, either by increased deposition or by increased number of cells.
    GO:0043123    positive regulation of I-kappaB kinase/NF-kappaB signaling    Any process that activates or increases the frequency, rate or extent of I-kappaB kinase/NF-kappaB signaling.
    GO:0042346    positive regulation of NF-kappaB import into nucleus    Any process that activates or increases the frequency, rate or extent of transfer of NF-kappaB, a transcription factor for eukaryotic RNA polymerase II promoters, from the cytoplasm into the nucleus, across the nuclear membrane.
    GO:0051092    positive regulation of NF-kappaB transcription factor activity    Any process that activates or increases the frequency, rate or extent of activity of the transcription factor NF-kappaB.
    GO:0090263    positive regulation of canonical Wnt signaling pathway    Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
    GO:0010628    positive regulation of gene expression    Any process that increases the frequency, rate or extent of gene expression. Gene expression is the process in which a gene's coding sequence is converted into a mature gene product or products (proteins or RNA). This includes the production of an RNA transcript as well as any processing to produce a mature RNA product or an mRNA or circRNA (for protein-coding genes) and the translation of that mRNA or circRNA into protein. Protein maturation is included when required to form an active form of a product from an inactive precursor form.
    GO:0060662    salivary gland cavitation    The process in which the solid core of salivary epithelium gives rise to the hollow tube of the gland.
    GO:0007165    signal transduction    The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
    GO:0043588    skin development    The process whose specific outcome is the progression of the skin over time, from its formation to the mature structure. The skin is the external membranous integument of an animal. In vertebrates the skin generally consists of two layers, an outer nonsensitive and nonvascular epidermis (cuticle or skarfskin) composed of cells which are constantly growing and multiplying in the deeper, and being thrown off in the superficial layers, as well as an inner vascular dermis (cutis, corium or true skin) composed mostly of connective tissue.
    GO:0061153    trachea gland development    The progression of a trachea gland over time, from its formation to the mature structure. Trachea glands are found under the mucus of the trachea and secrete mucus, and agents that help protect the lung from injury and infection.
    GO:0033209    tumor necrosis factor-mediated signaling pathway    A series of molecular signals initiated by the binding of a tumor necrosis factor to a receptor on the surface of a cell, and ending with regulation of a downstream cellular process, e.g. transcription.
cellular component
    GO:0045177    apical part of cell    The region of a polarized cell that forms a tip or is distal to a base. For example, in a polarized epithelial cell, the apical region has an exposed surface and lies opposite to the basal lamina that separates the epithelium from other tissue.
    GO:0005581    collagen trimer    A protein complex consisting of three collagen chains assembled into a left-handed triple helix. These trimers typically assemble into higher order structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0005887    integral component of plasma membrane    The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 1rj7)
 
  Sites
(no "Sites" information available for 1rj7)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 1rj7)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]
    Biological Unit 3  [ Jena3D ]
    Biological Unit 4  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  1rj7
    Family and Domain InformationProDom | SYSTERS
    General Structural InformationGlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in MembranesOPM
    Protein SurfaceSURFACE
    Secondary StructureDSSP (structure derived) | HSSP (homology derived)
    Structural GenomicsGeneCensus
    Structural NeighboursCE | VAST
    Structure ClassificationCATH | Dali | SCOP
    Validation and Original DataBMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  EDA_HUMAN | Q92838
    Comparative Protein Structure ModelsModBase
    Genomic InformationEnsembl
    Protein-protein InteractionDIP
    Sequence, Family and Domain InformationInterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  (no 'Enzyme Classificator' available)
    General Enzyme InformationBRENDA | EC-PDB | Enzyme | IntEnz
    PathwayKEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  305100
    Disease InformationOMIM
  313500
    Disease InformationOMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related InformationGenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain InformationXDom
    Interatomic Contacts of Structural UnitsCSU
    Ligand-protein ContactsLPC
    Protein CavitiescastP
    Sequence and Secondary StructurePDBCartoon
    Structure AlignmentSTRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence BrowserSTING
 
Access by UniProt ID/Accession number
  EDA_HUMAN | Q92838
    Protein Disorder PredictionDisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        EDA_HUMAN | Q928381rj8

(-) Related Entries Specified in the PDB File

1rj8 CRYSTAL STRUCTURE OF EDA-A2