1QSM - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   HISTONE ACETYLTRANSFERASE HPA2 FROM SACCHAROMYCES CEREVISIAE IN COMPLEX WITH ACETYL COENZYME A

Authors :   M. L. Angus-Hill, R. N. Dutnall, S. T. Tafrov, R. Sternglanz, V. Ramakri

Date :   22 Jun 99 (Deposition) - 22 Dec 99 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.40

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B  (1x)

Keywords :   Protein-Acetyl Coenzyme A Complex, Acetyltransferase, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. L. Angus-Hill, R. N. Dutnall, S. T. Tafrov, R. Sternglanz, V. Ramakrishnan
Crystal Structure Of The Histone Acetyltransferase Hpa2: A Tetrameric Member Of The Gcn5-Related N-Acetyltransferase Superfamily.
J. Mol. Biol. V. 294 1311 1999
PubMed-ID: 10600387 | Reference-DOI: 10.1006/JMBI.1999.3338

Molecule 1 - HPA2 HISTONE ACETYLTRANSFERASE
	Chains	:	A, B, C, D
	EC Number	:	2.3.1.48
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET13A
	Expression System Taxid	:	562
	Organism Common	:	BAKER'S YEAST
	Organism Scientific	:	SACCHAROMYCES CEREVISIAE
	Organism Taxid	:	4932

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B	C	D
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 4)

No.	Name	Count	Type	Full Name
1	ACO	4	Ligand/Ion	ACETYL COENZYME *A

Biological Unit 1 (1, 4)

No.	Name	Count	Type	Full Name
1	ACO	4	Ligand/Ion	ACETYL COENZYME *A

Biological Unit 2 (1, 2)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A

Biological Unit 3 (1, 2)

No.	Name	Count	Type	Full Name
1	ACO	2	Ligand/Ion	ACETYL COENZYME *A

Asymmetric Unit (4, 4)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:29 , PHE A:32 , LEU A:93 , TYR A:94 , VAL A:95 , ARG A:100 , VAL A:101 , LYS A:102 , GLY A:103 , GLY A:105 , GLY A:106 , CYS A:127 , THR A:128 , ASN A:132 , ARG A:134 , ALA A:135 , LEU A:137 , LEU A:138 , TYR A:139 , LYS A:141 , HOH A:1204 , HOH A:1216 , HOH A:1219 , HOH A:1223 , HOH A:1253 , ACO C:1202	BINDING SITE FOR RESIDUE ACO A 1200
2	AC2	SOFTWARE	TYR B:29 , PHE B:32 , TYR B:33 , ASN B:91 , LEU B:93 , TYR B:94 , VAL B:95 , ARG B:100 , VAL B:101 , LYS B:102 , GLY B:103 , ALA B:104 , GLY B:105 , GLY B:106 , CYS B:127 , THR B:128 , ASN B:132 , ARG B:134 , ALA B:135 , LEU B:138 , TYR B:139 , LYS B:141 , HOH B:1217 , HOH B:1221 , HOH B:1240 , HOH B:1242 , HOH B:1243 , ARG D:134 , ACO D:1203	BINDING SITE FOR RESIDUE ACO B 1201
3	AC3	SOFTWARE	ARG A:134 , ACO A:1200 , TYR C:29 , PHE C:32 , TYR C:33 , LEU C:93 , VAL C:95 , ARG C:100 , VAL C:101 , LYS C:102 , GLY C:103 , ALA C:104 , GLY C:105 , GLY C:106 , CYS C:127 , THR C:128 , ASN C:132 , ARG C:134 , ALA C:135 , LEU C:137 , LEU C:138 , TYR C:139 , LYS C:141 , HOH C:1215 , HOH C:1243 , HOH C:1246	BINDING SITE FOR RESIDUE ACO C 1202
4	AC4	SOFTWARE	ACO B:1201 , TYR D:29 , PHE D:32 , TYR D:33 , LEU D:93 , TYR D:94 , VAL D:95 , ARG D:100 , VAL D:101 , LYS D:102 , GLY D:103 , ALA D:104 , GLY D:105 , GLY D:106 , CYS D:127 , THR D:128 , ASN D:132 , ARG D:134 , ALA D:135 , LEU D:137 , LEU D:138 , TYR D:139 , LYS D:141 , HOH D:1216 , HOH D:1228 , HOH D:1234 , HOH D:1236 , HOH D:1248	BINDING SITE FOR RESIDUE ACO D 1203

(no "SS Bond" information available for 1QSM)

(no "Cis Peptide Bond" information available for 1QSM)

(no "SAP(SNP)/Variant" information available for 1QSM)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	HPA2_YEAST	9-156	4	A:9-156 B:9-156 C:9-156 D:9-156

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	HPA2_YEAST	9-156	4	A:9-156 B:9-156 C:9-156 D:9-156

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	HPA2_YEAST	9-156	2	- - C:9-156 D:9-156

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	HPA2_YEAST	9-156	2	A:9-156 B:9-156 - -

Asymmetric Unit (1, 4)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	YPR193C	1	YPR193C.1	XVI:923375-922905	471	HPA2_YEAST	1-156	156	4	A:7-156 B:8-156 C:8-156 D:5-156	150 149 149 152

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:150
 aligned with HPA2_YEAST | Q06592 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:150
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156
           HPA2_YEAST     7 DNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
               SCOP domains d1qsma_ A: Histone acetyltransferase HPA2                                                                                                              SCOP domains
               CATH domains 1qsmA00 A:7-156  [code=3.40.630.30, no name defined]                                                                                                   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh....eeeeeeee.....eeeeeeeeee........eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhheee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --GNAT  PDB: A:9-156 UniProt: 9-156                                                                                                                    PROSITE
               Transcript 1 Exon 1.1  PDB: A:7-156 UniProt: 1-156 [INCOMPLETE]                                                                                                     Transcript 1
                 1qsm A   7 DNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156

Chain B from PDB  Type:PROTEIN  Length:149
 aligned with HPA2_YEAST | Q06592 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:149
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         
           HPA2_YEAST     8 NITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
               SCOP domains d1qsmb_ B: Histone acetyltransferase HPA2                                                                                                             SCOP domains
               CATH domains 1qsmB00 B:8-156  [code=3.40.630.30, no name defined]                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhh....eeeeeeee.....eeeeeeeeee........eeeeeeeee.......hhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhheeee.eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: B:9-156 UniProt: 9-156                                                                                                                    PROSITE
               Transcript 1 Exon 1.1  PDB: B:8-156 UniProt: 1-156 [INCOMPLETE]                                                                                                    Transcript 1
                 1qsm B   8 NITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147

Chain C from PDB  Type:PROTEIN  Length:149
 aligned with HPA2_YEAST | Q06592 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:149
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147         
           HPA2_YEAST     8 NITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
               SCOP domains d1qsmc_ C: Histone acetyltransferase HPA2                                                                                                             SCOP domains
               CATH domains 1qsmC00 C:8-156  [code=3.40.630.30, no name defined]                                                                                                  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....eeeeeeee.....eeeeeeeeee........eeeeeeeee.......hhhhhhhhhhhhhhhh.....eeeeee..hhhhhhhhhhheee..eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: C:9-156 UniProt: 9-156                                                                                                                    PROSITE
               Transcript 1 Exon 1.1  PDB: C:8-156 UniProt: 1-156 [INCOMPLETE]                                                                                                    Transcript 1
                 1qsm C   8 NITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147

Chain D from PDB  Type:PROTEIN  Length:152
 aligned with HPA2_YEAST | Q06592 from UniProtKB/Swiss-Prot  Length:156

    Alignment length:152
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154  
           HPA2_YEAST     5 SEDNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
               SCOP domains d1qsmd_ D: Histone acetyltransferase HPA2                                                                                                                SCOP domains
               CATH domains 1qsmD00 D:5-156  [code=3.40.630.30, no name defined]                                                                                                     CATH domains
           Pfam domains (1) -----------------------------------------------------------Acetyltransf_1-1qsmD01 D:64-145                                                   ----------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------------------Acetyltransf_1-1qsmD02 D:64-145                                                   ----------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------------------Acetyltransf_1-1qsmD03 D:64-145                                                   ----------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------------------Acetyltransf_1-1qsmD04 D:64-145                                                   ----------- Pfam domains (4)
         Sec.struct. author ....eeeee.hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh....eeeeeeee.....eeeeeeeeee........eeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeee..hhhhhhhhhhheee..eeeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----GNAT  PDB: D:9-156 UniProt: 9-156                                                                                                                    PROSITE
               Transcript 1 Exon 1.1  PDB: D:5-156 UniProt: 1-156 [INCOMPLETE]                                                                                                       Transcript 1
                 1qsm D   5 SEDNITVRFVTENDKEGWQRLWKSYQDFYEVSFPDDLDDFNFGRFLDPNIKMWAAVAVESSSEKIIGMINFFNHMTTWDFKDKIYINDLYVDENSRVKGAGGKLIQFVYDEADKLGTPSVYWCTDESNHRAQLLYVKVGYKAPKILYKRKGY 156
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Acyl-CoA N-acyltransferases (Nat) (250)

Superfamily: Acyl-CoA N-acyltransferases (Nat) (250)

Family: N-acetyl transferase, NAT (154)

Protein domain: Histone acetyltransferase HPA2 (2)

Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932] (2)

1a	d1qsma_	A:
1b	d1qsmb_	B:
1c	d1qsmc_	C:
1d	d1qsmd_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aminopeptidase (284)

Homologous Superfamily: [code=3.40.630.30, no name defined] (126)

Baker's yeast (Saccharomyces cerevisiae) (10)

1a	1qsmD00	D:5-156
1b	1qsmA00	A:7-156
1c	1qsmB00	B:8-156
1d	1qsmC00	C:8-156

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: Acetyltransf_1 (58)

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Bakers yeast) (3)

1a	Acetyltransf_1-1qsmD01	D:64-145
1b	Acetyltransf_1-1qsmD02	D:64-145
1c	Acetyltransf_1-1qsmD03	D:64-145
1d	Acetyltransf_1-1qsmD04	D:64-145

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (HPA2_YEAST | Q06592)

molecular function
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0004402	histone acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + histone = CoA + acetyl-histone.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0042803	protein homodimerization activity	Interacting selectively and non-covalently with an identical protein to form a homodimer.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0016573	histone acetylation	The modification of a histone by the addition of an acetyl group.
	GO:0051289	protein homotetramerization	The formation of a protein homotetramer, a macromolecular structure consisting of four noncovalently associated identical subunits.

Asymmetric Unit
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	1qsm
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(no "Related Entries Specified in the PDB File" available for 1QSM)

Description

Compounds

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Chains, Units

Ligands, Modified Residues, Ions (1, 4)

Sites (4, 4)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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