1RD8 - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE 1918 HUMAN H1 HEMAGGLUTININ PRECURSOR (HA0)

Authors :   J. Stevens, A. L. Corper, C. F. Basler, J. K. Taubenberger, P. Palese, I.

Date :   05 Nov 03 (Deposition) - 23 Mar 04 (Release) - 14 Dec 16 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.00

Chains :   Asym./Biol. Unit : A,B,C,D,E,F

Keywords :   Glycoprotein, Membrane-Fusion Precursor, Virus/Viral Protein, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Stevens, A. L. Corper, C. F. Basler, J. K. Taubenberger, P. Palese, I. A. Wilson
Structure Of The Uncleaved Human H1 Hemagglutinin From The Extinct 1918 Influenza Virus.
Science V. 303 1866 2004
PubMed-ID: 14764887 | Reference-DOI: 10.1126/SCIENCE.1093373

Molecule 1 - HEMAGGLUTININ
	Chains	:	A, C, E
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PACGP67A
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	RECEPTOR BINDING DOMAIN, HA1 (RESIDUES 11-329)
	Gene	:	HEMAGGLUTININ
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	11320

Molecule 2 - HEMAGGLUTININ
	Chains	:	B, D, F
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Cell Line	:	SF9
	Expression System Common	:	FALL ARMYWORM
	Expression System Plasmid	:	PACGP67A
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Fragment	:	MEMBRANE FUSION DOMAIN, HA2 (RESIDUES 1-175)
	Gene	:	HEMAGGLUTININ
	Organism Scientific	:	INFLUENZA A VIRUS
	Organism Taxid	:	11320

		1	2	3	4	5	6
Asymmetric/Biological Unit	:	A	B	C	D	E	F

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (5, 17)

No.	Name	Count	Type	Full Name
1	BMA	3	Ligand/Ion	BETA-D-MANNOSE
2	MAN	1	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	11	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE
4	NDG	1	Ligand/Ion	2-(ACETYLAMINO)-2-DEOXY-A-D-GLUCOPYRANOSE
5	PO4	1	Ligand/Ion	PHOSPHATE ION

Asymmetric Unit (17, 17)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:20 , PRO C:273 , HIS C:275	BINDING SITE FOR RESIDUE NAG A 1
02	AC2	SOFTWARE	ASN A:34 , THR A:35A	BINDING SITE FOR RESIDUE NAG A 2
03	AC3	SOFTWARE	ASN A:73 , GLU A:94 , ASN A:95 , CYS A:97 , ARG A:224 , NAG A:331	BINDING SITE FOR RESIDUE NAG A 330
04	AC4	SOFTWARE	NAG A:330 , BMA A:332	BINDING SITE FOR RESIDUE NAG A 331
05	AC5	SOFTWARE	NAG A:331	BINDING SITE FOR RESIDUE BMA A 332
06	AC6	SOFTWARE	GLU B:150 , ASN B:154	BINDING SITE FOR RESIDUE NAG B 183
07	AC7	SOFTWARE	ASN C:34	BINDING SITE FOR RESIDUE NAG C 330
08	AC8	SOFTWARE	ASN C:73 , GLU C:94 , ASN C:95 , CYS C:97 , ARG C:224 , NAG C:332	BINDING SITE FOR RESIDUE NAG C 331
09	AC9	SOFTWARE	NAG C:331 , BMA C:333 , MAN C:334	BINDING SITE FOR RESIDUE NAG C 332
10	BC1	SOFTWARE	NAG C:332 , MAN C:334	BINDING SITE FOR RESIDUE BMA C 333
11	BC2	SOFTWARE	NAG C:332 , BMA C:333	BINDING SITE FOR RESIDUE MAN C 334
12	BC3	SOFTWARE	ASN C:289 , SER C:291	BINDING SITE FOR RESIDUE NAG C 335
13	BC4	SOFTWARE	ASN E:34	BINDING SITE FOR RESIDUE NDG E 330
14	BC5	SOFTWARE	ASN E:73 , GLU E:75 , ASN E:95 , CYS E:97 , ARG E:224 , NAG E:332	BINDING SITE FOR RESIDUE NAG E 331
15	BC6	SOFTWARE	ARG E:224 , NAG E:331 , BMA E:333	BINDING SITE FOR RESIDUE NAG E 332
16	BC7	SOFTWARE	NAG E:332	BINDING SITE FOR RESIDUE BMA E 333
17	BC8	SOFTWARE	ARG B:116 , GLU B:120 , LYS B:123 , ARG D:116 , GLU D:120 , LYS D:123 , ARG F:116 , GLU F:120 , LYS F:123	BINDING SITE FOR RESIDUE PO4 B 301

Asymmetric/Biological Unit

No.	Residues
1	A:14	-	B:137
2	A:52	-	A:277
3	A:64	-	A:76
4	A:97	-	A:139
5	A:281	-	A:305
6	B:144	-	B:148
7	C:14	-	D:137
8	C:52	-	C:277
9	C:64	-	C:76
10	C:97	-	C:139
11	C:281	-	C:305
12	D:144	-	D:148
13	E:14	-	F:137
14	E:52	-	E:277
15	E:64	-	E:76
16	E:97	-	E:139
17	E:281	-	E:305
18	F:144	-	F:148

(no "Cis Peptide Bond" information available for 1RD8)

(no "SAP(SNP)/Variant" information available for 1RD8)

(no "PROSITE Motif" information available for 1RD8)

(no "Exon" information available for 1RD8)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:328
 aligned with HEMA_I18A0 | Q9WFX3 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:328
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336        
          HEMA_I18A0     17 ADTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCKLKGIAPLQLGKCNIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAGASSFYRNLLWLTKKGSSYPKLSKSYVNNKGKEVLVLWGVHHPPTGTDQQSLYQNADAYVSVGSSKYNRRFTPEIAARPKVRDQAGRMNYYWTLLEPGDTITFEATGNLIAPWYAFALNRGSGSGIITSDAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVRSTKLRMATGLRNIPSIQSR  344
               SCOP domains d1rd8a_ A: Hemagglutinin                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1rd8A01 A:10-51,A:276-329                 1rd8A02 A:52-275  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1rd8A01 A:10-51,A:276-329                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....ee.......ee...eee.ee......eee......ee....hhhhhhh..hhhhh.........eee...............hhhhhhhhh......eeee..hhhhhh..ee.....eeeeee..eee....eee.ee.......eeeee......eeeeeeeeee..hhhhhhhhhh.....eeeee..eeeee...............eeeeeeeee.....eeeee...eeee.eeeee.......eee....eeeee..ee....ee.....ee......ee...ee......eee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rd8 A   10 EDTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCKLKGIAPLQLGKCNIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAGASSFYRNLLWLTKKGSSYPKLSKSYVNNKGKEVLVLWGVHHPPTGTDQQSLYQNADAYVSVGSSKYNRRFTPEIAARPKVRDQAGRMNYYWTLLEPGDTITFEATGNLIAPWYAFALNRGSGSGIITSDAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVRSTKLRMATGLRNIPSIQSR  329
                                    19|       28|    |  39        49     |  58        68        78    |   87       96A       106       116      125A||     133|      142       152       162       172       182       192       202       212       222       232       242       252       262  |    271       281       291       301       311       321        
                                    19A       28|  35A                 54A                          82A            96A                          125A||     133A                                                                                                                                264A                                                                 
                                               31                                                                                                125B|                                                                                                                                                                                                              
                                                                                                                                                  125C

Chain B from PDB  Type:PROTEIN  Length:175
 aligned with HEMA_I18A0 | Q9WFX3 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:175
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514     
          HEMA_I18A0    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYPKYSEESKLNREEIDG  519
               SCOP domains d1rd8b_ B: Influenza hemagglutinin (stalk)                                                                                                                                      SCOP domains
               CATH domains 1rd8B00 B:1-175  [code=3.90.20.10, no name defined]                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...................eeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rd8 B    1 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYPKYSEESKLNREEIDG  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain C from PDB  Type:PROTEIN  Length:328
 aligned with HEMA_I18A0 | Q9WFX3 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:328
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336        
          HEMA_I18A0     17 ADTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCKLKGIAPLQLGKCNIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAGASSFYRNLLWLTKKGSSYPKLSKSYVNNKGKEVLVLWGVHHPPTGTDQQSLYQNADAYVSVGSSKYNRRFTPEIAARPKVRDQAGRMNYYWTLLEPGDTITFEATGNLIAPWYAFALNRGSGSGIITSDAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVRSTKLRMATGLRNIPSIQSR  344
               SCOP domains d1rd8c_ C: Hemagglutinin                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1rd8C01 C:10-51,C:276-329                 1rd8C02 C:52-275  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1rd8C01 C:10-51,C:276-329                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....ee.......ee...eee.ee......eee......ee....hhhhhhh..hhhhh.........eee...............hhhhhhhhh......eeee..hhhhhh..ee.....eeeeee..eee....eee.ee.......eeeee......eeeeeeeeee..hhhhhhhhhh.....eeeee..eeeee...............eeeeeeeee.....eeeee...eeee.eeeee.......eee....eeeee..eee..eee.....ee......ee...ee......eee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rd8 C   10 EDTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCKLKGIAPLQLGKCNIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAGASSFYRNLLWLTKKGSSYPKLSKSYVNNKGKEVLVLWGVHHPPTGTDQQSLYQNADAYVSVGSSKYNRRFTPEIAARPKVRDQAGRMNYYWTLLEPGDTITFEATGNLIAPWYAFALNRGSGSGIITSDAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVRSTKLRMATGLRNIPSIQSR  329
                                    19|       28|    |  39        49     |  58        68        78    |   87       96A       106       116      125A||     133|      142       152       162       172       182       192       202       212       222       232       242       252       262  |    271       281       291       301       311       321        
                                    19A       28|  35A                 54A                          82A            96A                          125A||     133A                                                                                                                                264A                                                                 
                                               31                                                                                                125B|                                                                                                                                                                                                              
                                                                                                                                                  125C

Chain D from PDB  Type:PROTEIN  Length:175
 aligned with HEMA_I18A0 | Q9WFX3 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:175
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514     
          HEMA_I18A0    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYPKYSEESKLNREEIDG  519
               SCOP domains d1rd8d_ D: Influenza hemagglutinin (stalk)                                                                                                                                      SCOP domains
               CATH domains 1rd8D00 D:1-175  [code=3.90.20.10, no name defined]                                                                                                                             CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...ee..............eeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rd8 D    1 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYPKYSEESKLNREEIDG  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Chain E from PDB  Type:PROTEIN  Length:328
 aligned with HEMA_I18A0 | Q9WFX3 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:328
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336        
          HEMA_I18A0     17 ADTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCKLKGIAPLQLGKCNIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAGASSFYRNLLWLTKKGSSYPKLSKSYVNNKGKEVLVLWGVHHPPTGTDQQSLYQNADAYVSVGSSKYNRRFTPEIAARPKVRDQAGRMNYYWTLLEPGDTITFEATGNLIAPWYAFALNRGSGSGIITSDAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVRSTKLRMATGLRNIPSIQSR  344
               SCOP domains d1rd8e_ E: Hemagglutinin                                                                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains 1rd8E01 E:10-51,E:276-329                 1rd8E02 E:52-275  [code=3.90.209.20, no name defined]                                                                                                                                                                                   1rd8E01 E:10-51,E:276-329                              CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeeee.....ee.......ee...eee.ee......eee......ee....hhhhhhh..hhhhh.........eee...............hhhhhhhhh.......eee..hhhhhh..ee.....eeeeee..eee....eee.ee.......eeeee......eeeeeeeeee..hhhhhhhhhh.....eeeee..eeeee...............eeeeeeeee.....eeeee...eeee.eeeee.......eee....eeeee..ee....ee.....ee......ee...ee......eee............ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rd8 E   10 EDTICIGYHANNSTDTVDTVLEKNVTVTHSVNLLEDSHNGKLCKLKGIAPLQLGKCNIAGWLLGNPECDLLLTASSWSYIVETSNSENGTCYPGDFIDYEELREQLSSVSSFEKFEIFPKTSSWPNHETTKGVTAACSYAGASSFYRNLLWLTKKGSSYPKLSKSYVNNKGKEVLVLWGVHHPPTGTDQQSLYQNADAYVSVGSSKYNRRFTPEIAARPKVRDQAGRMNYYWTLLEPGDTITFEATGNLIAPWYAFALNRGSGSGIITSDAPVHDCNTKCQTPHGAINSSLPFQNIHPVTIGECPKYVRSTKLRMATGLRNIPSIQSR  329
                                    19|       28|    |  39        49     |  58        68        78    |   87       96A       106       116      125A||     133|      142       152       162       172       182       192       202       212       222       232       242       252       262  |    271       281       291       301       311       321        
                                    19A       28|  35A                 54A                          82A            96A                          125A||     133A                                                                                                                                264A                                                                 
                                               31                                                                                                125B|                                                                                                                                                                                                              
                                                                                                                                                  125C

Chain F from PDB  Type:PROTEIN  Length:175
 aligned with HEMA_I18A0 | Q9WFX3 from UniProtKB/Swiss-Prot  Length:566

    Alignment length:175
                                   354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514     
          HEMA_I18A0    345 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYPKYSEESKLNREEIDG  519
               SCOP domains d1rd8f_ F: Influenza hemagglutinin (stalk)                                                                                                                                      SCOP domains
               CATH domains 1rd8F00 F:1-175  [code=3.90.20.10, no name defined]                                                                                                                             CATH domains
           Pfam domains (1) Hemagglutinin-1rd8F01 F:1-175                                                                                                                                                   Pfam domains (1)
           Pfam domains (2) Hemagglutinin-1rd8F02 F:1-175                                                                                                                                                   Pfam domains (2)
           Pfam domains (3) Hemagglutinin-1rd8F03 F:1-175                                                                                                                                                   Pfam domains (3)
           Pfam domains (4) Hemagglutinin-1rd8F04 F:1-175                                                                                                                                                   Pfam domains (4)
           Pfam domains (5) Hemagglutinin-1rd8F05 F:1-175                                                                                                                                                   Pfam domains (5)
           Pfam domains (6) Hemagglutinin-1rd8F06 F:1-175                                                                                                                                                   Pfam domains (6)
         Sec.struct. author ...ee..............eeeeeeeee..eeeeeehhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eee....eeee....hhhhhhhhhh...hhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                1rd8 F    1 GLFGAIAGFIEGGWTGMIDGWYGYHHQNEQGSGYAADQKSTQNAIDGITNKVNSVIEKMNTQFTAVGKEFNNLERRIENLNKKVDDGFLDIWTYNAELLVLLENERTLDFHDSNVRNLYEKVKSQLKNNAKEIGNGCFEFYHKCDDACMESVRNGTYDYPKYSEESKLNREEIDG  175
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: Alpha-Beta Complex (3881)

Topology: Hemagglutinin (Ha1 Chain); Chain: A; domain 1 (59)

Homologous Superfamily: [code=3.90.209.20, no name defined] (59)

Influenza a virus. Organism_taxid: 11320. (1)

1a	1rd8A02	A:52-275
1b	1rd8C02	C:52-275
1c	1rd8E02	E:52-275

Topology: Hemagglutinin Ectodomain; Chain B (70)

Homologous Superfamily: [code=3.90.20.10, no name defined] (69)

Influenza a virus. Organism_taxid: 11320. (1)

2a	1rd8B00	B:1-175
2b	1rd8D00	D:1-175
2c	1rd8F00	F:1-175

Class: Mainly Beta (13760)

Architecture: Ribbon (789)

Topology: Hemagglutinin; Chain A, domain 2 (27)

Homologous Superfamily: Hemagglutinin Chain A, Domain 2 (27)

Influenza a virus. Organism_taxid: 11320. (1)

3a	1rd8A01	A:10-51,A:276-329
3b	1rd8C01	C:10-51,C:276-329
3c	1rd8E01	E:10-51,E:276-329

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F (HEMA_I18A0 | Q9WFX3)

molecular function
	GO:0046789	host cell surface receptor binding	Interacting selectively and non-covalently with a receptor on the host cell surface.
biological process
	GO:0075512	clathrin-dependent endocytosis of virus by host cell	Any clathrin-mediated endocytosis that is involved in the uptake of a virus into a host cell. Begins by invagination of a specific region of the host cell plasma membrane around the bound virus to form a clathrin-coated pit, which then pinches off to form a clathrin-coated endocytic vesicle containing the virus.
	GO:0075509	endocytosis involved in viral entry into host cell	Any endocytosis that is involved in the uptake of a virus into a host cell.
	GO:0039654	fusion of virus membrane with host endosome membrane	Fusion of a virus membrane with a host endosome membrane. Occurs after internalization of the virus through the endosomal pathway, and results in release of the virus contents into the cell.
	GO:0019064	fusion of virus membrane with host plasma membrane	Fusion of a viral membrane with the host cell membrane during viral entry. Results in release of the virion contents into the cytoplasm.
	GO:0039663	membrane fusion involved in viral entry into host cell	Merging of the virion membrane and a host membrane (host plasma membrane or host organelle membrane) that is involved in the uptake of a virus into a host cell.
	GO:0019065	receptor-mediated endocytosis of virus by host cell	Any receptor-mediated endocytosis that is involved in the uptake of a virus into a host cell; successive instances of virus endocytosis result in the accumulation of virus particles within the cell.
	GO:0046718	viral entry into host cell	The process that occurs after viral attachment by which a virus, or viral nucleic acid, breaches the plasma membrane or cell envelope and enters the host cell. The process ends when the viral nucleic acid is released into the host cell cytoplasm.
	GO:0016032	viral process	A multi-organism process in which a virus is a participant. The other participant is the host. Includes infection of a host cell, replication of the viral genome, and assembly of progeny virus particles. In some cases the viral genetic material may integrate into the host genome and only subsequently, under particular circumstances, 'complete' its life cycle.
	GO:0019062	virion attachment to host cell	The process by which a virion protein binds to molecules on the host cellular surface or host cell surface projection.
cellular component
	GO:0033644	host cell membrane	Double layer of lipid molecules as it encloses host cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins. The host is defined as the larger of the organisms involved in a symbiotic interaction.
	GO:0020002	host cell plasma membrane	The plasma membrane surrounding a host cell.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0019031	viral envelope	The lipid bilayer of a virion that surrounds the protein capsid. May also contain glycoproteins.
	GO:0019012	virion	The complete fully infectious extracellular virus particle.
	GO:0055036	virion membrane	The lipid bilayer surrounding a virion.

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	1rd8
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(no "Related Entries Specified in the PDB File" available for 1RD8)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 17)

Sites (17, 17)

SS Bonds (18, 18)

Cis Peptide Bonds (0, 0)

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