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(-) Description

Title :  THE CRYSTAL STRUCTURE OF THE CARBOHYDRATE RECOGNITION DOMAIN OF THE GLYCOPROTEIN SORTING RECEPTOR P58/ERGIC-53 REVEALS A NOVEL METAL BINDING SITE AND CONFORMATIONAL CHANGES ASSOCIATED WITH CALCIUM ION BINDING
 
Authors :  L. M. Velloso, K. Svensson, R. F. Pettersson, Y. Lindqvist
Date :  25 Sep 03  (Deposition) - 16 Dec 03  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.40
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Beta-Sheet, Calcium-Binding, Lectin, Mammalian, Endoplasmic Reticulum, Sugar Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  L. M. Velloso, K. Svensson, R. F. Pettersson, Y. Lindqvist
The Crystal Structure Of The Carbohydrate-Recognition Domain Of The Glycoprotein Sorting Receptor P58/Ergic-53 Reveals An Unpredicted Metal-Binding Site And Conformational Changes Associated With Calcium Ion Binding.
J. Mol. Biol. V. 334 845 2003
PubMed-ID: 14643651  |  Reference-DOI: 10.1016/J.JMB.2003.10.031
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - ERGIC-53 PROTEIN
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemSPODOPTERA FRUGIPERDA
    Expression System Cell LineSF9
    Expression System CommonFALL ARMYWORM
    Expression System PlasmidPFASTBAC
    Expression System Taxid7108
    Expression System Vector TypeBACULOVIRUS
    GeneLMAN1 OR ERGIC53
    Organism CommonNORWAY RAT
    Organism ScientificRATTUS NORVEGICUS
    Organism Taxid10116
    SynonymER-GOLGI INTERMEDIATE COMPARTMENT 53 KDA PROTEIN, LECTIN, MANNOSE-BINDING 1, P58

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 8)

Asymmetric Unit (1, 8)
No.NameCountTypeFull Name
1CA8Ligand/IonCALCIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 3 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
Biological Unit 4 (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:160 , PHE A:162 , ASN A:164 , ASP A:189 , HOH A:303 , HOH A:308BINDING SITE FOR RESIDUE CA A 285
2AC2SOFTWAREASP A:163 , ASP A:165 , ASN A:169 , ASN A:170 , ASP A:189 , HOH A:297 , HOH A:329BINDING SITE FOR RESIDUE CA A 286
3AC3SOFTWAREASP B:160 , PHE B:162 , ASN B:164 , ASP B:189 , HOH B:332 , HOH B:341BINDING SITE FOR RESIDUE CA B 310
4AC4SOFTWAREASP B:163 , ASP B:165 , ASN B:169 , ASN B:170 , ASP B:189BINDING SITE FOR RESIDUE CA B 315
5AC5SOFTWAREASP C:160 , PHE C:162 , ASN C:164 , ASP C:189 , HOH C:426BINDING SITE FOR RESIDUE CA C 410
6AC6SOFTWAREASP C:163 , ASP C:165 , ASN C:169 , ASN C:170 , ASP C:189 , HOH C:429BINDING SITE FOR RESIDUE CA C 415
7AC7SOFTWAREASP D:160 , PHE D:162 , ASN D:164 , ASP D:189 , HOH D:518BINDING SITE FOR RESIDUE CA D 510
8AC8SOFTWAREASP D:163 , ASP D:165 , ASN D:169 , ASN D:170 , ASP D:189 , HOH D:529BINDING SITE FOR RESIDUE CA D 515

(-) SS Bonds  (4, 4)

Asymmetric Unit
No.Residues
1A:198 -A:238
2B:198 -B:238
3C:198 -C:238
4D:198 -D:238

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Gly A:62 -Pro A:63
2Ala A:128 -Asp A:129
3Asn A:170 -Pro A:171
4Gly B:62 -Pro B:63
5Ala B:128 -Asp B:129
6Asn B:170 -Pro B:171
7Gly C:62 -Pro C:63
8Ala C:128 -Asp C:129
9Asn C:170 -Pro C:171
10Gly D:62 -Pro D:63
11Ala D:128 -Asp D:129
12Asn D:170 -Pro D:171

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1R1Z)

(-) PROSITE Motifs  (1, 4)

Asymmetric Unit (1, 4)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LECTIN_LIKEPS51328 L-type lectin-like (leguminous) domain profile.LMAN1_RAT52-275
 
 
 
  4A:52-275
B:52-275
C:52-275
D:52-275
Biological Unit 1 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LECTIN_LIKEPS51328 L-type lectin-like (leguminous) domain profile.LMAN1_RAT52-275
 
 
 
  1A:52-275
-
-
-
Biological Unit 2 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LECTIN_LIKEPS51328 L-type lectin-like (leguminous) domain profile.LMAN1_RAT52-275
 
 
 
  1-
B:52-275
-
-
Biological Unit 3 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LECTIN_LIKEPS51328 L-type lectin-like (leguminous) domain profile.LMAN1_RAT52-275
 
 
 
  1-
-
C:52-275
-
Biological Unit 4 (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1L_LECTIN_LIKEPS51328 L-type lectin-like (leguminous) domain profile.LMAN1_RAT52-275
 
 
 
  1-
-
-
D:52-275

(-) Exons   (0, 0)

(no "Exon" information available for 1R1Z)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:247
 aligned with LMAN1_RAT | Q62902 from UniProtKB/Swiss-Prot  Length:517

    Alignment length:252
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
            LMAN1_RAT    26 QFVGSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
               SCOP domains d1r1za_ A: Car  bohydr   ate-recognition domain of P58/ERGIC-53                                                                                                                                                                                              SCOP domains
               CATH domains 1r1zA00 A:28-2  77  [c   ode=2.60.120.200, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh--hhhhhh---.eee.hhhhee.............eeeee..ee....eeee......eeeeee.......eeeeeeeeeee........eeeeeee................eeeeeeee...........eeeeeeee.....hhhhh......eee..........eeeeeeee..eeeeeee..........eeeeee.........eeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------L_LECTIN_LIKE  PDB: A:52-275 UniProt: 52-275                                                                                                                                                                                    -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r1z A  28 HHHHSSGLVPRGSH--MAGTQA---HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
                                    37   |  | 45 |   |  55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
                                        41 42   47  51                                                                                                                                                                                                                                  

Chain B from PDB  Type:PROTEIN  Length:247
 aligned with LMAN1_RAT | Q62902 from UniProtKB/Swiss-Prot  Length:517

    Alignment length:252
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
            LMAN1_RAT    26 QFVGSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
               SCOP domains d1r1zb_ B: Car  bohydr   ate-recognition domain of P58/ERGIC-53                                                                                                                                                                                              SCOP domains
               CATH domains 1r1zB00 B:25-2  77  [c   ode=2.60.120.200, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh--hhhhhh---.eee.hhhhee.............eeeee..ee....eeee......eeeeee.......eeeeeeeeeee........eeeeeee................eeeeeeee...........eeeeeeee.....hhhhh......eeee.........eeeeeeee..eeeeeee..........eeeeee.........eeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------L_LECTIN_LIKE  PDB: B:52-275 UniProt: 52-275                                                                                                                                                                                    -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r1z B  25 HHHHSSGLVPRGSH--MAGTQA---HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
                                    34   |  | 42 |   |  55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
                                        38 39   44  51                                                                                                                                                                                                                                  

Chain C from PDB  Type:PROTEIN  Length:247
 aligned with LMAN1_RAT | Q62902 from UniProtKB/Swiss-Prot  Length:517

    Alignment length:252
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
            LMAN1_RAT    26 QFVGSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
               SCOP domains d1r1zc_ C: Car  bohydr   ate-recognition domain of P58/ERGIC-53                                                                                                                                                                                              SCOP domains
               CATH domains 1r1zC00 C:25-2  77  [c   ode=2.60.120.200, no name defined]                                                                                                                                                                                                  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhh--hhhhhh---.eee.hhhhee.............eeeee..ee....eeee......eeeeee.......eeeeeeeeeee........eeeeeee................eeeeeeee...........eeeeeeee.....hhhhh......eee..........eeeeeeee..eeeeeee..........eeeeee.........eeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------L_LECTIN_LIKE  PDB: C:52-275 UniProt: 52-275                                                                                                                                                                                    -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r1z C  25 HHHHSSGLVPRGSH--MAGTQA---HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
                                    34   |  | 42 |   |  55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
                                        38 39   44  51                                                                                                                                                                                                                                  

Chain D from PDB  Type:PROTEIN  Length:247
 aligned with LMAN1_RAT | Q62902 from UniProtKB/Swiss-Prot  Length:517

    Alignment length:252
                                    35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
            LMAN1_RAT    26 QFVGSDGMGGDAAAPGAAGTQAELPHRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
               SCOP domains d1r1zd_ D: Car  bohydr   ate-recognition domain of P58/ERGIC-53                                                                                                                                                                                              SCOP domains
               CATH domains 1r1zD00 D:25-2  77  [c   ode=2.60.120.200, no name defined]                                                                                                                                                                                                  CATH domains
           Pfam domains (1) --------------------------Lectin_leg-like-1r1zD01 D:52-277                                                                                                                                                                                                   Pfam domains (1)
           Pfam domains (2) --------------------------Lectin_leg-like-1r1zD02 D:52-277                                                                                                                                                                                                   Pfam domains (2)
           Pfam domains (3) --------------------------Lectin_leg-like-1r1zD03 D:52-277                                                                                                                                                                                                   Pfam domains (3)
           Pfam domains (4) --------------------------Lectin_leg-like-1r1zD04 D:52-277                                                                                                                                                                                                   Pfam domains (4)
         Sec.struct. author .......hhhhhhh--hhhhhh---.eee.hhhhee.............eeeee..ee....eeee......eeeeee.......eeeeeeeeeee........eeeeeee................eeeeeeee...........eeeeeeee.....hhhhh......eeee.........eeeeeeee..eeeeeee..........eeeeee.........eeeeeee......eeeeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------L_LECTIN_LIKE  PDB: D:52-275 UniProt: 52-275                                                                                                                                                                                    -- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 1r1z D  25 HHHHSSGLVPRGSH--MAGTQA---HRRFEYKYSFKGPHLVQSDGTVPFWAHAGNAIPSADQIRIAPSLKSQRGSVWTKTKAAFENWEVEVTFRVTGRGRIGADGLAIWYTENQGLDGPVFGSADMWNGVGIFFDSFDNDGKKNNPAIVVVGNNGQINYDHQNDGATQALASCQRDFRNKPYPVRAKITYYQKTLTVMINNGFTPDKNDYEFCAKVENMVIPTQGHFGISAATGGLADDHDVLSFLTFQLTE 277
                                    34   |  | 42 |   |  55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275  
                                        38 39   44  51                                                                                                                                                                                                                                  

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (1, 4)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 4)

Asymmetric Unit

(-) Gene Ontology  (18, 18)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (LMAN1_RAT | Q62902)
molecular function
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0030246    carbohydrate binding    Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0005537    mannose binding    Interacting selectively and non-covalently with mannose, a monosaccharide hexose, stereoisomeric with glucose, that occurs naturally only in polymerized forms called mannans.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
biological process
    GO:0006888    ER to Golgi vesicle-mediated transport    The directed movement of substances from the endoplasmic reticulum (ER) to the Golgi, mediated by COP II vesicles. Small COP II coated vesicles form from the ER and then fuse directly with the cis-Golgi. Larger structures are transported along microtubules to the cis-Golgi.
    GO:0015031    protein transport    The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
    GO:0006810    transport    The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
    GO:0016192    vesicle-mediated transport    A cellular transport process in which transported substances are moved in membrane-bounded vesicles; transported substances are enclosed in the vesicle lumen or located in the vesicle membrane. The process begins with a step that directs a substance to the forming vesicle, and includes vesicle budding and coating. Vesicles are then targeted to, and fuse with, an acceptor membrane.
cellular component
    GO:0005794    Golgi apparatus    A compound membranous cytoplasmic organelle of eukaryotic cells, consisting of flattened, ribosome-free vesicles arranged in a more or less regular stack. The Golgi apparatus differs from the endoplasmic reticulum in often having slightly thicker membranes, appearing in sections as a characteristic shallow semicircle so that the convex side (cis or entry face) abuts the endoplasmic reticulum, secretory vesicles emerging from the concave side (trans or exit face). In vertebrate cells there is usually one such organelle, while in invertebrates and plants, where they are known usually as dictyosomes, there may be several scattered in the cytoplasm. The Golgi apparatus processes proteins produced on the ribosomes of the rough endoplasmic reticulum; such processing includes modification of the core oligosaccharides of glycoproteins, and the sorting and packaging of proteins for transport to a variety of cellular locations. Three different regions of the Golgi are now recognized both in terms of structure and function: cis, in the vicinity of the cis face, trans, in the vicinity of the trans face, and medial, lying between the cis and trans regions.
    GO:0000139    Golgi membrane    The lipid bilayer surrounding any of the compartments of the Golgi apparatus.
    GO:0005783    endoplasmic reticulum    The irregular network of unit membranes, visible only by electron microscopy, that occurs in the cytoplasm of many eukaryotic cells. The membranes form a complex meshwork of tubular channels, which are often expanded into slitlike cavities called cisternae. The ER takes two forms, rough (or granular), with ribosomes adhering to the outer surface, and smooth (with no ribosomes attached).
    GO:0005789    endoplasmic reticulum membrane    The lipid bilayer surrounding the endoplasmic reticulum.
    GO:0005793    endoplasmic reticulum-Golgi intermediate compartment    A complex system of membrane-bounded compartments located between endoplasmic reticulum (ER) and the Golgi complex, with a distinctive membrane protein composition; involved in ER-to-Golgi and Golgi-to-ER transport.
    GO:0033116    endoplasmic reticulum-Golgi intermediate compartment membrane    The lipid bilayer surrounding any of the compartments of the endoplasmic reticulum (ER)-Golgi intermediate compartment system.
    GO:0016021    integral component of membrane    The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
    GO:0043231    intracellular membrane-bounded organelle    Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.

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  Cis Peptide Bonds
    Ala A:128 - Asp A:129   [ RasMol ]  
    Ala B:128 - Asp B:129   [ RasMol ]  
    Ala C:128 - Asp C:129   [ RasMol ]  
    Ala D:128 - Asp D:129   [ RasMol ]  
    Asn A:170 - Pro A:171   [ RasMol ]  
    Asn B:170 - Pro B:171   [ RasMol ]  
    Asn C:170 - Pro C:171   [ RasMol ]  
    Asn D:170 - Pro D:171   [ RasMol ]  
    Gly A:62 - Pro A:63   [ RasMol ]  
    Gly B:62 - Pro B:63   [ RasMol ]  
    Gly C:62 - Pro C:63   [ RasMol ]  
    Gly D:62 - Pro D:63   [ RasMol ]  
 
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 Related Entries

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        LMAN1_RAT | Q629021gv9

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1gv9