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(-) Description

Title :  JAMM: A METALLOPROTEASE-LIKE ZINC SITE IN THE PROTEASOME AND SIGNALOSOME
 
Authors :  X. I. Ambroggio, D. C. Rees, R. J. Deshaies
Date :  13 Oct 03  (Deposition) - 25 Nov 03  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Jamm, Structural Genomics, Proteasome, Signalosome, Jab1, Mpn, Mov34, Csn5, Rpn11, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  X. I. Ambroggio, D. C. Rees, R. J. Deshaies
Jamm: A Metalloprotease-Like Zinc Site In The Proteasome An Signalosome.
Plos Biol. V. 2 E2 2004
PubMed-ID: 14737182  |  Reference-DOI: 10.1371/JOURNAL.PBIO.0020002

(-) Compounds

Molecule 1 - AFJAMM
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: AF2198
    Organism Scientific: ARCHAEOGLOBUS FULGIDUS
    Organism Taxid: 224325
    Strain: DSM 4304

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1ZN-1Ligand/IonZINC ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:67 , HIS A:69 , SER A:77 , ASP A:80BINDING SITE FOR RESIDUE ZN A 122
2AC2SOFTWAREHIS B:67 , HIS B:69 , SER B:77 , ASP B:80 , HOH B:141BINDING SITE FOR RESIDUE ZN B 122

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1R5X)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1His A:19 -Pro A:20
2Tyr A:96 -Pro A:97
3His B:19 -Pro B:20
4Tyr B:96 -Pro B:97

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R5X)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1R5X)

(-) Exons   (0, 0)

(no "Exon" information available for 1R5X)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:103
 aligned with O28085_ARCFU | O28085 from UniProtKB/TrEMBL  Length:121

    Alignment length:121
                              1                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118 
         O28085_ARCFU     - --MKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPFVSGSVSAVIHLDMLPIGMKVFGTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEVVE 119
               SCOP domains d1r5xa_ A: Hypothetical protein AF2198                                                                                    SCOP domains
               CATH domains 1r5xA00 A:-1-119 Cytidine Deaminase, domain                   2                                                           CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eehhhhhhhhhhhhhhhh....eeeeeee..eeeeeee..------------------....eeeeee.......hhhhhhhh.....eeeeee.......eeee.....ee..ee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r5x A  -1 TLMKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLP------------------MKVFGTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEVVE 119
                                     8        18        28        38  |      -         - |      68        78        88        98       108       118 
                                                                     41                 60                                                           


Chain B from PDB  Type:PROTEIN  Length:103
 aligned with O28085_ARCFU | O28085 from UniProtKB/TrEMBL  Length:121

    Alignment length:121
                              1                                                                                                                      
                              |      8        18        28        38        48        58        68        78        88        98       108       118 
         O28085_ARCFU     - --MKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLPFVSGSVSAVIHLDMLPIGMKVFGTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEVVE 119
               SCOP domains d1r5xb_ B: Hypothetical protein AF2198                                                                                    SCOP domains
               CATH domains 1r5xB00 B:-1-119 Cytidine Deaminase, domain                   2                                                           CATH domains
           Pfam domains (1) -----Prok-JAB-1r5xB01 B:4-106                                                                               ------------- Pfam domains (1)
           Pfam domains (2) -----Prok-JAB-1r5xB02 B:4-106                                                                               ------------- Pfam domains (2)
         Sec.struct. author ...eeehhhhhhhhhhhhhhh....eeeeeee..eeeeeee..------------------....eeeeee.......hhhhhhhh.....eeeeee.......eeee.....ee..eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 1r5x B  -1 TLMKISRGLLKTILEAAKSAHPDEFIALLSGSKDVMDELIFLP------------------MKVFGTVHSHPSPSCRPSEEDLSLFTRFGKYHIIVCYPYDENSWKCYNRKGEEVELEVVE 119
                                     8        18        28        38  |      -         - |      68        78        88        98       108       118 
                                                                     41                 60
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric Unit
(-)
Clan: JAB (8)

(-) Gene Ontology  (1, 1)

Asymmetric Unit(hide GO term definitions)
Chain A,B   (O28085_ARCFU | O28085)
molecular function
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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 Related Entries

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        O28085_ARCFU | O28085: 1oi0

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