1RBY - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   HUMAN GAR TFASE COMPLEX STRUCTURE WITH 10-(TRIFLUOROACETYL)-5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID AND SUBSTRATE BETA-GAR

Authors :   Y. Zhang, J. Desharnais, D. L. Boger, I. A. Wilson

Date :   03 Nov 03 (Deposition) - 14 Jun 05 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)
Biol. Unit 4: D  (1x)

Keywords :   Protein-Cofactor Analogue Complex, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Zhang, J. Desharnais, D. L. Boger, I. A. Wilson
Human Gar Tfase Complex Structure
To Be Published
PubMed: search
(for further references see the PDB file header)

Molecule 1 - PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.1.2.2
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET22A
	Expression System Strain	:	BL21(DE3)GOLD
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	(RESIDUES 808-1010)
	Gene	:	PURN
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Other Details	:	PART OF TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3
	Synonym	:	GART

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C
Biological Unit 4 (1x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 6)

No.	Name	Count	Type	Full Name
1	GAR	2	Ligand/Ion	GLYCINAMIDE RIBONUCLEOTIDE
2	KEU	4	Ligand/Ion	N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID

Biological Unit 1 (2, 2)

No.	Name	Count	Type	Full Name
1	GAR	1	Ligand/Ion	GLYCINAMIDE RIBONUCLEOTIDE
2	KEU	1	Ligand/Ion	N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID

Biological Unit 2 (2, 2)

No.	Name	Count	Type	Full Name
1	GAR	1	Ligand/Ion	GLYCINAMIDE RIBONUCLEOTIDE
2	KEU	1	Ligand/Ion	N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID

Biological Unit 3 (1, 1)

No.	Name	Count	Type	Full Name
1	GAR	-1	Ligand/Ion	GLYCINAMIDE RIBONUCLEOTIDE
2	KEU	1	Ligand/Ion	N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID

Biological Unit 4 (1, 1)

No.	Name	Count	Type	Full Name
1	GAR	-1	Ligand/Ion	GLYCINAMIDE RIBONUCLEOTIDE
2	KEU	1	Ligand/Ion	N-{4-[(1R)-4-[(2R,4R,5S)-2,4-DIAMINO-6-OXOHEXAHYDROPYRIMIDIN-5-YL]-1-(2,2,2-TRIFLUORO-1,1-DIHYDROXYETHYL)BUTYL]BENZOYL}-D-GLUTAMIC ACID

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ARG A:64 , LEU A:85 , MET A:89 , ARG A:90 , ILE A:91 , LEU A:92 , VAL A:97 , ASN A:106 , HIS A:108 , PRO A:109 , GLY A:117 , SER A:118 , VAL A:139 , ALA A:140 , GLU A:141 , ASP A:142 , VAL A:143 , ASP A:144 , GAR A:523 , HOH A:544 , HOH A:551 , HOH A:552 , HOH A:556 , HOH A:561 , HOH A:571	BINDING SITE FOR RESIDUE KEU A 510
2	AC2	SOFTWARE	ARG B:64 , LEU B:85 , MET B:89 , ARG B:90 , ILE B:91 , LEU B:92 , VAL B:97 , ASN B:106 , HIS B:108 , PRO B:109 , GLY B:117 , SER B:118 , VAL B:139 , ALA B:140 , GLU B:141 , ASP B:142 , VAL B:143 , ASP B:144 , GAR B:623 , HOH B:625 , HOH B:644 , HOH B:645 , HOH B:666 , HOH B:674 , HOH B:718 , HOH C:744	BINDING SITE FOR RESIDUE KEU B 610
3	AC3	SOFTWARE	ARG C:64 , MET C:89 , ARG C:90 , ILE C:91 , LEU C:92 , ASN C:106 , HIS C:108 , PRO C:109 , GLY C:117 , SER C:118 , VAL C:139 , ALA C:140 , GLU C:141 , VAL C:143 , ASP C:144 , HOH C:713 , HOH C:787 , HOH C:788	BINDING SITE FOR RESIDUE KEU C 710
4	AC4	SOFTWARE	ARG D:64 , MET D:89 , ARG D:90 , ILE D:91 , LEU D:92 , VAL D:97 , ASN D:106 , HIS D:108 , PRO D:109 , GLY D:117 , SER D:118 , VAL D:139 , ALA D:140 , GLU D:141 , VAL D:143 , ASP D:144 , HOH D:821 , HOH D:867 , HOH D:896	BINDING SITE FOR RESIDUE KEU D 810
5	AC5	SOFTWARE	THR A:10 , GLY A:11 , SER A:12 , ASN A:13 , LEU A:85 , GLY A:87 , PHE A:88 , MET A:89 , ASN A:106 , ILE A:107 , PRO A:109 , LYS A:170 , GLU A:173 , KEU A:510 , HOH A:532 , HOH A:536 , HOH A:574	BINDING SITE FOR RESIDUE GAR A 523
6	AC6	SOFTWARE	THR B:10 , GLY B:11 , SER B:12 , ASN B:13 , LEU B:85 , GLY B:87 , PHE B:88 , MET B:89 , ASN B:106 , ILE B:107 , PRO B:109 , LYS B:170 , GLU B:173 , KEU B:610 , HOH B:631 , HOH B:642 , HOH B:650	BINDING SITE FOR RESIDUE GAR B 623

(no "SS Bond" information available for 1RBY)

Asymmetric Unit

No.	Residues
1	Leu A:112	-	Pro A:113
2	Leu B:112	-	Pro B:113
3	Leu C:112	-	Pro C:113
4	Leu D:112	-	Pro D:113

(no "SAP(SNP)/Variant" information available for 1RBY)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GART	PS00373	Phosphoribosylglycinamide formyltransferase active site.	PUR2_HUMAN	940-963	4	A:133-156 B:133-156 C:133-156 D:133-156

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GART	PS00373	Phosphoribosylglycinamide formyltransferase active site.	PUR2_HUMAN	940-963	1	A:133-156 - - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GART	PS00373	Phosphoribosylglycinamide formyltransferase active site.	PUR2_HUMAN	940-963	1	- B:133-156 - -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GART	PS00373	Phosphoribosylglycinamide formyltransferase active site.	PUR2_HUMAN	940-963	1	- - C:133-156 -

Biological Unit 4 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GART	PS00373	Phosphoribosylglycinamide formyltransferase active site.	PUR2_HUMAN	940-963	1	- - - D:133-156

Asymmetric Unit (5, 20)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.2b	ENST00000381839	2b	ENSE00001490224	chr21:34915167-34914966	202	PUR2_HUMAN	-	0	0	-	-
1.4a	ENST00000381839	4a	ENSE00002148759	chr21:34911662-34911477	186	PUR2_HUMAN	1-49	49	0	-	-
1.5	ENST00000381839	5	ENSE00001043425	chr21:34907626-34907531	96	PUR2_HUMAN	49-81	33	0	-	-
1.6b	ENST00000381839	6b	ENSE00002174056	chr21:34907059-34906885	175	PUR2_HUMAN	81-139	59	0	-	-
1.7a	ENST00000381839	7a	ENSE00001043434	chr21:34904762-34904651	112	PUR2_HUMAN	139-176	38	0	-	-
1.8a	ENST00000381839	8a	ENSE00001043411	chr21:34903863-34903795	69	PUR2_HUMAN	177-199	23	0	-	-
1.9c	ENST00000381839	9c	ENSE00002197902	chr21:34903190-34903065	126	PUR2_HUMAN	200-241	42	0	-	-
1.11	ENST00000381839	11	ENSE00001751727	chr21:34901243-34901156	88	PUR2_HUMAN	242-271	30	0	-	-
1.12c	ENST00000381839	12c	ENSE00001753916	chr21:34900910-34900825	86	PUR2_HUMAN	271-299	29	0	-	-
1.12f	ENST00000381839	12f	ENSE00001621771	chr21:34900641-34900473	169	PUR2_HUMAN	300-356	57	0	-	-
1.13a	ENST00000381839	13a	ENSE00001777765	chr21:34897307-34897076	232	PUR2_HUMAN	356-433	78	0	-	-
1.14b	ENST00000381839	14b	ENSE00001646436	chr21:34894589-34894495	95	PUR2_HUMAN	433-465	33	0	-	-
1.15	ENST00000381839	15	ENSE00001653663	chr21:34893322-34893213	110	PUR2_HUMAN	465-501	37	0	-	-
1.16b	ENST00000381839	16b	ENSE00001638032	chr21:34892869-34892671	199	PUR2_HUMAN	502-568	67	0	-	-
1.17	ENST00000381839	17	ENSE00001683013	chr21:34889915-34889664	252	PUR2_HUMAN	568-652	85	0	-	-
1.18	ENST00000381839	18	ENSE00001681935	chr21:34889448-34889296	153	PUR2_HUMAN	652-703	52	0	-	-
1.19a	ENST00000381839	19a	ENSE00001696316	chr21:34883765-34883559	207	PUR2_HUMAN	703-772	70	0	-	-
1.20b	ENST00000381839	20b	ENSE00001689617	chr21:34882227-34882090	138	PUR2_HUMAN	772-818	47	4	A:1-11 B:1-11 C:1-11 D:1-11	11 11 11 11
1.21b	ENST00000381839	21b	ENSE00001632330	chr21:34878411-34878281	131	PUR2_HUMAN	818-861	44	4	A:11-54 B:11-54 C:11-54 D:11-54	44 44 44 44
1.22	ENST00000381839	22	ENSE00001656872	chr21:34878009-34877868	142	PUR2_HUMAN	862-909	48	4	A:55-102 B:55-102 C:55-102 D:55-102	48 48 48 48
1.23	ENST00000381839	23	ENSE00001636975	chr21:34876834-34876719	116	PUR2_HUMAN	909-947	39	4	A:102-140 B:102-140 C:102-140 D:102-140	39 39 39 39
1.24b	ENST00000381839	24b	ENSE00001736479	chr21:34876622-34876238	385	PUR2_HUMAN	948-1010	63	4	A:141-200 B:141-200 C:141-200 D:141-200	60 60 60 60

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:200
 aligned with PUR2_HUMAN | P22102 from UniProtKB/Swiss-Prot  Length:1010

    Alignment length:200
                                   817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007
          PUR2_HUMAN    808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV 1007
               SCOP domains d1rbya_ A: Glycinamide ribonucleotide transformylase, GART                                                                                                                                               SCOP domains
               CATH domains 1rbyA00 A:1-200  [code=3.40.50.170, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhh......eeeeeee....hhhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeee..........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------GART  PDB: A:133-156    -------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.20b -------------------------------------------Exon 1.22  PDB: A:55-102 UniProt: 862-909       --------------------------------------Exon 1.24b  PDB: A:141-200 UniProt: 948-1010 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.21b  PDB: A:11-54 UniProt: 818-861   -----------------------------------------------Exon 1.23  PDB: A:102-140              ------------------------------------------------------------ Transcript 1 (2)
                1rby A    1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV  200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain B from PDB  Type:PROTEIN  Length:200
 aligned with PUR2_HUMAN | P22102 from UniProtKB/Swiss-Prot  Length:1010

    Alignment length:200
                                   817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007
          PUR2_HUMAN    808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV 1007
               SCOP domains d1rbyb_ B: Glycinamide ribonucleotide transformylase, GART                                                                                                                                               SCOP domains
               CATH domains 1rbyB00 B:1-200  [code=3.40.50.170, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...hhhhhhhhhhhh......eeeeeee....hhhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeee..........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------GART  PDB: B:133-156    -------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.20b -------------------------------------------Exon 1.22  PDB: B:55-102 UniProt: 862-909       --------------------------------------Exon 1.24b  PDB: B:141-200 UniProt: 948-1010 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.21b  PDB: B:11-54 UniProt: 818-861   -----------------------------------------------Exon 1.23  PDB: B:102-140              ------------------------------------------------------------ Transcript 1 (2)
                1rby B    1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV  200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain C from PDB  Type:PROTEIN  Length:200
 aligned with PUR2_HUMAN | P22102 from UniProtKB/Swiss-Prot  Length:1010

    Alignment length:200
                                   817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007
          PUR2_HUMAN    808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV 1007
               SCOP domains d1rbyc_ C: Glycinamide ribonucleotide transformylase, GART                                                                                                                                               SCOP domains
               CATH domains 1rbyC00 C:1-200  [code=3.40.50.170, no name defined]                                                                                                                                                     CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.....hhhhhhhhhh......eeeeeee....hhhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeee..........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------GART  PDB: C:133-156    -------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.20b -------------------------------------------Exon 1.22  PDB: C:55-102 UniProt: 862-909       --------------------------------------Exon 1.24b  PDB: C:141-200 UniProt: 948-1010 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.21b  PDB: C:11-54 UniProt: 818-861   -----------------------------------------------Exon 1.23  PDB: C:102-140              ------------------------------------------------------------ Transcript 1 (2)
                1rby C    1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV  200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Chain D from PDB  Type:PROTEIN  Length:200
 aligned with PUR2_HUMAN | P22102 from UniProtKB/Swiss-Prot  Length:1010

    Alignment length:200
                                   817       827       837       847       857       867       877       887       897       907       917       927       937       947       957       967       977       987       997      1007
          PUR2_HUMAN    808 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV 1007
               SCOP domains d1rbyd_ D: Glycinamide ribonucleotide transformylase, GART                                                                                                                                               SCOP domains
               CATH domains 1rbyD00 D:1-200  [code=3.40.50.170, no name defined]                                                                                                                                                     CATH domains
           Pfam domains (1) Formyl_trans_N-1rbyD01 D:1-181                                                                                                                                                       ------------------- Pfam domains (1)
           Pfam domains (2) Formyl_trans_N-1rbyD02 D:1-181                                                                                                                                                       ------------------- Pfam domains (2)
           Pfam domains (3) Formyl_trans_N-1rbyD03 D:1-181                                                                                                                                                       ------------------- Pfam domains (3)
           Pfam domains (4) Formyl_trans_N-1rbyD04 D:1-181                                                                                                                                                       ------------------- Pfam domains (4)
         Sec.struct. author .eeeeee.....hhhhhhhhhh......eeeeeee....hhhhhhhhhh...eee.hhhhh.hhhhhhhhhhhhhhhh...eeee.......hhhhhhhh...eeeee..........hhhhhhhhhh..eeeeeeee.........eeeeeeee.....hhhhhhhhhhhhhhhhhhhhhhhhhh..eee.....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------GART  PDB: D:133-156    -------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.20b -------------------------------------------Exon 1.22  PDB: D:55-102 UniProt: 862-909       --------------------------------------Exon 1.24b  PDB: D:141-200 UniProt: 948-1010 [INCOMPLETE]    Transcript 1 (1)
           Transcript 1 (2) ----------Exon 1.21b  PDB: D:11-54 UniProt: 818-861   -----------------------------------------------Exon 1.23  PDB: D:102-140              ------------------------------------------------------------ Transcript 1 (2)
                1rby D    1 ARVAVLISGTGSNLQALIDSTREPNSSAQIDIVISNKAAVAGLDKAERAGIPTRVINHKLYKNRVEFDSAIDLVLEEFSIDIVCLAGFMRILSGPFVQKWNGKMLNIHPSLLPSFKGSNAHEQALETGVTVTGCTVHFVAEDVDAGQIILQEAVPVKRGDTVATLSERVKLAEHKIFPAALQLVASGTVQLGENGKICWV  200
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: Formyltransferase (42)

Superfamily: Formyltransferase (42)

Family: Formyltransferase (34)

Protein domain: Glycinamide ribonucleotide transformylase, GART (24)

Human (Homo sapiens) [TaxId: 9606] (15)

1a	d1rbya_	A:
1b	d1rbyb_	B:
1c	d1rbyc_	C:
1d	d1rbyd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Rossmann fold (7312)

Homologous Superfamily: [code=3.40.50.170, no name defined] (28)

Human (Homo sapiens) (14)

1a	1rbyA00	A:1-200
1b	1rbyB00	B:1-200
1c	1rbyC00	C:1-200
1d	1rbyD00	D:1-200

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Formyl_trans_N] (25)

Family: Formyl_trans_N (25)

Homo sapiens (Human) (11)

1a	Formyl_trans_N-1rbyD01	D:1-181
1b	Formyl_trans_N-1rbyD02	D:1-181
1c	Formyl_trans_N-1rbyD03	D:1-181
1d	Formyl_trans_N-1rbyD04	D:1-181

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (PUR2_HUMAN | P22102)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0016742	hydroxymethyl-, formyl- and related transferase activity	Catalysis of the transfer of a hydroxymethyl- or formyl group from one compound (donor) to another (acceptor).
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0004637	phosphoribosylamine-glycine ligase activity	Catalysis of the reaction: 5-phospho-D-ribosylamine + ATP + glycine = N(1)-(5-phospho-D-ribosyl)glycinamide + ADP + 2 H(+) + phosphate.
	GO:0004641	phosphoribosylformylglycinamidine cyclo-ligase activity	Catalysis of the reaction: 2-(formamido)-N(1)-(5-phospho-D-ribosyl)acetamidine + ATP = 5-amino-1-(5-phospho-D-ribosyl)imidazole + ADP + 2 H(+) + phosphate.
	GO:0004644	phosphoribosylglycinamide formyltransferase activity	Catalysis of the reaction: 10-formyltetrahydrofolate + N1-(5-phospho-D-ribosyl)glycinamide = tetrahydrofolate + N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0006189	'de novo' IMP biosynthetic process	The chemical reactions and pathways resulting in the formation of IMP, inosine monophosphate, by the stepwise assembly of a purine ring on ribose 5-phosphate.
	GO:0009058	biosynthetic process	The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
	GO:0003360	brainstem development	The progression of the brainstem from its formation to the mature structure. The brainstem is the part of the brain that connects the brain with the spinal cord.
	GO:0021549	cerebellum development	The process whose specific outcome is the progression of the cerebellum over time, from its formation to the mature structure. The cerebellum is the portion of the brain in the back of the head between the cerebrum and the pons. In mice, the cerebellum controls balance for walking and standing, modulates the force and range of movement and is involved in the learning of motor skills.
	GO:0021987	cerebral cortex development	The progression of the cerebral cortex over time from its initial formation until its mature state. The cerebral cortex is the outer layered region of the telencephalon.
	GO:0006544	glycine metabolic process	The chemical reactions and pathways involving glycine, aminoethanoic acid.
	GO:0008152	metabolic process	The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
	GO:0009113	purine nucleobase biosynthetic process	The chemical reactions and pathways resulting in the formation of purine nucleobases, one of the two classes of nitrogen-containing ring compounds found in DNA and RNA, which include adenine and guanine.
	GO:0006164	purine nucleotide biosynthetic process	The chemical reactions and pathways resulting in the formation of a purine nucleotide, a compound consisting of nucleoside (a purine base linked to a deoxyribose or ribose sugar) esterified with a phosphate group at either the 3' or 5'-hydroxyl group of the sugar.
	GO:0009168	purine ribonucleoside monophosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of purine ribonucleoside monophosphate, a compound consisting of a purine base linked to a ribose sugar esterified with phosphate on the sugar.
	GO:0010035	response to inorganic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an inorganic substance stimulus.
	GO:0010033	response to organic substance	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an organic substance stimulus.
	GO:0009156	ribonucleoside monophosphate biosynthetic process	The chemical reactions and pathways resulting in the formation of a ribonucleoside monophosphate, a compound consisting of a nucleobase linked to a ribose sugar esterified with phosphate on the sugar.
	GO:0046654	tetrahydrofolate biosynthetic process	The chemical reactions and pathways resulting in the formation of tetrahydrofolate, 5,6,7,8-tetrahydrofolic acid, a folate derivative bearing additional hydrogens on the pterin group.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

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		Leu B:112 - Pro B:113	[ RasMol ]
		Leu C:112 - Pro C:113	[ RasMol ]
		Leu D:112 - Pro D:113	[ RasMol ]

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	1rby
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	PUR2_HUMAN \| P22102
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	2.1.2.2
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1mej	APO HUMAN GAR TFASE STRUCTURE AT PH 8.5
1meo	APO HUMAN GAR TFASE STRUCTURE AT PH 4.2
1njs	HUMAN GAR TFASE COMPLEX STRUCTURE WITH 10-(TRIFLUOROACETYL) -5,10-DIDEAZAACYCLIC-5,6,7,8-TETRAHYDROFOLIC ACID AT PHYSIOLOGICAL PH
1rbm
1rbq
1rbz
1rc0
1rc1

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 6)

Sites (6, 6)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 4)

Exons (5, 20)

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SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (1, 4)

Gene Ontology (27, 27)

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