1RF6 - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   STRUCTURAL STUDIES OF STREPTOCOCCUS PNEUMONIAE EPSP SYNTHASE IN S3P-GLP BOUND STATE

Authors :   H. Park, J. L. Hilsenbeck, H. J. Kim, W. A. Shuttleworth, Y. H. Park, J. N. Evans, C. Kang

Date :   07 Nov 03 (Deposition) - 17 Feb 04 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.90

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Shikimate Pathway, Epsp Synthase, S3P, Glyphosate, Pep, S. Pneumoniae, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   H. Park, J. L. Hilsenbeck, H. J. Kim, W. A. Shuttleworth, Y. H. Park, J. N. Evans, C. Kang
Structural Studies Of Streptococcus Pneumoniae Epsp Synthase In Unliganded State, Tetrahedral Intermediate-Bound State And S3P-Glp-Bound State.
Mol. Microbiol. V. 51 963 2004
PubMed-ID: 14763973 | Reference-DOI: 10.1046/J.1365-2958.2003.03885.X
(for further references see the PDB file header)

Molecule 1 - 5-ENOLPYRUVYLSHIKIMATE-3-PHOSPHATE SYNTHASE
	Chains	:	A, B, C, D
	EC Number	:	2.5.1.19
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Gene	:	AROA
	Organism Scientific	:	STREPTOCOCCUS PNEUMONIAE
	Organism Taxid	:	1313

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	GPJ	4	Ligand/Ion	GLYPHOSATE
2	S3P	4	Ligand/Ion	SHIKIMATE-3-PHOSPHATE

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	GPJ	1	Ligand/Ion	GLYPHOSATE
2	S3P	1	Ligand/Ion	SHIKIMATE-3-PHOSPHATE

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	GPJ	1	Ligand/Ion	GLYPHOSATE
2	S3P	1	Ligand/Ion	SHIKIMATE-3-PHOSPHATE

Biological Unit 3 (2, 2)

No.	Name	Count	Type	Full Name
1	GPJ	1	Ligand/Ion	GLYPHOSATE
2	S3P	1	Ligand/Ion	SHIKIMATE-3-PHOSPHATE

Biological Unit 4 (2, 2)

No.	Name	Count	Type	Full Name
1	GPJ	1	Ligand/Ion	GLYPHOSATE
2	S3P	1	Ligand/Ion	SHIKIMATE-3-PHOSPHATE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	LYS A:20 , ASN A:90 , GLY A:92 , THR A:93 , ARG A:120 , GLN A:168 , ASP A:312 , GLU A:340 , ARG A:343 , HIS A:384 , ARG A:385 , S3P A:1429 , HOH A:1430 , HOH A:1462 , HOH A:1483	BINDING SITE FOR RESIDUE GPJ A 1428
2	AC2	SOFTWARE	LYS A:20 , SER A:21 , ARG A:25 , THR A:93 , SER A:166 , ALA A:167 , GLN A:168 , ILE A:311 , ASP A:312 , LYS A:339 , GPJ A:1428 , HOH A:1448 , HOH A:1483 , HOH A:1499 , HOH A:1515 , HOH A:1542	BINDING SITE FOR RESIDUE S3P A 1429
3	AC3	SOFTWARE	LYS B:20 , ASN B:90 , GLY B:92 , THR B:93 , ARG B:120 , GLN B:168 , ASP B:312 , GLU B:340 , ARG B:343 , HIS B:384 , ARG B:385 , S3P B:1529 , HOH B:1530 , HOH B:1582	BINDING SITE FOR RESIDUE GPJ B 1528
4	AC4	SOFTWARE	LYS B:20 , SER B:21 , ARG B:25 , THR B:93 , SER B:166 , ALA B:167 , GLN B:168 , ASP B:312 , LYS B:339 , GPJ B:1528 , HOH B:1556 , HOH B:1575 , HOH B:1582 , HOH B:1612 , HOH B:1614	BINDING SITE FOR RESIDUE S3P B 1529
5	AC5	SOFTWARE	LYS C:20 , ASN C:90 , GLY C:92 , THR C:93 , ARG C:120 , GLN C:168 , ASP C:312 , GLU C:340 , ARG C:343 , HIS C:384 , ARG C:385 , S3P C:1629 , HOH C:1630 , HOH C:1644 , HOH C:1718	BINDING SITE FOR RESIDUE GPJ C 1628
6	AC6	SOFTWARE	LYS C:20 , SER C:21 , ARG C:25 , THR C:93 , SER C:166 , ALA C:167 , GLN C:168 , ARG C:193 , ASP C:312 , LYS C:339 , GPJ C:1628 , HOH C:1657 , HOH C:1661 , HOH C:1706 , HOH C:1718 , HOH C:1763	BINDING SITE FOR RESIDUE S3P C 1629
7	AC7	SOFTWARE	LYS D:20 , ASN D:90 , GLY D:92 , THR D:93 , ARG D:120 , GLN D:168 , ASP D:312 , GLU D:340 , ARG D:343 , HIS D:384 , ARG D:385 , S3P D:1729 , HOH D:1730 , HOH D:1756 , HOH D:1787	BINDING SITE FOR RESIDUE GPJ D 1728
8	AC8	SOFTWARE	LYS D:20 , SER D:21 , ARG D:25 , THR D:93 , SER D:166 , ALA D:167 , GLN D:168 , ARG D:193 , ASP D:312 , LYS D:339 , GPJ D:1728 , HOH D:1756 , HOH D:1759 , HOH D:1776 , HOH D:1814	BINDING SITE FOR RESIDUE S3P D 1729

(no "SS Bond" information available for 1RF6)

Asymmetric Unit

No.	Residues
1	Pro A:145	-	Pro A:146
2	Gly A:218	-	Pro A:219
3	Pro B:145	-	Pro B:146
4	Gly B:218	-	Pro B:219
5	Pro C:145	-	Pro C:146
6	Gly C:218	-	Pro C:219
7	Pro D:145	-	Pro D:146
8	Gly D:218	-	Pro D:219

(no "SAP(SNP)/Variant" information available for 1RF6)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_STRPN	86-100	4	A:86-100 B:86-100 C:86-100 D:86-100
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_STRPN	337-355	4	A:337-355 B:337-355 C:337-355 D:337-355

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_STRPN	86-100	1	A:86-100 - - -
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_STRPN	337-355	1	A:337-355 - - -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_STRPN	86-100	1	- B:86-100 - -
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_STRPN	337-355	1	- B:337-355 - -

Biological Unit 3 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_STRPN	86-100	1	- - C:86-100 -
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_STRPN	337-355	1	- - C:337-355 -

Biological Unit 4 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	EPSP_SYNTHASE_1	PS00104	EPSP synthase signature 1.	AROA_STRPN	86-100	1	- - - D:86-100
2	EPSP_SYNTHASE_2	PS00885	EPSP synthase signature 2.	AROA_STRPN	337-355	1	- - - D:337-355

(no "Exon" information available for 1RF6)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:427
 aligned with AROA_STRPN | Q9S400 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       
           AROA_STRPN     1 MKLKTNIRHLHGSIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITIQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLKQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEIGGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
               SCOP domains d1rf6a_ A: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1rf6A01            1rf6A02 A:20-229  [code=3.65.10.10, no name defined]                                                                                                                                                              1rf6A01 A:1-19,A:230-427  [code=3.65.10.10, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .ee......eeeee....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeeee..eeeee.............ee...hhhhhhhhhhhhhhh..eeeee...hhhhh.hhhhhhhhhhh..eeeee....eeeeeee........eee....hhhhhhhhhhhhh...eeeeee......hhhhhhhhhh....eee..eeeeee.......eee...hhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhh..eeeeeeee....eeeeeee.......ee...hhhhhhhhhhhhhhhhhh..eeeee..hhhhhhh....hhhhhhhhhh....eeee..eeeeee......eeee...hhhhhhhhhhhhhh.....eeeehhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rf6 A   1 MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Chain B from PDB  Type:PROTEIN  Length:427
 aligned with AROA_STRPN | Q9S400 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       
           AROA_STRPN     1 MKLKTNIRHLHGSIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITIQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLKQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEIGGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
               SCOP domains d1rf6b_ B: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1rf6B01            1rf6B02 B:20-229  [code=3.65.10.10, no name defined]                                                                                                                                                              1rf6B01 B:1-19,B:230-427  [code=3.65.10.10, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeeee..eeeee.............ee...hhhhhhhhhhhhhhh..eeeee...hhhhh.hhhhhhhhhhh..eeeee....eeeeeee........eee....hhhhhhhhhhhhh...eeeeee......hhhhhhhhhh....eee..eeeeee.......eee...hhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhh..eeeeeeee....eeeeeee.......ee..hhhhhhh.hhhhhhhhhhh....eee..hhhhhhh....hhhhhhhhhh....eeee..eeee........eeee...hhhhhhhhhhhhhh.....eeeehhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rf6 B   1 MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Chain C from PDB  Type:PROTEIN  Length:427
 aligned with AROA_STRPN | Q9S400 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       
           AROA_STRPN     1 MKLKTNIRHLHGSIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITIQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLKQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEIGGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
               SCOP domains d1rf6c_ C: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1rf6C01            1rf6C02 C:20-229  [code=3.65.10.10, no name defined]                                                                                                                                                              1rf6C01 C:1-19,C:230-427  [code=3.65.10.10, no name defined]                                                                                                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .........eeeee....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeeee..eeeee.............ee...hhhhhhhhhhhhhhh..eeeee...hhhhh.hhhhhhhhhhh..eeeee....eeeeeee........eee....hhhhhhhhhhhhh...eeeeee......hhhhhhhhhh....eee..eeeeee.......eee...hhhhhhhhhhhhhhh..eeeeeeeee.....hhhhhhhhhhh.eeeeeeee....eeeeeee.......ee..hhhhhhh.hhhhhhhhhhh....eee..hhhhhhh..hhhhhhhhhhhh....eeee..eeee........eeee...hhhhhhhhhhhhh......eeeehhhhhhhh..hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rf6 C   1 MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Chain D from PDB  Type:PROTEIN  Length:427
 aligned with AROA_STRPN | Q9S400 from UniProtKB/Swiss-Prot  Length:427

    Alignment length:427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       
           AROA_STRPN     1 MKLKTNIRHLHGSIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITIQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLKQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEIGGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
               SCOP domains d1rf6d_ D: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase                                                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 1rf6D01            1rf6D02 D:20-229  [code=3.65.10.10, no name defined]                                                                                                                                                              1rf6D01 D:1-19,D:230-427  [code=3.65.10.10, no name defined]                                                                                                                                           CATH domains
           Pfam domains (1) ---EPSP_synthase-1rf6D01 D:4-421                                                                                                                                                                                                                                                                                                                                                                                                     ------ Pfam domains (1)
           Pfam domains (2) ---EPSP_synthase-1rf6D02 D:4-421                                                                                                                                                                                                                                                                                                                                                                                                     ------ Pfam domains (2)
           Pfam domains (3) ---EPSP_synthase-1rf6D03 D:4-421                                                                                                                                                                                                                                                                                                                                                                                                     ------ Pfam domains (3)
           Pfam domains (4) ---EPSP_synthase-1rf6D04 D:4-421                                                                                                                                                                                                                                                                                                                                                                                                     ------ Pfam domains (4)
         Sec.struct. author .........eeeee....hhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhhhh..eeeee..eeeee.............ee...hhhhhhhhhhhhhhh..eeeee...hhhhh.hhhhhhhhhhh..eeeee....eeeeeee........eee....hhhhhhhhhhhhh...eeeeee......hhhhhhhhhh....eee..eeeeee.......eee...hhhhhhhhhhhhhhh..eeeeeeeee.hhhhhhhhhhhhhhh.eeeeeeee....eeeeeee...ee..eehhhhhhhhh.hhhhhhhhhhheeeeeee..hhhhhhh..hhhhhhhhhhhh....eeee..eeeeee......eeee...hhhhhhhhhhhhh......eeeehhhhhhhh..hhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------EPSP_SYNTHASE_1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------EPSP_SYNTHASE_2    ------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rf6 D   1 MKLKTNIRHLHGIIRVPGDKSISHRSIIFGSLAEGETKVYDILRGEDVLSTMQVFRDLGVEIEDKDGVITVQGVGMAGLKAPQNALNMGNSGTSIRLISGVLAGADFEVEMFGDDSLSKRPMDRVTLPLKKMGVSISGQTERDLPPLRLKGTKNLRPIHYELPIASAQVKSALMFAALQAKGESVIIEKEYTRNHTEDMLQQFGGHLSVDGKKITVQGPQKLTGQKVVVPGDISSAAFWLVAGLIAPNSRLVLQNVGINETRTGIIDVIRAMGGKLEITEIDPVAKSATLIVESSDLKGTEICGALIPRLIDELPIIALLATQAQGVTVIKDAEELKVKETDRIQVVADALNSMGADITPTADGMIIKGKSALHGARVNTFGDHRIGMMTAIAALLVADGEVELDRAEAINTSYPSFFDDLESLIHG 427
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: IF3-like (127)

Superfamily: EPT/RTPC-like (82)

Family: Enolpyruvate transferase, EPT (68)

Protein domain: 5-enol-pyruvyl shikimate-3-phosphate (EPSP) synthase (26)

Pneumococcus (Streptococcus pneumoniae) [TaxId: 1313] (3)

1a	d1rf6a_	A:
1b	d1rf6b_	B:
1c	d1rf6c_	C:
1d	d1rf6d_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-beta prism (50)

Topology: UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain (50)

Homologous Superfamily: [code=3.65.10.10, no name defined] (47)

Streptococcus pneumoniae. Organism_taxid: 1313. (3)

1a	1rf6A02	A:20-229
1b	1rf6B02	B:20-229
1c	1rf6A01	A:1-19,A:230-427
1d	1rf6B01	B:1-19,B:230-427
1e	1rf6C01	C:1-19,C:230-427
1f	1rf6D01	D:1-19,D:230-427
1g	1rf6C02	C:20-229
1h	1rf6D02	D:20-229

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: EPT_RTPC (43)

Family: EPSP_synthase (40)

Streptococcus pneumoniae (3)

1a	EPSP_synthase-1rf6D01	D:4-421
1b	EPSP_synthase-1rf6D02	D:4-421
1c	EPSP_synthase-1rf6D03	D:4-421
1d	EPSP_synthase-1rf6D04	D:4-421

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (AROA_STRPN | Q9S400)

molecular function
	GO:0003866	3-phosphoshikimate 1-carboxyvinyltransferase activity	Catalysis of the reaction: 3-phosphoshikimate + phosphoenolpyruvate = 5-O-(1-carboxyvinyl)-3-phosphoshikimate + phosphate.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	Catalysis of the transfer of an alkyl or aryl (but not methyl) group from one compound (donor) to another (acceptor).
biological process
	GO:0009073	aromatic amino acid family biosynthetic process	The chemical reactions and pathways resulting in the formation of aromatic amino acid family, amino acids with aromatic ring (phenylalanine, tyrosine, tryptophan).
	GO:0008652	cellular amino acid biosynthetic process	The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
	GO:0009423	chorismate biosynthetic process	The chemical reactions and pathways resulting in the formation of the unsymmetrical ether derived from phosphoenolpyruvate and 5-phosphoshikimic acid formed as an intermediate in the biosynthesis of aromatic amino acids and many other compounds.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Asymmetric Unit
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	Cis Peptide Bonds
		Gly A:218 - Pro A:219	[ RasMol ]
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	1rf6
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	AROA_STRPN \| Q9S400
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	2.5.1.19
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	AROA_STRPN \| Q9S400
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UniProtKB/Swiss-Prot
	AROA_STRPN \| Q9S400	:	1rf4 1rf5

1rf4	FLUORINATED TETRAHEDRAL INTERMEDIATE
1rf5	UNLIGANDED STATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (8, 8)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Exons (0, 0)

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SCOP Domains (1, 4)

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Pfam Domains (1, 4)

Gene Ontology (9, 9)

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