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(-) Description

Title :  STRUCTURE OF YCFC PROTEIN OF UNKNOWN FUNCTION ESCHERICHIA COLI
 
Authors :  Z. Otwinowski, Midwest Center For Structural Genomics (Mcsg)
Date :  15 Sep 03  (Deposition) - 30 Mar 04  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym./Biol. Unit :  A
Keywords :  Structural Genomics, Helix-Turn-Helix Motif, Psi, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Z. Otwinowski, D. M. Borek, Y. Chen, T. Skarina, A. Savchenko, A. Edwards
Structure Of A Hypothetical Protein Ycfc Coded By Escherichia Coli Genome.
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN YCFC
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: YCFC PROTEIN
    Gene: YCFC
    Mutation: YES
    Organism Scientific: ESCHERICHIA COLI
    Organism Taxid: 562
    Synonym: ORF-23

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 11)

Asymmetric/Biological Unit (2, 11)
No.NameCountTypeFull Name
1HG10Ligand/IonMERCURY (II) ION
2PO41Ligand/IonPHOSPHATE ION

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREARG A:97 , HIS A:182 , ARG A:188 , HG A:307 , HOH A:340 , HOH A:414BINDING SITE FOR RESIDUE PO4 A 214
02AC2SOFTWARELEU A:12 , CYS A:16 , THR A:89 , HOH A:384BINDING SITE FOR RESIDUE HG A 301
03AC3SOFTWAREGLY A:110 , HIS A:208BINDING SITE FOR RESIDUE HG A 302
04AC4SOFTWARECYS A:31 , LEU A:36 , HOH A:349 , HOH A:363BINDING SITE FOR RESIDUE HG A 303
05AC5SOFTWAREHIS A:27 , HOH A:391 , HOH A:399BINDING SITE FOR RESIDUE HG A 304
06AC6SOFTWARETYR A:5 , GLU A:121 , HG A:306 , HOH A:377BINDING SITE FOR RESIDUE HG A 305
07AC7SOFTWARELYS A:3 , GLU A:121 , HIS A:122 , HG A:305 , HOH A:371BINDING SITE FOR RESIDUE HG A 306
08AC8SOFTWAREHIS A:182 , GLY A:186 , PO4 A:214 , HOH A:320 , HOH A:325BINDING SITE FOR RESIDUE HG A 307
09AC9SOFTWARELEU A:21 , LEU A:25 , CYS A:31BINDING SITE FOR RESIDUE HG A 308
10BC1SOFTWAREARG A:118 , HIS A:122BINDING SITE FOR RESIDUE HG A 309
11BC2SOFTWARELEU A:109 , LEU A:172 , ARG A:176BINDING SITE FOR RESIDUE HG A 310

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QZ4)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QZ4)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QZ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QZ4)

(-) Exons   (0, 0)

(no "Exon" information available for 1QZ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:213
 aligned with HFLD_ECOLI | P25746 from UniProtKB/Swiss-Prot  Length:213

    Alignment length:213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210   
           HFLD_ECOLI     1 MAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL 213
               SCOP domains d1qz4a_ A: Hypothetical protein YcfC                                                                                                                                                                                  SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------DUF489-1qz4A01 A:7-201                                                                                                                                                                             ------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhh....hhhhhh..hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 1qz4 A   1 GAKNYYDITLALAGICQSARLVQQLAHQGHCDADALHVSLNSIIDMNPSSTLAVFGGSEANLRVGLETLLGVLNASSRQGLNAELTRYTLSLMVLERKLSSAKGALDTLGNRINGLQRQLEHFDLQSETLMSAMAAIYVDVISPLGPRIQVTGSPAVLQSPQVQAKVRATLLAGIRAAVLWHQVGGGRLQLMFSRNRLTTQAKQILAHLTPEL 213
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1QZ4)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: DUF489] (2)

(-) Gene Ontology  (6, 6)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (HFLD_ECOLI | P25746)
molecular function
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0009408    response to heat    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heat stimulus, a temperature stimulus above the optimal temperature for that organism.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0031234    extrinsic component of cytoplasmic side of plasma membrane    The component of a plasma membrane consisting of gene products and protein complexes that are loosely bound to its cytoplasmic surface, but not integrated into the hydrophobic region.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

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        HFLD_ECOLI | P25746: 1sdi

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