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(-) Description

Title :  BULLFROG RED CELL L FERRITIN TARTRATE/MG/PH 5.5
 
Authors :  J. Trikha, E. C. Theil, N. M. Allewell
Date :  04 Aug 95  (Deposition) - 14 Nov 95  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (24x)
Keywords :  Iron Storage (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Trikha, E. C. Theil, N. M. Allewell
High Resolution Crystal Structures Of Amphibian Red-Cell L Ferritin: Potential Roles For Structural Plasticity And Solvation In Function.
J. Mol. Biol. V. 248 949 1995
PubMed-ID: 7760335  |  Reference-DOI: 10.1006/JMBI.1995.0274
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - L FERRITIN
    Cell: RED CELL
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Gene: CDNA
    Expression System Plasmid: PET 3A
    Expression System Strain: PET
    Expression System Taxid: 562
    Expression System Vector Type: PET
    Gene: CDNA
    Mutation: YES
    Organism Common: BULLFROG
    Organism Scientific: RANA CATESBEIANA
    Organism Taxid: 8400

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (24x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1BET1Ligand/IonTRIMETHYL GLYCINE
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1BET24Ligand/IonTRIMETHYL GLYCINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:24 , SER A:27 , TYR A:28 , LYS A:59BINDING SITE FOR RESIDUE BET A 200

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1RCC)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Ser A:131 -Pro A:132

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1RCC)

(-) PROSITE Motifs  (3, 3)

Asymmetric Unit (3, 3)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.FRI3_LITCT7-156  1A:6-155
2FERRITIN_1PS00540 Ferritin iron-binding regions signature 1.FRI3_LITCT58-76  1A:59-75
3FERRITIN_2PS00204 Ferritin iron-binding regions signature 2.FRI3_LITCT123-143  1A:122-142
Biological Unit 1 (3, 72)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FERRITIN_LIKEPS50905 Ferritin-like diiron domain profile.FRI3_LITCT7-156  24A:6-155
2FERRITIN_1PS00540 Ferritin iron-binding regions signature 1.FRI3_LITCT58-76  24A:59-75
3FERRITIN_2PS00204 Ferritin iron-binding regions signature 2.FRI3_LITCT123-143  24A:122-142

(-) Exons   (0, 0)

(no "Exon" information available for 1RCC)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:171
 aligned with FRI3_LITCT | P07797 from UniProtKB/Swiss-Prot  Length:173

    Alignment length:171
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172 
           FRI3_LITCT     3 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSEEEKEHAEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTLG 173
               SCOP domains d1rcca_ A: (Apo)ferritin                                                                                                                                                    SCOP domains
               CATH domains 1rccA00 A:2-172  [code=1.20.1260.10, no name defined]                                                                                                                       CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ----FERRITIN_LIKE  PDB: A:6-155 UniProt: 7-156                                                                                                            ----------------- PROSITE (1)
                PROSITE (2) -------------------------------------------------------FERRITIN_1         ----------------------------------------------FERRITIN_2           ------------------------------ PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1rcc A   2 SQVRQNFHQDCEAGLNRTVNLKFHSSYVYLSMASYFNRDDVALSNFAKFFRERSAAAKAHAEKLIEYQNQRGGRVFLQSVEKPERDDWANGLEALQTALKLQKSVNQALLDLHAVAADKSDPHMTDFLESPYLSESVETIKKLGDHITSLKKLWSSHPGMAEYLFNKHTLG 172
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (1, 1)

Asymmetric Unit
(-)
Class: Mainly Alpha (13335)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1RCC)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A   (FRI3_LITCT | P07797)
molecular function
    GO:0008199    ferric iron binding    Interacting selectively and non-covalently with ferric iron, Fe(III).
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006879    cellular iron ion homeostasis    Any process involved in the maintenance of an internal steady state of iron ions at the level of a cell.
    GO:0006826    iron ion transport    The directed movement of iron (Fe) ions into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
cellular component
    GO:0005623    cell    The basic structural and functional unit of all organisms. Includes the plasma membrane and any external encapsulating structures such as the cell wall and cell envelope.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FRI3_LITCT | P07797: 1rcd 1rce 1rcg 1rci

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