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(-) Description

Title :  CRYSTAL STRUCTURE OF THE TRIPLE-HELICAL COLLAGEN-LIKE PEPTIDE, (PRO-HYP-GLY)4-GLU-LYS-GLY(PRO-HYP-GLY)5
 
Authors :  R. Z. Kramer, M. Venugopal, J. Bella, B. Brodsky, H. M. Berman
Date :  23 Jun 99  (Deposition) - 30 Aug 00  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Triple Helix, Structural Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Z. Kramer, M. G. Venugopal, J. Bella, P. Mayville, B. Brodsky, H. M. Berman
Staggered Molecular Packing In Crystals Of A Collagen-Like Peptide With A Single Charged Pair.
J. Mol. Biol. V. 301 1191 2000
PubMed-ID: 10966815  |  Reference-DOI: 10.1006/JMBI.2000.4017
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - PROTEIN ((PRO-HYP-GLY)4- GLU-LYS-GLY(PRO-HYP- GLY)5)
    Chains: A, B, C
    Engineered: YES
    Other Details: COLLAGEN-LIKE MODEL SEQUENCE.
    Synthetic: YES

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 27)

Asymmetric/Biological Unit (1, 27)
No.NameCountTypeFull Name
1HYP27Mod. Amino Acid4-HYDROXYPROLINE

(-) Sites  (0, 0)

(no "Site" information available for 1QSU)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1QSU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 1QSU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1QSU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 1QSU)

(-) Exons   (0, 0)

(no "Exon" information available for 1QSU)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d1qsua_ A:                     SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1qsu A  1 PpGPpGPpGPpGEKGPpGPpGPpGPpGPpG 30
                             |  |  |10|     | 20  |  |  30
                             |  |  |  |     |  |  |  |  | 
                             2-HYP |  |     |  |  |  |  | 
                                5-HYP |     |  |  |  |  | 
                                   8-HYP    |  |  |  |  | 
                                     11-HYP |  |  |  |  | 
                                           17-HYP |  |  | 
                                              20-HYP |  | 
                                                 23-HYP | 
                                                    26-HYP


Chain B from PDB  Type:PROTEIN  Length:30
                                                             
               SCOP domains d1qsub_ B:                     SCOP domains
               CATH domains ------------------------------ CATH domains
               Pfam domains ------------------------------ Pfam domains
         Sec.struct. author .............................. Sec.struct. author
                 SAPs(SNPs) ------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------ PROSITE
                 Transcript ------------------------------ Transcript
                  1qsu B 31 PpGPpGPpGPpGEKGPpGPpGPpGPpGPpG 60
                             |  |  |40|     | 50  |  |  60
                             |  |  |  |     |  |  |  |  | 
                            32-HYP |  |     |  |  |  |  | 
                               35-HYP |     |  |  |  |  | 
                                  38-HYP    |  |  |  |  | 
                                     41-HYP |  |  |  |  | 
                                           47-HYP |  |  | 
                                              50-HYP |  | 
                                                 53-HYP | 
                                                    56-HYP


Chain C from PDB  Type:PROTEIN  Length:29
                                                            
               SCOP domains d1qsuc_ C:                    SCOP domains
               CATH domains ----------------------------- CATH domains
               Pfam domains ----------------------------- Pfam domains
         Sec.struct. author ............................. Sec.struct. author
                 SAPs(SNPs) ----------------------------- SAPs(SNPs)
                    PROSITE ----------------------------- PROSITE
                 Transcript ----------------------------- Transcript
                  1qsu C 61 PpGPpGPpGPpGEKGPpGPpGPpGPpGPp 89
                             |  |  |70|     | 80  |  |  |
                             |  |  |  |     |  |  |  |  |
                            62-HYP |  |     |  |  |  |  |
                               65-HYP |     |  |  |  |  |
                                  68-HYP    |  |  |  |  |
                                     71-HYP |  |  |  |  |
                                           77-HYP |  |  |
                                              80-HYP |  |
                                                 83-HYP |
                                                    86-HYP
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: Designed proteins (167)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 1QSU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1QSU)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 1QSU)

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