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Title :   NMR STRUCTURE OF THE 30MER STEMLOOP-D OF COXSACKIEVIRAL RNA

Authors :   O. Ohlenschlager, J. Wohnert, E. Bucci, S. Seitz, S. Hafner, R. Ramachandran, R. Zell, M. Gorlach

Date :   10 Nov 03 (Deposition) - 23 Mar 04 (Release) - 24 Feb 09 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)

Keywords :   Loop With Conformation Similar To Stable Uncg-Tetraloops And U:G Closing Base Pair, Base-Paired U:U-C:U-U:U Mismatch, A-Form Helix Stems, Rna (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   O. Ohlenschlager, J. Wohnert, E. Bucci, S. Seitz, S. Hafner, R. Ramachandran, R. Zell, M. Gorlach
The Structure Of The Stemloop D Subdomain Of Coxsackievirus B3 Cloverleaf Rna And Its Interaction With The Proteinase 3C.
Structure V. 12 237 2004
PubMed-ID: 14962384 | Reference-DOI: 10.1016/S0969-2126(04)00008-5
(for further references see the PDB file header)

Compounds

Molecule 1 - STEMLOOP-D RNA OF THE 5'-CLOVERLEAF OF COXSACKIEVIRUS B3
	Chains	:	A
	Engineered	:	YES
	Expression System	:	IN VITRO
	Expression System Plasmid	:	PUC-19
	Expression System Vector Type	:	PLASMID
	Gene	:	5'-NONTRANSLATED REGION
	Organism Scientific	:	HUMAN COXSACKIEVIRUS B3
	Organism Taxid	:	12072
	Other Details	:	PROTEINASE 3C BINDING DOMAIN
	Other Details - Source	:	TWO NUCLEOTIDES (GG) AT 5'-END AND TWO NUCLEOTIDES (UC) AT THE 3'-END WERE ADDED FOR IN VITRO PRODUCTION

Structural Features

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Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:RNA  Length:30
                                                             
                  1rfr A  1 GGCACUCUGGUAUCACGGUACCUUUGUGUC 30
                                    10        20        30

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